Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

8809966 .. 8815288

Gene Structure 5323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACGACGGGCTCCGTTCAAGTGCAAGCTATGGGTTGTTTGAGCACGATGGATGAATATGAAATTAAAGGCATTGAGGTTCCAATAAGTGTGAGCTTGGAGGATGGATTCGATCAACTAGGCCGCGATGTTGAATTGCAATCCGAGTATGTCAAAGTGTTTGTTCTTTGGCGTGAATCCGGAACCGGTGGCCCAACCGAGTCTTTACAATTGAACTTTGATACTAGTGATGCGGGTATAGATCAAGCTACCCACTCAATTGGTTCGGATGATAAAGAAAAAGATGGAAATTGTGATGGGAGTGGAGAGTACGGAAACCGCAGCAGAAAGGGACCCATAGAAGAAAACTTATACAAAGATGATAATGCCGGTGATTTTGAGAAGATTTTTGCTGGTATACCCGAAAATGAAGACCACATGGAGGTAAAGCATATATTTCATAATATGCAAGGATTGGATGTCTATTGGAACGCTACGATAGCAGGTCTTTCGGTCAATTCTCAAGATAAGGAAGCTTTCACGTACTCTAAGAAAATGAGGCAATATGAGATGCTTCCCACGCAATTCTCTTATGCTCCTATACCGAGTTGTTGCTCAAAGCTAGCTTCTTCATTTCAAGAGAGACGAGCTTTGCTTCACCGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

215

Amino Acids

24.03

Weight (kDa)

