FvH4_3g29862

Nucleoredoxin

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
22957598 .. 22959226
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29862.t1

Sequence Viewer

Length: 1545 bp
ATGAGCTTGGTGAAGAATGGACCTCACTCTGTTTTCAGAATTGAGGATTATAGTGCTACATTAAAGTATAAGTGGGAGACAAAAGAGTCTGCGAATTTACTCATATCAACTCATTCTCTACAAGTGAAGCTTCTCGTGAATGATGATGAAATGGTACGCAAAGGAATGAAGCCGTTTTTATTAAAAGATTTGAGCATTTTATTCAGTGAGGGTAATGGAATCTCTTTTCTGGTTTTTGTGAAAACTGTTGAGTCAACTCTGGACATGGAGTTGGTGTTTGAAAAGAAGAATGGTTACATGGTTATTGATCATACTATTATTGAGAAGAAAGTAGAATTGGAGCTGATGGATCCTGAAAAATTTCGCAGCTCCATATCACTTGAATTTATGAATGATCTTGTGACATTAGCATCATGGCATATATATGATGAGGGAAATTTGATTGCTCAGTGGATGAGTTTGGAACAACAACCATGCCTCAAAAGTGGACAGAAACTTATTCACATGGTCTATGTATCTAACTATGCACTGAAGAGTCTATTGCATCATTGGTGTGTGGAATTCCATGCTTTGGTCTCCTGCTCACGGGACTTTGTTATTGCAATTATGGAAGGTAAGAAGATGCTTATCTCTAAACATGAAGGAAAAATGGTGGCTCTCTACTTTTCATTTTCTACATGCAGTCCATGCATAGAATTCACTCTAAGACTTGTGGGAATTTATGAAAAGGTAAAAGCTAAGGAAAAGAGCTTTGAGATTCTGTTGATATTACTTGATGAAGCAGAAGAAACACTCAAGCCAGATTTTAAGAAGCTGCCTTGGTTTACATTGGCTCAGAAGGACACCAAAACTTGTGCAAATTTGACTTGGGATTCTGAGTTCTCAAACTCACCCATTTTGGTTATTATTGGGACAGATGCTGAAAACATCCATAACAATGTTGCTGAAGCTAATGCATACATTGATGGCAAAATGTATGATTTCTCAGTCATTATGCAGTGGATGCGTGGTGCCTTAAGTTGTCATATTGCTGATATTGTCCCTATGCTAATTCATTATTGCACAAGTGCATCTGAGAAGAATTTTGCTGGTGTACATGAAGTTAGTGTTGTCTCTTGGAATGTCAATTTGCTGGCAGCTTGTGTCAAGTCTGATGATGAAATTCAGCCAAAAGTTGGGGTTCATGCACTGGAGAAAGAGAGAGACAAAAGGACCAAAGTTTTTACTGCTGGTCAAACTCTTGTGGTGTTAACAGTAGTTGGGATGCACCATTCTTCAAGTTTTGGCTTCCTAACTGGTACTAAGAAATATGTTGAAGCTGAAAAAGTGTGTGTTGATGATGAAGTTGCAAACCATGCAAGTACTAAAGCACAGGGGCTGACTACGGCACTTCTCATAAGCATGTTGATTGATGGGAAAAGGTGTAAAGGACACCGTGTGGTTATCCGAATTGCAGCTTTGAAGATTTATCTCTTTTGGTGCCTGTTGTGTAGTCTAAACTATAGTAGCTCTACTTGCACTGTCTCTCTTATAACTGAAACTTGA

Protein Analysis

515

Amino Acids

58.04

Weight (kDa)

