Rmu_sc0000693.1_g000020

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000693.1
OG0000351
Physical Location & Seq
Forward (+)
92258 .. 96600
4343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000693.1_g000020.1.cds

Sequence Viewer

Length: 1083 bp
atggaaggaatgaaactatggtacttgcacaaccttcttattcaaaaagccactcccgagaccaacatggaacacattgttgaaaaaattaaaagtatggaggaatattgtcgtgattgctatgatgaaaaaattgatttgagtagtgaaaaatttatagagatgttggtggttgctggtttctttattattgaactcttccgcaagatgataggagacatgcccagaggcatggatgatcctttgttcaataggttagggatgttgccaacagtactaaatgatttggttctactagaaaaccaactgccttggagagttcttggctgcttattccatcaagtacctattggaaaattcaagtccctttgggagcttattcaaagagtccttccgagttggagaggccgtactaccttccccttcctcaccttcaccctcttctccctccctgtgaccgtcctcaacagcttgagcctcctccgggttgtggtttttctccccttcccttccgcctccagctcgatctctctctccccggcggctcgcttccttaatttcttcattttgggtgagaatctaattcagattgttgtggcccagcttaattttaccccagagctgtcagatctacttgttctcgagtgctctggtcttcccccgagagtccatggatatctggtaaggccttctcatgtaattttgttgaatgcagatgagaatgagcttgaaaaagaagaactttttattaacgctgaagagaatgaatacgaagaaggtgtagtgccagagatgaaatttgtgttgaccaaggaagacgtaacagagactggagcaccagctactctgttggttttcaataatgaagttggcttttccagggagaacatggattccatttgcggcatattccattctacaaagatggaaaagagacagcagaggttaattgaagagaatggtaccggcctctacaacattgctatttctggtctcaatgatgccttgtgggaaagaattcattgcctggttgaaactgaatttgaagaacaatgggcagatgttaggtggaagaatggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

360

Amino Acids

41.39

Weight (kDa)

