Rh7DG402900

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000351
Physical Location & Seq
Forward (+)
55553581 .. 55555991
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG402900.1

Sequence Viewer

Length: 1086 bp
ATGGAAAGAATGAAACTATGGTACCTGCACAACCTCCTTATTCGAAAAGCCACTCCCGAGACCAACATGGAACACATTGTTGAAAAAATTAGGAGTATGGAGGAGTATTGTCATGATTGCTATGACGAAAAAATTGATCTGAGTAGTGCAAAGTTTGTAGAGATGTTGGTAGTTGATGGTTTCTTTATTATTGACCTCTTCCGCAAAATGATAGGAGACATGCCCAGAGGCGTGGATGATCCTCTATTCAATAGGTCAGGGATGTTGTCGATAGTACAAAATGACTTGCTTCTACTAGAAAACCAACTGCCTTGGAGAGTTCTTGACTGCTTATTCCATCAAGTACCTGGTGGAAAATGCAGGTCCCTTTGGGAGCTTACTCAAAGGATCCTTCCGAGTTGGAGAGGTTTAGAATATTTTGTTTCTCATGTTCCAAATACATTGCAAAGCAGACATTTACTCGACACTCTTAGAATCCTTTCAGTTGAATTTGAATCGGACAAGAACGAGAAGGTTTGTCCATTTCGGGTGCGGATCCCCTCTGCGACAGAGCTTCTCCAAGTCGGAGTCAAATTTAGACGTAAAAGAGGTTTCAACAGCATACTCAACATAACCATGCTCGATGGAGTGATGGAGATTGCACCAATAACTTTGGACGCCGAAAAATATGTCTTCAGAAACCTCATAGCCTTGGAAGAATATGAACCAAGGCACCATAAGTATCAAATTACCTCTTATGCCGGGGTCATGCATGACCTTATTAAATCTAGCAAAGATTTGGAGTTTCTCATGCAAAAAGGCATTATTAACACCATTAGTCTGCGAAAGGAGGACATAGTCTATTTCTTCAACACCATTCTTGATGACAGTAATACAGTCTCCTCTTGTTCCTCTATCGTGTTACTATCCGCCGGAGTGACCGAGTATTATGATCACCGTTGGCTACGAAGATGGATAGCGTCAATCAAGCGTGATTACTTGTACAATCCATCATCAATATGGTCAATCTCTAATGCAATTGTGTTTATAACAATTTTGACCATCATACAAACCGTGTATTCAGTTCTCTCTTACTACAAGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

361

Amino Acids

42.3

Weight (kDa)

