Rmu_sc0000693.1_g000032

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000693.1
OG0000351
Physical Location & Seq
Forward (+)
152728 .. 153672
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000693.1_g000032.1.cds

Sequence Viewer

Length: 945 bp
atggaaagaatgaaactatggtacctgcacaacctccttattcgaaaagccactcccgagaccaacatggaacacattgttgaaaaaattaggagtatggaggagtattgtcatgattgctatgacaaaaaaattgatctgagtagtgcaaagtttgcagagatgttggtagttgatggtttctttattattgaactcttccgcaaaatgataggagacatgcccagaggcgtggatgatcctctattcaataggtcagggatgttgtcgatagtacaaaatgacttgcttctactagaaaaccaactgccttggagagttcttgactgcttattccatcaagtacctggtggaaaatgcaggtccctttgggagcttactcaaaggatccttccgagttggagaggtttagaatattttgtttctcatgttccaaatacattgcaaagcaaacatttactcgacactcttagaatcctttcagttgaatttgaatcggacaagaacgagatggtttgtccatttcgggtgcggatcccctctgcgacagagcttctccaagtcggagtcaaatttagacgtaaaagaggtttcaacagcatactcaacataaccatgctcgatggagtgatggagattgcaccaataactttggacgccgaaaaatatgtcttcagaaacctcatagccttggaagaatatgaaccaaggctccataagtatcaaattacctcttatgccggggtcatgcatgaccttattaaatctagcaaagatttggagtttctcatgcaaaaaggcattattaacaccattagtctgcgaaaggaggacatagtctatttcttcaacaccattcttgatgacagtaatacagtctcctcttgttcctctatcgtgttactatccgccggagtgaccgagtattatcagtggcggatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

314

Amino Acids

36.69

Weight (kDa)