4.86

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 962
AccB1I GGYRCC 1 cut(s) 962
AciI CCGC 4 cut(s) 202, 513, 542, 903
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 5 cut(s) 152, 356, 797, 1017, 1040
AcuI CTGAAG 1 cut(s) 777
AfaI GTAC 5 cut(s) 23, 276, 345, 412, 964
AfiI CCNNNNNNNGG 2 cut(s) 484, 490
AjnI CCWGG 2 cut(s) 878, 1026
AloI GAACNNNNNNTCC 2 cut(s) 878, 910
AluBI AGCT 7 cut(s) 376, 471, 522, 604, 622, 727, 842
AluI AGCT 7 cut(s) 376, 471, 522, 604, 622, 727, 842
Alw21I GWGCWC 2 cut(s) 650, 838
Alw26I GTCTC 5 cut(s) 53, 210, 821, 928, 998
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 830
Ama87I CYCGRG 3 cut(s) 56, 641, 661
AoxI GGCC 4 cut(s) 406, 597, 686, 967
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 5 cut(s) 152, 356, 797, 1017, 1040
Asp700I GAANNNNTTC 1 cut(s) 1017
Asp718I GGTACC 1 cut(s) 962
AspS9I GGNCC 1 cut(s) 598
AsuC2I CCSGG 2 cut(s) 485, 539
AsuHPI GGTGA 3 cut(s) 421, 427, 584
AvaI CYCGRG 3 cut(s) 56, 641, 661
BanI GGYRCC 1 cut(s) 962
BbsI GAAGAC 2 cut(s) 647, 822
Bbv12I GWGCWC 2 cut(s) 650, 838
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 345, 919
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 2 cut(s) 880, 1028
BcnI CCSGG 2 cut(s) 485, 539
BcoDI GTCTC 5 cut(s) 53, 210, 821, 928, 998
BfaI CTAG 1 cut(s) 296
BglII AGATCT 1 cut(s) 628
BisI GCNGC 3 cut(s) 328, 543, 904
BlsI GCNGC 3 cut(s) 329, 544, 905
BmcAI AGTACT 1 cut(s) 276
Bme1390I CCNGG 4 cut(s) 485, 539, 880, 1028
BmeT110I CYCGRG 3 cut(s) 56, 641, 661
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 1 cut(s) 964
BmrFI CCNGG 4 cut(s) 485, 539, 880, 1028
BmsI GCATC 1 cut(s) 991
BpiI GAAGAC 2 cut(s) 647, 822
BpmI CTGGAG 2 cut(s) 502, 852
BpuEI CTTGAG 1 cut(s) 493
BpuMI CCSGG 2 cut(s) 485, 539
BsaI GGTCTC 2 cut(s) 53, 998
BsaJI CCNNGG 5 cut(s) 311, 537, 670, 810, 879
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 484, 490
Bse118I RCCGGY 1 cut(s) 965
Bse1I ACTGG 1 cut(s) 835
Bse3DI GCAATG 2 cut(s) 978, 1021
BseBI CCWGG 2 cut(s) 880, 1028
BseDI CCNNGG 5 cut(s) 311, 537, 670, 810, 879
BseGI GGATG 2 cut(s) 241, 267
BseLI CCNNNNNNNGG 2 cut(s) 484, 490
BseMI GCAATG 2 cut(s) 978, 1021
BseNI ACTGG 1 cut(s) 835
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 314
BseYI CCCAGC 1 cut(s) 600
BshFI GGCC 4 cut(s) 408, 599, 688, 969
BshNI GGYRCC 1 cut(s) 962
BsiHKAI GWGCWC 2 cut(s) 650, 838
BsiHKCI CYCGRG 3 cut(s) 56, 641, 661
BsiSI CCGG 3 cut(s) 484, 539, 966
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 484, 490
BsmAI GTCTC 5 cut(s) 53, 210, 821, 928, 998
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 4 cut(s) 408, 599, 688, 969
Bso31I GGTCTC 2 cut(s) 53, 998
BsoBI CYCGRG 3 cut(s) 56, 641, 661
Bsp1286I GDGCHC 2 cut(s) 650, 838
Bsp143I GATC 3 cut(s) 238, 525, 628
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 4 cut(s) 202, 513, 542, 903
BspANI GGCC 4 cut(s) 408, 599, 688, 969
BspLI GGNNCC 1 cut(s) 964
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 962
BspTNI GGTCTC 2 cut(s) 53, 998
BsrDI GCAATG 2 cut(s) 978, 1021
BsrFI RCCGGY 1 cut(s) 965
BsrI ACTGG 1 cut(s) 835
BssAI RCCGGY 1 cut(s) 965
BssECI CCNNGG 5 cut(s) 311, 537, 670, 810, 879
BssMI GATC 3 cut(s) 238, 525, 628
BssT1I CCWWGG 3 cut(s) 311, 670, 810
Bst2UI CCWGG 2 cut(s) 880, 1028
Bst4CI ACNGT 2 cut(s) 274, 460
Bst6I CTCTTC 4 cut(s) 203, 446, 753, 948
BstC8I GCNNGC 1 cut(s) 547
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 2 cut(s) 241, 267
BstKTI GATC 3 cut(s) 241, 528, 631
BstMAI GTCTC 5 cut(s) 53, 210, 821, 928, 998
BstMBI GATC 3 cut(s) 238, 525, 628
BstNI CCWGG 2 cut(s) 880, 1028
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 4 cut(s) 483, 537, 878, 1026
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 2 cut(s) 647, 822
BstX2I RGATCY 1 cut(s) 628
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 628
BsuRI GGCC 4 cut(s) 408, 599, 688, 969
BtgI CCRYGG 1 cut(s) 670
BtsCI GGATG 2 cut(s) 241, 267
Cac8I GCNNGC 1 cut(s) 547
CaiI CAGNNNCTG 1 cut(s) 830
Cfr10I RCCGGY 1 cut(s) 965
Cfr13I GGNCC 1 cut(s) 598
Csp6I GTAC 5 cut(s) 22, 275, 344, 411, 963
CviAII CATG 6 cut(s) 67, 220, 232, 671, 695, 889
CviQI GTAC 5 cut(s) 22, 275, 344, 411, 963