6.33

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin_8 PF13905 215 - 306 4.6e-12 Thioredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1532
AasI GACNNNNNNGTC 1 cut(s) 85
AccB1I GGYRCC 2 cut(s) 1010, 1479
AccB7I CCANNNNNTGG 2 cut(s) 571, 1175
AclWI GGATC 2 cut(s) 344, 357
AcuI CTGAAG 2 cut(s) 551, 966
AdeI CACNNNGTG 1 cut(s) 1438
AfaI GTAC 4 cut(s) 156, 1095, 1300, 1363
AfiI CCNNNNNNNGG 3 cut(s) 571, 585, 1175
AflII CTTAAG 1 cut(s) 1015
AgsI TTSAA 5 cut(s) 281, 383, 1278, 1316, 1462
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AloI GAACNNNNNNTCC 2 cut(s) 863, 895
Alw26I GTCTC 5 cut(s) 71, 580, 1117, 1197, 1528
AlwI GGATC 2 cut(s) 344, 357
AlwNI CAGNNNCTG 2 cut(s) 920, 1378
ApeKI GCWGC 4 cut(s) 366, 814, 1136, 1454
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 20, 1212
AsuHPI GGTGA 2 cut(s) 22, 882
AvaII GGWCC 2 cut(s) 20, 1212
BamHI GGATCC 1 cut(s) 349
BanI GGYRCC 2 cut(s) 1010, 1479
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BauI CACGAG 1 cut(s) 134
BbvI GCAGC 4 cut(s) 378, 801, 1148, 1466
BccI CCATC 3 cut(s) 340, 959, 1406
BceAI ACGGC 2 cut(s) 157, 1401
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 5 cut(s) 71, 580, 1117, 1197, 1528
BfmI CTRYAG 1 cut(s) 1501
BfrI CTTAAG 1 cut(s) 1015
BisI GCNGC 4 cut(s) 367, 815, 1137, 1455
BlsI GCNGC 4 cut(s) 368, 816, 1138, 1456
BmcAI AGTACT 1 cut(s) 1363
Bme18I GGWCC 2 cut(s) 20, 1212
BmgT120I GGNCC 2 cut(s) 20, 1212
BmiI GGNNCC 3 cut(s) 351, 1012, 1481
BmsI GCATC 7 cut(s) 419, 553, 612, 907, 993, 1079, 1254
BpmI CTGGAG 1 cut(s) 1211
Bpu10I CCTNAGC 1 cut(s) 738
BpuEI CTTGAG 1 cut(s) 779
BsaBI GATNNNNATC 1 cut(s) 626
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 1 cut(s) 818
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 571, 585, 1175
Bse1I ACTGG 2 cut(s) 1194, 1300
Bse8I GATNNNNATC 1 cut(s) 626
BseDI CCNNGG 1 cut(s) 818
BseGI GGATG 4 cut(s) 459, 927, 1008, 1269
BseJI GATNNNNATC 1 cut(s) 626
BseLI CCNNNNNNNGG 3 cut(s) 571, 585, 1175
BseMII CTCAG 5 cut(s) 461, 848, 867, 999, 1065
BseNI ACTGG 2 cut(s) 1194, 1300
BseXI GCAGC 4 cut(s) 378, 801, 1148, 1466
BshNI GGYRCC 2 cut(s) 1010, 1479
BslFI GGGAC 3 cut(s) 602, 925, 1025
BslI CCNNNNNNNGG 3 cut(s) 571, 585, 1175
BsmAI GTCTC 5 cut(s) 71, 580, 1117, 1197, 1528
BsmFI GGGAC 3 cut(s) 602, 925, 1025
Bso31I GGTCTC 1 cut(s) 580
Bsp1407I TGTACA 1 cut(s) 1093
Bsp143I GATC 3 cut(s) 307, 349, 394
BspCNI CTCAG 5 cut(s) 460, 847, 868, 998, 1066
BspLI GGNNCC 3 cut(s) 351, 1012, 1481
BspPI GGATC 2 cut(s) 344, 357
BspT107I GGYRCC 2 cut(s) 1010, 1479
BspTI CTTAAG 1 cut(s) 1015
