Rroxscaffold_2G00087190

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000351
Physical Location & Seq
Reverse (-)
9294314 .. 9296480
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087190.1

Sequence Viewer

Length: 948 bp
ATGTGGAGCCAAGAACAGGTTATTACACACTTTATCAACCTCATTGCCCTCGAAGAATGCCAACAAGGCCTCATAGGTTATGCATTTACCTCTTATGCCAGGGTCTTGCATTATATTATTAAATCTAGCAAAGATGCGGAATTTCTCATGCAGAAAGGAATTATACATACCACTTCGAGCAAGGAGGACATAACCTGTCTCTTCAATTGCATTCATGATAACGCAACACCGACCTCTGAATCTGTTGTAATTCTCACCAGGAATGTGCATTTGTATTGTAAGCTTCGTTGGCTCAGGAGATGCCTTATAAGTATCAAACAGGATTATCTATACAATCCATCTTCAGTCTGGTCCCTTTCTAATGCGGTCATCATTATCGTAATTCTCGGCATCGCACAAACCATATACACTCCTCTCTTACTACAAAGCTACTGCAACTTGGAGTCAGATTTAAATCTAGAGAGTTCTTGCAATCTGCTCAACATAACCTTCCACGATGGAGTGATGGAGATTCCTCAGATTTTTGTTCACAAAAATCAATCTCTTTTTCTAAACCTCATTGCCCTTGAACAGTGTGAACAAGGGCGCATTGGATATGATTTTACCTCATATGCCAGGGTCCTGCATTACCTTATTAAGTCAAGTAAAGATGCAGACTTTCTCATGCAGAAGGGAATCATAAAAACCAGATTGAGCAAGGAGGACATAGTTCGTCTCTTCACTGGTGTCTGCAATAACACTACATTTACTTCCGACTCTTTCTCTCATCTCTCCCGGGAAGTTCATTTGTTTTCTAAGGAGCGGTGGCTGCAGAGATGCCTAATTAGCATTAAACGGGATTATTTATACAATCCATCTTCAATCTGGTCAATTTCTAATGCGGTCTTCCTTGTCATAATTTTCACATTCACACAAACCTTATACACTGTTCTCTCTTACTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

315

Amino Acids

36.45

Weight (kDa)