4.68

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	397
AccII	CGCG	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	3 cut(s)	124, 233, 319
AfaI	GTAC	2 cut(s)	311, 524
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgeI	ACCGGT	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	20, 134, 214, 617
AhlI	ACTAGT	1 cut(s)	224
AluBI	AGCT	7 cut(s)	29, 96, 248, 515, 601, 605, 629
AluI	AGCT	7 cut(s)	29, 96, 248, 515, 601, 605, 629
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	616
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	2 cut(s)	121, 190
ApeKI	GCWGC	1 cut(s)	321
AsiGI	ACCGGT	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	191, 332
AsuHPI	GGTGA	2 cut(s)	383, 629
AsuNHI	GCTAGC	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	333
BccI	CCATC	4 cut(s)	43, 98, 278, 290
BcgI	CGANNNNNNTGC	2 cut(s)	471, 505
BcoDI	GTCTC	1 cut(s)	616
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	3 cut(s)	119, 225, 602
BfuAI	ACCTGC	1 cut(s)	473
BisI	GCNGC	2 cut(s)	124, 322
BlsI	GCNGC	2 cut(s)	125, 323
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	191, 332
BmiI	GGNNCC	5 cut(s)	13, 81, 184, 333, 334
BmsI	GCATC	2 cut(s)	220, 540
BmtI	GCTAGC	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	522
BsaWI	WCCGGW	2 cut(s)	179, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse118I	RCCGGY	2 cut(s)	185, 368
BseAI	TCCGGA	1 cut(s)	179
BseGI	GGATG	4 cut(s)	58, 109, 274, 463
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	123, 192
BshTI	ACCGGT	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	180, 186, 369
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	616
BsmBI	CGTCTC	1 cut(s)	616
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	123, 192
Bsp1286I	GDGCHC	2 cut(s)	14, 47
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	112, 241
BspACI	CCGC	3 cut(s)	124, 233, 319
BspANI	GGCC	2 cut(s)	123, 192
BspEI	TCCGGA	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	5 cut(s)	13, 81, 184, 333, 334
BspMI	ACCTGC	1 cut(s)	473
BspOI	GCTAGC	1 cut(s)	605
BsrFI	RCCGGY	2 cut(s)	185, 368
BssAI	RCCGGY	2 cut(s)	185, 368
BssMI	GATC	2 cut(s)	112, 241
BssNAI	GTATAC	1 cut(s)	398
Bst1107I	GTATAC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	522
BstC8I	GCNNGC	2 cut(s)	27, 603
BstDEI	CTNAG	1 cut(s)	528
BstF5I	GGATG	4 cut(s)	58, 109, 274, 463
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	115, 244
BstMAI	GTCTC	1 cut(s)	616
BstMBI	GATC	2 cut(s)	112, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 559
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstZ17I	GTATAC	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	123, 192
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	4 cut(s)	58, 109, 274, 463
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	2 cut(s)	27, 603
Cfr10I	RCCGGY	2 cut(s)	185, 368
Cfr13I	GGNCC	2 cut(s)	191, 332
Csp6I	GTAC	2 cut(s)	310, 523
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	2 cut(s)	310, 523
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	2 cut(s)	114, 243
DpnII	GATC	2 cut(s)	112, 241
Eco24I	GRGCYC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	616
FaeI	CATG	1 cut(s)	421
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	417
FauI	CCCGC	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	124, 322
FokI	GGATG	4 cut(s)	65, 116, 281, 470
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	2 cut(s)	124, 322
FspBI	CTAG	3 cut(s)	119, 225, 602
GluI	GCNGC	2 cut(s)	124, 322
HaeIII	GGCC	2 cut(s)	123, 192
HapII	CCGG	3 cut(s)	180, 186, 369
Hin1II	CATG	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	3 cut(s)	108, 176, 200
HpaII	CCGG	3 cut(s)	180, 186, 369
HphI	GGTGA	2 cut(s)	383, 629
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	145, 268
Hpy188III	TCNNGA	3 cut(s)	180, 503, 617
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	3 cut(s)	25, 139, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 559
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	1 cut(s)	521
Hsp92II	CATG	1 cut(s)	421
KflI	GGGWCCC	1 cut(s)	332
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	112, 241
LmnI	GCTCC	2 cut(s)	17, 580
LpnPI	CCDG	5 cut(s)	193, 199, 378, 382, 468
Lsp1109I	GCAGC	1 cut(s)	333
LweI	GCATC	2 cut(s)	220, 540
MaeI	CTAG	3 cut(s)	119, 225, 602
MaeII	ACGT	1 cut(s)	521
MalI	GATC	2 cut(s)	114, 243
MboI	GATC	2 cut(s)	112, 241
MboII	GAAGA	4 cut(s)	353, 394, 422, 600
MfeI	CAATTG	2 cut(s)	209, 258
MhlI	GDGCHC	2 cut(s)	14, 47
MluCI	AATT	7 cut(s)	63, 134, 209, 258, 289, 496, 563
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	70, 94, 415, 531
MroI	TCCGGA	1 cut(s)	179
MseI	TTAA	2 cut(s)	66, 646
MspI	CCGG	3 cut(s)	180, 186, 369
MunI	CAATTG	2 cut(s)	209, 258
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	479, 559
NdeII	GATC	2 cut(s)	112, 241
NheI	GCTAGC	1 cut(s)	601
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	5 cut(s)	13, 81, 184, 333, 334
PfeI	GAWTC	2 cut(s)	108, 176
PinAI	ACCGGT	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	125, 323
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	522
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
PspN4I	GGNNCC	5 cut(s)	13, 81, 184, 333, 334
PspPI	GGNCC	2 cut(s)	191, 332
PspPPI	RGGWCCY	1 cut(s)	332
RsaI	GTAC	2 cut(s)	311, 524
RsaNI	GTAC	2 cut(s)	310, 523
SaqAI	TTAA	2 cut(s)	66, 646
SatI	GCNGC	2 cut(s)	124, 322
Sau3AI	GATC	2 cut(s)	112, 241
Sau96I	GGNCC	2 cut(s)	191, 332
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	14, 47
SfaNI	GCATC	2 cut(s)	220, 540
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	7 cut(s)	63, 134, 209, 258, 289, 496, 563
SsiI	CCGC	3 cut(s)	124, 233, 319
SspMI	CTAG	3 cut(s)	119, 225, 602
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	1 cut(s)	111
TaqII	GACCGA	1 cut(s)	481
TasI	AATT	7 cut(s)	63, 134, 209, 258, 289, 496, 563
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	108, 176
Tru1I	TTAA	2 cut(s)	66, 646
Tru9I	TTAA	2 cut(s)	66, 646
TseI	GCWGC	1 cut(s)	321
TspDTI	ATGAA	5 cut(s)	69, 75, 423, 428, 600
TspGWI	ACGGA	2 cut(s)	4, 327
VpaK11BI	GGWCC	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	397
XspI	CTAG	3 cut(s)	119, 225, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.