BspTNI GGTCTC 1 cut(s) 580
BsrGI TGTACA 1 cut(s) 1093
BsrI ACTGG 2 cut(s) 1194, 1300
BssECI CCNNGG 1 cut(s) 818
BssMI GATC 3 cut(s) 307, 349, 394
BssSI CACGAG 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 818
Bst2BI CACGAG 1 cut(s) 134
Bst4CI ACNGT 4 cut(s) 247, 1255, 1436, 1522
Bst6I CTCTTC 1 cut(s) 527
BstAFI CTTAAG 1 cut(s) 1015
BstAPI GCANNNNNTGC 3 cut(s) 687, 1003, 1355
BstAUI TGTACA 1 cut(s) 1093
BstC8I GCNNGC 1 cut(s) 1134
BstDEI CTNAG 8 cut(s) 447, 704, 738, 834, 876, 985, 1074, 1302
BstF5I GGATG 4 cut(s) 459, 927, 1008, 1269
BstKTI GATC 3 cut(s) 310, 352, 397
BstMAI GTCTC 5 cut(s) 71, 580, 1117, 1197, 1528
BstMBI GATC 3 cut(s) 307, 349, 394
BstMWI GCNNNNNNNGC 4 cut(s) 687, 1003, 1355, 1515
BstNSI RCATGY 2 cut(s) 681, 1405
BstSFI CTRYAG 1 cut(s) 1501
BstV1I GCAGC 4 cut(s) 378, 801, 1148, 1466
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BtsCI GGATG 4 cut(s) 459, 927, 1008, 1269
BtsI GCAGTG 1 cut(s) 1004
BtsIMutI CAGTG 6 cut(s) 211, 455, 527, 1004, 1187, 1518
Cac8I GCNNGC 1 cut(s) 1134
CaiI CAGNNNCTG 2 cut(s) 920, 1378
Cfr13I GGNCC 2 cut(s) 20, 1212
Csp6I GTAC 4 cut(s) 155, 1094, 1299, 1362
CviQI GTAC 4 cut(s) 155, 1094, 1299, 1362
DdeI CTNAG 8 cut(s) 447, 704, 738, 834, 876, 985, 1074, 1302
DpnI GATC 3 cut(s) 309, 351, 396
DpnII GATC 3 cut(s) 307, 349, 394
DraIII CACNNNGTG 1 cut(s) 1438
DrdI GACNNNNNNGTC 1 cut(s) 85
DseDI GACNNNNNNGTC 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 818
Eco31I GGTCTC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 20, 1212
Eco57I CTGAAG 2 cut(s) 551, 966
EcoRI GAATTC 2 cut(s) 560, 695
EcoT14I CCWWGG 1 cut(s) 818
EcoT22I ATGCAT 2 cut(s) 692, 958
ErhI CCWWGG 1 cut(s) 818
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 3 cut(s) 602, 925, 1025
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 4 cut(s) 367, 815, 1137, 1455
FokI GGATG 4 cut(s) 466, 914, 1015, 1276
Fsp4HI GCNGC 4 cut(s) 367, 815, 1137, 1455
GluI GCNGC 4 cut(s) 367, 815, 1137, 1455
GsuI CTGGAG 1 cut(s) 1211
HincII GTYRAC 2 cut(s) 255, 1251
HindII GTYRAC 2 cut(s) 255, 1251
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 6 cut(s) 86, 219, 251, 535, 757, 872
HpaI GTTAAC 1 cut(s) 1251
HphI GGTGA 2 cut(s) 22, 882
Hpy166II GTNNAC 5 cut(s) 255, 488, 825, 1094, 1251
Hpy188I TCNGA 6 cut(s) 38, 837, 877, 1075, 1153, 1448
Hpy188III TCNNGA 3 cut(s) 136, 260, 353
Hpy8I GTNNAC 5 cut(s) 255, 488, 825, 1094, 1251
HpyAV CCTTC 3 cut(s) 605, 635, 832
HpyCH4III ACNGT 4 cut(s) 247, 1255, 1436, 1522
HpyF10VI GCNNNNNNNGC 4 cut(s) 687, 1003, 1355, 1515
HpyF3I CTNAG 8 cut(s) 447, 704, 738, 834, 876, 985, 1074, 1302