DpnI GATC 3 cut(s) 240, 527, 630
DpnII GATC 3 cut(s) 238, 525, 628
Eam1104I CTCTTC 4 cut(s) 203, 446, 753, 948
EarI CTCTTC 4 cut(s) 203, 446, 753, 948
EciI GGCGGA 1 cut(s) 502
Eco130I CCWWGG 3 cut(s) 311, 670, 810
Eco147I AGGCCT 1 cut(s) 688
Eco31I GGTCTC 2 cut(s) 53, 998
Eco32I GATATC 1 cut(s) 677
Eco57I CTGAAG 1 cut(s) 777
Eco88I CYCGRG 3 cut(s) 56, 641, 661
EcoRI GAATTC 1 cut(s) 1017
EcoRII CCWGG 2 cut(s) 878, 1026
EcoRV GATATC 1 cut(s) 677
EcoT14I CCWWGG 3 cut(s) 311, 670, 810
ErhI CCWWGG 3 cut(s) 311, 670, 810
FaeI CATG 6 cut(s) 70, 223, 235, 674, 698, 892
FalI AAGNNNNNCTT 2 cut(s) 726, 758
FaqI GGGAC 1 cut(s) 349
FatI CATG 6 cut(s) 66, 219, 231, 670, 694, 888
Fnu4HI GCNGC 3 cut(s) 328, 543, 904
FokI GGATG 2 cut(s) 248, 274
Fsp4HI GCNGC 3 cut(s) 328, 543, 904
FspBI CTAG 1 cut(s) 296
GluI GCNGC 3 cut(s) 328, 543, 904
GsaI CCCAGC 1 cut(s) 604
GsuI CTGGAG 2 cut(s) 502, 852
HaeIII GGCC 4 cut(s) 408, 599, 688, 969
HapII CCGG 3 cut(s) 484, 539, 966
Hin1II CATG 6 cut(s) 70, 223, 235, 674, 698, 892
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HinfI GANTC 4 cut(s) 387, 577, 666, 893
HpaII CCGG 3 cut(s) 484, 539, 966
HphI GGTGA 3 cut(s) 421, 427, 584
Hpy166II GTNNAC 1 cut(s) 807
Hpy188I TCNGA 3 cut(s) 396, 588, 628
Hpy188III TCNNGA 3 cut(s) 56, 113, 641
Hpy8I GTNNAC 1 cut(s) 807
HpyAV CCTTC 9 cut(s) 44, 401, 427, 433, 442, 514, 519, 699, 770
HpyCH4III ACNGT 2 cut(s) 274, 460
HpyCH4IV ACGT 1 cut(s) 819
HpyCH4V TGCA 2 cut(s) 28, 713
HpySE526I ACGT 1 cut(s) 819
Hsp92II CATG 6 cut(s) 70, 223, 235, 674, 698, 892
KpnI GGTACC 1 cut(s) 966
Kzo9I GATC 3 cut(s) 238, 525, 628
LmnI GCTCC 2 cut(s) 373, 833
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 1 cut(s) 991
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 819
MaeIII GTNAC 2 cut(s) 454, 820
MalI GATC 3 cut(s) 240, 527, 630
MboI GATC 3 cut(s) 238, 525, 628
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 2 cut(s) 650, 838
MlyI GAGTC 2 cut(s) 396, 675
MmeI TCCRAC 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 1017
MseI TTAA 6 cut(s) 90, 555, 606, 750, 947, 1081
MspI CCGG 3 cut(s) 484, 539, 966
MspR9I CCNGG 4 cut(s) 485, 539, 880, 1028
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 2 cut(s) 880, 1028
NciI CCSGG 2 cut(s) 485, 539
NcoI CCATGG 1 cut(s) 670
NdeII GATC 3 cut(s) 238, 525, 628
NlaIII CATG 6 cut(s) 70, 223, 235, 674, 698, 892
NlaIV GGNNCC 1 cut(s) 964
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 641
PceI AGGCCT 1 cut(s) 688
PctI GAATGC 1 cut(s) 715
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 2 cut(s) 577, 893
PkrI GCNGC 3 cut(s) 329, 544, 905
PleI GAGTC 2 cut(s) 395, 674
PpsI GAGTC 2 cut(s) 395, 674
Psp6I CCWGG 2 cut(s) 878, 1026
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 2 cut(s) 878, 1026
PspN4I GGNNCC 1 cut(s) 964
PspPI GGNCC 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 5 cut(s) 23, 276, 345, 412, 964
RsaNI GTAC 5 cut(s) 22, 275, 344, 411, 963
SaqAI TTAA 6 cut(s) 90, 555, 606, 750, 947, 1081
SatI GCNGC 3 cut(s) 328, 543, 904
Sau3AI GATC 3 cut(s) 238, 525, 628
Sau96I GGNCC 1 cut(s) 598
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 2 cut(s) 396, 675
ScrFI CCNGG 4 cut(s) 485, 539, 880, 1028
SduI GDGCHC 2 cut(s) 650, 838
SfaNI GCATC 1 cut(s) 991
Sfr274I CTCGAG 1 cut(s) 641
SlaI CTCGAG 1 cut(s) 641
SmlI CTYRAG 2 cut(s) 472, 641
SmoI CTYRAG 2 cut(s) 472, 641
SseBI AGGCCT 1 cut(s) 688
SsiI CCGC 4 cut(s) 202, 513, 542, 903
SspI AATATT 1 cut(s) 107
SspMI CTAG 1 cut(s) 296
StuI AGGCCT 1 cut(s) 688
StyD4I CCNGG 4 cut(s) 483, 537, 878, 1026
StyI CCWWGG 3 cut(s) 311, 670, 810
TaaI ACNGT 2 cut(s) 274, 460
TaiI ACGT 1 cut(s) 822
TaqI TCGA 2 cut(s) 524, 642
TatI WGTACW 1 cut(s) 274
TauI GCSGC 2 cut(s) 545, 906
TfiI GAWTC 2 cut(s) 577, 893
Tru1I TTAA 6 cut(s) 90, 555, 606, 750, 947, 1081
Tru9I TTAA 6 cut(s) 90, 555, 606, 750, 947, 1081
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 1 cut(s) 327
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 7 cut(s) 26, 141, 553, 780, 809, 879, 1010
XapI RAATTY 5 cut(s) 152, 356, 797, 1017, 1040
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XhoI CTCGAG 1 cut(s) 641
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.