7.99

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 9 - 127 1.1e-17 Plant protein of unknown function
DUF247 PF03140 155 - 299 6.3e-30 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 802
AciI CCGC 4 cut(s) 137, 365, 802, 881
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 205, 569, 861
AjnI CCWGG 3 cut(s) 98, 257, 614
AluBI AGCT 2 cut(s) 283, 429
AluI AGCT 2 cut(s) 283, 429
Alw26I GTCTC 2 cut(s) 203, 719
Ama87I CYCGRG 1 cut(s) 774
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 808
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 1 cut(s) 588
AspS9I GGNCC 2 cut(s) 351, 619
AsuC2I CCSGG 2 cut(s) 775, 776
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 774
AvaII GGWCC 2 cut(s) 351, 619
BbsI GAAGAC 1 cut(s) 877
BbvI GCAGC 1 cut(s) 795
BccI CCATC 4 cut(s) 346, 491, 499, 862
BciT130I CCWGG 3 cut(s) 100, 259, 616
BcnI CCSGG 2 cut(s) 775, 776
BcoDI GTCTC 2 cut(s) 203, 719
BfaI CTAG 2 cut(s) 126, 458
BfmI CTRYAG 1 cut(s) 809
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 1 cut(s) 809
BlsI GCNGC 1 cut(s) 810
Bme1390I CCNGG 5 cut(s) 100, 259, 616, 775, 776
Bme18I GGWCC 2 cut(s) 351, 619
BmeT110I CYCGRG 1 cut(s) 774
BmgT120I GGNCC 2 cut(s) 351, 619
BmiI GGNNCC 3 cut(s) 8, 353, 620
BmrFI CCNGG 5 cut(s) 100, 259, 616, 775, 776
BmsI GCATC 5 cut(s) 124, 290, 399, 640, 806
BpiI GAAGAC 1 cut(s) 877
Bpu10I CCTNAGC 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 775, 776
BsaBI GATNNNNATC 1 cut(s) 453
BsaJI CCNNGG 3 cut(s) 99, 615, 774
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 727
Bse3DI GCAATG 2 cut(s) 42, 558
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 3 cut(s) 100, 259, 616
BseDI CCNNGG 3 cut(s) 99, 615, 774
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 2 cut(s) 42, 558
BseMII CTCAG 2 cut(s) 307, 530
BseNI ACTGG 1 cut(s) 727
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 795
BshFI GGCC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 774
BsiSI CCGG 1 cut(s) 775
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 203, 719
BsmBI CGTCTC 1 cut(s) 719
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 2 cut(s) 62, 210
BsnI GGCC 1 cut(s) 69
BsoBI CYCGRG 1 cut(s) 774
BspACI CCGC 4 cut(s) 137, 365, 802, 881
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 306, 529
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 8, 353, 620
BspMAI CTGCAG 1 cut(s) 813
BsrBI CCGCTC 1 cut(s) 802
BsrDI GCAATG 2 cut(s) 42, 558
BsrI ACTGG 1 cut(s) 727
BssECI CCNNGG 3 cut(s) 99, 615, 774
Bst2UI CCWGG 3 cut(s) 100, 259, 616
Bst4CI ACNGT 2 cut(s) 573, 928
Bst6I CTCTTC 2 cut(s) 206, 722
BstDEI CTNAG 3 cut(s) 293, 516, 795
BstHHI GCGC 1 cut(s) 588
BstMAI GTCTC 2 cut(s) 203, 719
BstMWI GCNNNNNNNGC 4 cut(s) 66, 289, 808, 825
BstNI CCWGG 3 cut(s) 100, 259, 616
BstSCI CCNGG 5 cut(s) 98, 257, 614, 773, 774
BstSFI CTRYAG 1 cut(s) 809
BstV1I GCAGC 1 cut(s) 795
BstV2I GAAGAC 1 cut(s) 877
BsuRI GGCC 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 376
BtsIMutI CAGTG 3 cut(s) 578, 720, 924
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 588
Cfr13I GGNCC 2 cut(s) 351, 619
Cfr9I CCCGGG 1 cut(s) 774
CviAII CATG 3 cut(s) 148, 215, 664
CviJI RGCY 6 cut(s) 9, 69, 283, 292, 429, 808
CviKI_1 RGCY 6 cut(s) 9, 69, 283, 292, 429, 808
DdeI CTNAG 3 cut(s) 293, 516, 795
DraI TTTAAA 1 cut(s) 453
Eam1104I CTCTTC 2 cut(s) 206, 722
EarI CTCTTC 2 cut(s) 206, 722
Eco147I AGGCCT 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 351, 619
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 774