Ksp22I TGATCA 1 cut(s) 307
KspAI GTTAAC 1 cut(s) 1251
Kzo9I GATC 3 cut(s) 307, 349, 394
LmnI GCTCC 2 cut(s) 340, 374
Lsp1109I GCAGC 4 cut(s) 378, 801, 1148, 1466
LweI GCATC 7 cut(s) 419, 553, 612, 907, 993, 1079, 1254
MaeIII GTNAC 2 cut(s) 293, 400
MalI GATC 3 cut(s) 309, 351, 396
MboI GATC 3 cut(s) 307, 349, 394
MboII GAAGA 9 cut(s) 25, 298, 337, 544, 631, 797, 1090, 1266, 1474
MflI RGATCY 1 cut(s) 349
MlyI GAGTC 3 cut(s) 95, 260, 544
MnlI CCTC 5 cut(s) 33, 37, 202, 424, 488
Mph1103I ATGCAT 2 cut(s) 692, 958
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 5 cut(s) 62, 182, 807, 1016, 1250
MslI CAYNNNNRTG 4 cut(s) 423, 552, 936, 1400
MspCI CTTAAG 1 cut(s) 1015
MwoI GCNNNNNNNGC 4 cut(s) 687, 1003, 1355, 1515
NdeII GATC 3 cut(s) 307, 349, 394
NlaIV GGNNCC 3 cut(s) 351, 1012, 1481
NmuCI GTSAC 1 cut(s) 400
NsiI ATGCAT 2 cut(s) 692, 958
NspI RCATGY 2 cut(s) 681, 1405
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 3 cut(s) 219, 757, 872
PflMI CCANNNNNTGG 2 cut(s) 571, 1175
PkrI GCNGC 4 cut(s) 368, 816, 1138, 1456
PleI GAGTC 3 cut(s) 94, 259, 543
PpsI GAGTC 3 cut(s) 94, 259, 543
PsiI TTATAA 1 cut(s) 1532
PspN4I GGNNCC 3 cut(s) 351, 1012, 1481
PspPI GGNCC 2 cut(s) 20, 1212
PstNI CAGNNNCTG 2 cut(s) 920, 1378
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 4 cut(s) 156, 1095, 1300, 1363
RsaNI GTAC 4 cut(s) 155, 1094, 1299, 1362
RseI CAYNNNNRTG 4 cut(s) 423, 552, 936, 1400
SaqAI TTAA 5 cut(s) 62, 182, 807, 1016, 1250
SatI GCNGC 4 cut(s) 367, 815, 1137, 1455
Sau3AI GATC 3 cut(s) 307, 349, 394
Sau96I GGNCC 2 cut(s) 20, 1212
ScaI AGTACT 1 cut(s) 1363
SchI GAGTC 3 cut(s) 95, 260, 544
SfaNI GCATC 7 cut(s) 419, 553, 612, 907, 993, 1079, 1254
SfcI CTRYAG 1 cut(s) 1501
SinI GGWCC 2 cut(s) 20, 1212
SmiMI CAYNNNNRTG 4 cut(s) 423, 552, 936, 1400
SmlI CTYRAG 2 cut(s) 794, 1015
SmoI CTYRAG 2 cut(s) 794, 1015
StyI CCWWGG 1 cut(s) 818
TaaI ACNGT 4 cut(s) 247, 1255, 1436, 1522
TatI WGTACW 2 cut(s) 1093, 1361
TfiI GAWTC 3 cut(s) 219, 757, 872
Tru1I TTAA 5 cut(s) 62, 182, 807, 1016, 1250
Tru9I TTAA 5 cut(s) 62, 182, 807, 1016, 1250
TscAI CASTG 6 cut(s) 211, 455, 534, 1004, 1194, 1525
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 4 cut(s) 366, 814, 1136, 1454
Tsp45I GTSAC 1 cut(s) 400
TspRI CASTG 6 cut(s) 211, 455, 534, 1004, 1194, 1525
Van91I CCANNNNNTGG 2 cut(s) 571, 1175
Vha464I CTTAAG 1 cut(s) 1015
VpaK11BI GGWCC 2 cut(s) 20, 1212
XceI RCATGY 2 cut(s) 681, 1405
XmnI GAANNNNTTC 1 cut(s) 360
ZrmI AGTACT 1 cut(s) 1363
Zsp2I ATGCAT 2 cut(s) 692, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.