6.27

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 33, 351
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AciI CCGC 4 cut(s) 202, 532, 909, 937
AclWI GGATC 5 cut(s) 233, 382, 395, 529, 542
AcsI RAATTY 2 cut(s) 488, 572
AcuI CTGAAG 1 cut(s) 658
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 3 cut(s) 23, 276, 345
AgsI TTSAA 7 cut(s) 83, 194, 250, 488, 494, 595, 850
AjnI CCWGG 1 cut(s) 346
AloI GAACNNNNNNTCC 2 cut(s) 696, 728
AluBI AGCT 2 cut(s) 376, 553
AluI AGCT 2 cut(s) 376, 553
Alw26I GTCTC 3 cut(s) 53, 210, 883
AlwI GGATC 5 cut(s) 233, 382, 395, 529, 542
Ama87I CYCGRG 1 cut(s) 56
ApoI RAATTY 2 cut(s) 488, 572
ArsI GACNNNNNNTTYG 2 cut(s) 654, 686
Asp700I GAANNNNTTC 1 cut(s) 478
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 742
AsuII TTCGAA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 363
BaeI ACNNNNGTAYC 1 cut(s) 38
BamHI GGATCC 2 cut(s) 387, 534
BanI GGYRCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 664
BccI CCATC 5 cut(s) 170, 345, 505, 617, 625
BciT130I CCWGG 1 cut(s) 348
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 3 cut(s) 53, 210, 883
BfaI CTAG 3 cut(s) 296, 768, 943
BfuAI ACCTGC 2 cut(s) 33, 351
Bme1390I CCNGG 2 cut(s) 348, 742
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 5 cut(s) 23, 365, 389, 536, 713
BmrFI CCNGG 2 cut(s) 348, 742
BpiI GAAGAC 1 cut(s) 664
Bpu14I TTCGAA 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 742
BsaHI GRCGYC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 4 cut(s) 311, 690, 707, 741
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bse3DI GCAATG 1 cut(s) 440
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 4 cut(s) 311, 690, 707, 741
BseGI GGATG 2 cut(s) 241, 267
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 116, 871
BsgI GTGCAG 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 2 cut(s) 741, 912
BslFI GGGAC 1 cut(s) 349
BsmAI GTCTC 3 cut(s) 53, 210, 883
BsmFI GGGAC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 43
Bsp143I GATC 5 cut(s) 136, 238, 387, 534, 939
BspACI CCGC 4 cut(s) 202, 532, 909, 937
BspCNI CTCAG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 23, 365, 389, 536, 713
BspMI ACCTGC 2 cut(s) 33, 351
BspPI GGATC 5 cut(s) 233, 382, 395, 529, 542
BspT104I TTCGAA 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 440
BssECI CCNNGG 4 cut(s) 311, 690, 707, 741
BssMI GATC 5 cut(s) 136, 238, 387, 534, 939
BssNI GRCGYC 1 cut(s) 657
BssT1I CCWWGG 3 cut(s) 311, 690, 707
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 869, 877
Bst6I CTCTTC 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 657
BstAPI GCANNNNNTGC 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 140, 470
BstF5I GGATG 2 cut(s) 241, 267
BstKTI GATC 5 cut(s) 139, 241, 390, 537, 942
BstMAI GTCTC 3 cut(s) 53, 210, 883
BstMBI GATC 5 cut(s) 136, 238, 387, 534, 939
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 346, 740
BstV2I GAAGAC 1 cut(s) 664
BstX2I RGATCY 3 cut(s) 387, 534, 939
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 3 cut(s) 387, 534, 939
BtsCI GGATG 2 cut(s) 241, 267
BtsIMutI CAGTG 1 cut(s) 938
BveI ACCTGC 2 cut(s) 33, 351
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 363
CseI GACGC 1 cut(s) 665
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 3 cut(s) 22, 275, 344
CviAII CATG 8 cut(s) 67, 113, 220, 428, 616, 748, 752, 790
CviJI RGCY 5 cut(s) 50, 376, 553, 689, 712
CviKI_1 RGCY 5 cut(s) 50, 376, 553, 689, 712
CviQI GTAC 3 cut(s) 22, 275, 344
DdeI CTNAG 2 cut(s) 140, 470
DpnI GATC 5 cut(s) 138, 240, 389, 536, 941
DpnII GATC 5 cut(s) 136, 238, 387, 534, 939
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
EciI GGCGGA 1 cut(s) 898
Eco130I CCWWGG 3 cut(s) 311, 690, 707
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 658
Eco88I CYCGRG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 3 cut(s) 311, 690, 707
EcoT22I ATGCAT 1 cut(s) 753
ErhI CCWWGG 3 cut(s) 311, 690, 707
FaeI CATG 8 cut(s) 70, 116, 223, 431, 619, 751, 755, 793
FaqI GGGAC 1 cut(s) 349
FatI CATG 8 cut(s) 66, 112, 219, 427, 615, 747, 751, 789
FokI GGATG 2 cut(s) 248, 274
FspBI CTAG 3 cut(s) 296, 768, 943
HapII CCGG 2 cut(s) 741, 912
HgaI GACGC 1 cut(s) 665
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 8 cut(s) 70, 116, 223, 431, 619, 751, 755, 793
HinfI GANTC 3 cut(s) 474, 494, 567
HpaII CCGG 2 cut(s) 741, 912
Hpy188I TCNGA 5 cut(s) 141, 396, 499, 566, 677
Hpy188III TCNNGA 4 cut(s) 56, 113, 323, 860
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 2 cut(s) 869, 877
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 8 cut(s) 28, 149, 158, 360, 445, 641, 751, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 140, 470
HpySE526I ACGT 1 cut(s) 580
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 8 cut(s) 70, 116, 223, 431, 619, 751, 755, 793
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 5 cut(s) 136, 238, 387, 534, 939
LmnI GCTCC 2 cut(s) 373, 717
LpnPI CCDG 8 cut(s) 38, 238, 243, 333, 346, 360, 754, 925
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 3 cut(s) 296, 768, 943
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 2 cut(s) 900, 916
MalI GATC 5 cut(s) 138, 240, 389, 536, 941
MboI GATC 5 cut(s) 136, 238, 387, 534, 939
MboII GAAGA 4 cut(s) 190, 664, 707, 838
MflI RGATCY 3 cut(s) 387, 534, 939
MluCI AATT 5 cut(s) 87, 132, 488, 572, 726
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 2 cut(s) 380, 544
Mph1103I ATGCAT 1 cut(s) 753
MroXI GAANNNNTTC 1 cut(s) 478
MseI TTAA 2 cut(s) 762, 807
MslI CAYNNNNRTG 1 cut(s) 614
MspI CCGG 2 cut(s) 741, 912
MspR9I CCNGG 2 cut(s) 348, 742
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 742
NdeII GATC 5 cut(s) 136, 238, 387, 534, 939
NlaIII CATG 8 cut(s) 70, 116, 223, 431, 619, 751, 755, 793
NlaIV GGNNCC 5 cut(s) 23, 365, 389, 536, 713
NmuCI GTSAC 1 cut(s) 916
NsiI ATGCAT 1 cut(s) 753
NspI RCATGY 1 cut(s) 223
NspV TTCGAA 1 cut(s) 43
PagI TCATGA 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 474, 494
PflFI GACNNNGTC 1 cut(s) 836
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PpuMI RGGWCCY 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 5 cut(s) 23, 365, 389, 536, 713
PspPI GGNCC 1 cut(s) 363
PspPPI RGGWCCY 1 cut(s) 363
PsuI RGATCY 3 cut(s) 387, 534, 939
PsyI GACNNNGTC 1 cut(s) 836
RsaI GTAC 3 cut(s) 23, 276, 345
RsaNI GTAC 3 cut(s) 22, 275, 344
RseI CAYNNNNRTG 1 cut(s) 614
SaqAI TTAA 2 cut(s) 762, 807
Sau3AI GATC 5 cut(s) 136, 238, 387, 534, 939
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 2 cut(s) 348, 742
SexAI ACCWGGT 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 43
SinI GGWCC 1 cut(s) 363
SmiMI CAYNNNNRTG 1 cut(s) 614
Sse9I AATT 5 cut(s) 87, 132, 488, 572, 726
SsiI CCGC 4 cut(s) 202, 532, 909, 937
SspI AATATT 1 cut(s) 416
SspMI CTAG 3 cut(s) 296, 768, 943
StyD4I CCNGG 2 cut(s) 346, 740
StyI CCWWGG 3 cut(s) 311, 690, 707
TaaI ACNGT 2 cut(s) 869, 877
TaiI ACGT 1 cut(s) 583
TaqI TCGA 4 cut(s) 43, 269, 462, 621
TaqII GACCGA 1 cut(s) 935
TasI AATT 5 cut(s) 87, 132, 488, 572, 726
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 2 cut(s) 474, 494
Tru1I TTAA 2 cut(s) 762, 807
Tru9I TTAA 2 cut(s) 762, 807
TscAI CASTG 1 cut(s) 938
TseFI GTSAC 1 cut(s) 916
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 2 cut(s) 26, 717
TspRI CASTG 1 cut(s) 938
Tth111I GACNNNGTC 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 2 cut(s) 488, 572
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 3 cut(s) 296, 768, 943
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.