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 3 cut(s) 98, 257, 614
EcoT22I ATGCAT 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 719
FaeI CATG 3 cut(s) 151, 218, 667
FaqI GGGAC 1 cut(s) 337
FatI CATG 3 cut(s) 147, 214, 663
FauNDI CATATG 1 cut(s) 610
Fnu4HI GCNGC 1 cut(s) 809
Fsp4HI GCNGC 1 cut(s) 809
FspBI CTAG 2 cut(s) 126, 458
GlaI GCGC 1 cut(s) 587
GluI GCNGC 1 cut(s) 809
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 775
HhaI GCGC 1 cut(s) 588
Hin1II CATG 3 cut(s) 151, 218, 667
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 5 cut(s) 239, 443, 511, 675, 755
HpaII CCGG 1 cut(s) 775
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 529, 578
Hpy188I TCNGA 4 cut(s) 238, 448, 519, 754
Hpy188III TCNNGA 3 cut(s) 215, 295, 458
Hpy8I GTNNAC 2 cut(s) 529, 578
HpyAV CCTTC 2 cut(s) 499, 664
HpyCH4III ACNGT 2 cut(s) 573, 928
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 289, 808, 825
HpyF3I CTNAG 3 cut(s) 293, 516, 795
Hsp92II CATG 3 cut(s) 151, 218, 667
HspAI GCGC 1 cut(s) 586
LmnI GCTCC 2 cut(s) 6, 799
Lsp1109I GCAGC 1 cut(s) 795
LweI GCATC 5 cut(s) 124, 290, 399, 640, 806
MaeI CTAG 2 cut(s) 126, 458
MbiI CCGCTC 1 cut(s) 802
MboII GAAGA 6 cut(s) 65, 193, 333, 709, 849, 877
MfeI CAATTG 1 cut(s) 205
MluCI AATT 8 cut(s) 140, 159, 205, 249, 381, 822, 870, 897
MlyI GAGTC 2 cut(s) 452, 749
MmeI TCCRAC 1 cut(s) 777
Mph1103I ATGCAT 1 cut(s) 85
MseI TTAA 4 cut(s) 120, 452, 636, 831
MspI CCGG 1 cut(s) 775
MspR9I CCNGG 5 cut(s) 100, 259, 616, 775, 776
MunI CAATTG 1 cut(s) 205
Mva1269I GAATGC 2 cut(s) 62, 210
MvaI CCWGG 3 cut(s) 100, 259, 616
MwoI GCNNNNNNNGC 4 cut(s) 66, 289, 808, 825
NciI CCSGG 2 cut(s) 775, 776
NdeI CATATG 1 cut(s) 610
NlaIII CATG 3 cut(s) 151, 218, 667
NlaIV GGNNCC 3 cut(s) 8, 353, 620
NmeAIII GCCGAG 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 85
PagI TCATGA 1 cut(s) 214
PceI AGGCCT 1 cut(s) 69
PctI GAATGC 2 cut(s) 62, 210
PfeI GAWTC 3 cut(s) 239, 511, 675
PkrI GCNGC 1 cut(s) 810
PleI GAGTC 2 cut(s) 451, 749
PpsI GAGTC 2 cut(s) 451, 749
PpuMI RGGWCCY 1 cut(s) 619
PsiI TTATAA 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 3 cut(s) 98, 257, 614
PspGI CCWGG 3 cut(s) 98, 257, 614
PspN4I GGNNCC 3 cut(s) 8, 353, 620
PspPI GGNCC 2 cut(s) 351, 619
PspPPI RGGWCCY 1 cut(s) 619
PstI CTGCAG 1 cut(s) 813
SaqAI TTAA 4 cut(s) 120, 452, 636, 831
SatI GCNGC 1 cut(s) 809
Sau96I GGNCC 2 cut(s) 351, 619
SchI GAGTC 2 cut(s) 452, 749
ScrFI CCNGG 5 cut(s) 100, 259, 616, 775, 776
SfaNI GCATC 5 cut(s) 124, 290, 399, 640, 806
SfcI CTRYAG 1 cut(s) 809
SinI GGWCC 2 cut(s) 351, 619
SmaI CCCGGG 1 cut(s) 776
SmiI ATTTAAAT 1 cut(s) 453
Sse9I AATT 8 cut(s) 140, 159, 205, 249, 381, 822, 870, 897
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 4 cut(s) 137, 365, 802, 881
SspMI CTAG 2 cut(s) 126, 458
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 5 cut(s) 98, 257, 614, 773, 774
SwaI ATTTAAAT 1 cut(s) 453
TaaI ACNGT 2 cut(s) 573, 928
TaqI TCGA 2 cut(s) 51, 176
TasI AATT 8 cut(s) 140, 159, 205, 249, 381, 822, 870, 897
TfiI GAWTC 3 cut(s) 239, 511, 675
Tru1I TTAA 4 cut(s) 120, 452, 636, 831
Tru9I TTAA 4 cut(s) 120, 452, 636, 831
TscAI CASTG 3 cut(s) 578, 727, 931
TseI GCWGC 1 cut(s) 808
TspDTI ATGAA 2 cut(s) 203, 773
TspMI CCCGGG 1 cut(s) 774
TspRI CASTG 3 cut(s) 578, 727, 931
VpaK11BI GGWCC 2 cut(s) 351, 619
XapI RAATTY 1 cut(s) 140
XbaI TCTAGA 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 2 cut(s) 345, 861
XmaI CCCGGG 1 cut(s) 774
XspI CTAG 2 cut(s) 126, 458
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.