6.8

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 343 5.3e-73 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1028
Acc36I ACCTGC 2 cut(s) 33, 351
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 2 cut(s) 21, 711
AciI CCGC 3 cut(s) 202, 532, 909
AclWI GGATC 5 cut(s) 233, 382, 395, 529, 542
AcsI RAATTY 2 cut(s) 488, 572
AcuI CTGAAG 1 cut(s) 658
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 4 cut(s) 23, 276, 345, 983
AgsI TTSAA 6 cut(s) 83, 250, 488, 494, 595, 850
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 2 cut(s) 376, 553
AluI AGCT 2 cut(s) 376, 553
Alw26I GTCTC 3 cut(s) 53, 210, 883
AlwI GGATC 5 cut(s) 233, 382, 395, 529, 542
Ama87I CYCGRG 1 cut(s) 56
ApoI RAATTY 2 cut(s) 488, 572
ArsI GACNNNNNNTTYG 2 cut(s) 654, 686
Asp700I GAANNNNTTC 1 cut(s) 478
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 742
AsuHPI GGTGA 1 cut(s) 926
AsuII TTCGAA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 363
BaeI ACNNNNGTAYC 1 cut(s) 38
BamHI GGATCC 2 cut(s) 387, 534
BanI GGYRCC 2 cut(s) 21, 711
BbsI GAAGAC 1 cut(s) 664
BccI CCATC 7 cut(s) 170, 345, 617, 625, 945, 997, 1049
BciT130I CCWGG 1 cut(s) 348
BclI TGATCA 1 cut(s) 931
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 3 cut(s) 53, 210, 883
BfaI CTAG 2 cut(s) 296, 768
BfuAI ACCTGC 2 cut(s) 33, 351
Bme1390I CCNGG 2 cut(s) 348, 742
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 5 cut(s) 23, 365, 389, 536, 713
BmrFI CCNGG 2 cut(s) 348, 742
BpiI GAAGAC 1 cut(s) 664
Bpu14I TTCGAA 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 742
BsaHI GRCGYC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 4 cut(s) 311, 690, 707, 741
Bse3DI GCAATG 1 cut(s) 440
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 4 cut(s) 311, 690, 707, 741
BseGI GGATG 2 cut(s) 241, 267
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 116, 871
BsgI GTGCAG 1 cut(s) 11
BshNI GGYRCC 2 cut(s) 21, 711
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 2 cut(s) 741, 912
BslFI GGGAC 1 cut(s) 349
BsmAI GTCTC 3 cut(s) 53, 210, 883
BsmFI GGGAC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 981
Bsp143I GATC 5 cut(s) 136, 238, 387, 534, 931
BspACI CCGC 3 cut(s) 202, 532, 909
BspCNI CTCAG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 23, 365, 389, 536, 713
BspMI ACCTGC 2 cut(s) 33, 351
BspPI GGATC 5 cut(s) 233, 382, 395, 529, 542
BspT104I TTCGAA 1 cut(s) 43
BspT107I GGYRCC 2 cut(s) 21, 711
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 440
BsrGI TGTACA 1 cut(s) 981
BssECI CCNNGG 4 cut(s) 311, 690, 707, 741
BssMI GATC 5 cut(s) 136, 238, 387, 534, 931
BssNI GRCGYC 1 cut(s) 657
BssT1I CCWWGG 3 cut(s) 311, 690, 707
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 4 cut(s) 869, 877, 938, 1054
Bst6I CTCTTC 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 657
BstAUI TGTACA 1 cut(s) 981
BstBI TTCGAA 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 140, 470
BstF5I GGATG 2 cut(s) 241, 267
BstKTI GATC 5 cut(s) 139, 241, 390, 537, 934
BstMAI GTCTC 3 cut(s) 53, 210, 883
BstMBI GATC 5 cut(s) 136, 238, 387, 534, 931
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 346, 740
BstV2I GAAGAC 1 cut(s) 664
BstX2I RGATCY 2 cut(s) 387, 534
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 2 cut(s) 387, 534
BtsCI GGATG 2 cut(s) 241, 267
BveI ACCTGC 2 cut(s) 33, 351
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 363
CseI GACGC 2 cut(s) 665, 948
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 4 cut(s) 22, 275, 344, 982
CviAII CATG 8 cut(s) 67, 113, 220, 428, 616, 748, 752, 790
CviJI RGCY 5 cut(s) 50, 376, 553, 689, 943
CviKI_1 RGCY 5 cut(s) 50, 376, 553, 689, 943
CviQI GTAC 4 cut(s) 22, 275, 344, 982
DdeI CTNAG 2 cut(s) 140, 470
DpnI GATC 5 cut(s) 138, 240, 389, 536, 933
DpnII GATC 5 cut(s) 136, 238, 387, 534, 931
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
EciI GGCGGA 1 cut(s) 898
Eco130I CCWWGG 3 cut(s) 311, 690, 707
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 658
Eco88I CYCGRG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 3 cut(s) 311, 690, 707
EcoT22I ATGCAT 1 cut(s) 753
ErhI CCWWGG 3 cut(s) 311, 690, 707
FaeI CATG 8 cut(s) 70, 116, 223, 431, 619, 751, 755, 793
FaqI GGGAC 1 cut(s) 349
FatI CATG 8 cut(s) 66, 112, 219, 427, 615, 747, 751, 789
FbaI TGATCA 1 cut(s) 931
FokI GGATG 2 cut(s) 248, 274
FspBI CTAG 2 cut(s) 296, 768
HapII CCGG 2 cut(s) 741, 912
HgaI GACGC 2 cut(s) 665, 948
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 8 cut(s) 70, 116, 223, 431, 619, 751, 755, 793
HinfI GANTC 3 cut(s) 474, 494, 567
HpaII CCGG 2 cut(s) 741, 912
HphI GGTGA 1 cut(s) 926
Hpy188I TCNGA 5 cut(s) 141, 396, 499, 566, 677
Hpy188III TCNNGA 4 cut(s) 56, 113, 323, 860
HpyAV CCTTC 2 cut(s) 401, 505
HpyCH4III ACNGT 4 cut(s) 869, 877, 938, 1054
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 8 cut(s) 28, 149, 360, 445, 641, 751, 793, 1016
HpyF3I CTNAG 2 cut(s) 140, 470
HpySE526I ACGT 1 cut(s) 580
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 8 cut(s) 70, 116, 223, 431, 619, 751, 755, 793
KpnI GGTACC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 5 cut(s) 136, 238, 387, 534, 931
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 8 cut(s) 38, 238, 243, 333, 346, 360, 754, 925
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 2 cut(s) 296, 768
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 2 cut(s) 900, 916
MalI GATC 5 cut(s) 138, 240, 389, 536, 933
MboI GATC 5 cut(s) 136, 238, 387, 534, 931
MboII GAAGA 5 cut(s) 190, 664, 707, 838, 960
MfeI CAATTG 1 cut(s) 1017
MflI RGATCY 2 cut(s) 387, 534
MluCI AATT 7 cut(s) 87, 132, 488, 572, 726, 1017, 1032
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 2 cut(s) 380, 544
Mph1103I ATGCAT 1 cut(s) 753
MroXI GAANNNNTTC 1 cut(s) 478
MseI TTAA 2 cut(s) 762, 807
MslI CAYNNNNRTG 2 cut(s) 614, 997
MspI CCGG 2 cut(s) 741, 912
MspR9I CCNGG 2 cut(s) 348, 742
MunI CAATTG 1 cut(s) 1017
MvaI CCWGG 1 cut(s) 348
NciI CCSGG 1 cut(s) 742
NdeII GATC 5 cut(s) 136, 238, 387, 534, 931
NlaIII CATG 8 cut(s) 70, 116, 223, 431, 619, 751, 755, 793
NlaIV GGNNCC 5 cut(s) 23, 365, 389, 536, 713
NmuCI GTSAC 1 cut(s) 916
NsiI ATGCAT 1 cut(s) 753
NspI RCATGY 1 cut(s) 223
NspV TTCGAA 1 cut(s) 43
PagI TCATGA 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 474, 494
PflFI GACNNNGTC 1 cut(s) 836
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PpuMI RGGWCCY 1 cut(s) 363
PsiI TTATAA 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 5 cut(s) 23, 365, 389, 536, 713
PspPI GGNCC 1 cut(s) 363
PspPPI RGGWCCY 1 cut(s) 363
PsuI RGATCY 2 cut(s) 387, 534
PsyI GACNNNGTC 1 cut(s) 836
RsaI GTAC 4 cut(s) 23, 276, 345, 983
RsaNI GTAC 4 cut(s) 22, 275, 344, 982
RseI CAYNNNNRTG 2 cut(s) 614, 997
SaqAI TTAA 2 cut(s) 762, 807
Sau3AI GATC 5 cut(s) 136, 238, 387, 534, 931
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 2 cut(s) 348, 742
SexAI ACCWGGT 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 43
SinI GGWCC 1 cut(s) 363
SmiMI CAYNNNNRTG 2 cut(s) 614, 997
Sse9I AATT 7 cut(s) 87, 132, 488, 572, 726, 1017, 1032
SsiI CCGC 3 cut(s) 202, 532, 909
SspI AATATT 1 cut(s) 416
SspMI CTAG 2 cut(s) 296, 768
StyD4I CCNGG 2 cut(s) 346, 740
StyI CCWWGG 3 cut(s) 311, 690, 707
TaaI ACNGT 4 cut(s) 869, 877, 938, 1054
TaiI ACGT 1 cut(s) 583
TaqI TCGA 4 cut(s) 43, 269, 462, 621
TaqII GACCGA 1 cut(s) 935
TasI AATT 7 cut(s) 87, 132, 488, 572, 726, 1017, 1032
TatI WGTACW 2 cut(s) 274, 981
TfiI GAWTC 2 cut(s) 474, 494
Tru1I TTAA 2 cut(s) 762, 807
Tru9I TTAA 2 cut(s) 762, 807
TseFI GTSAC 1 cut(s) 916
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 2 cut(s) 26, 717
Tth111I GACNNNGTC 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 2 cut(s) 488, 572
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 2 cut(s) 344, 996
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 2 cut(s) 296, 768
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.