RchiOBHm_Chr5g0082551

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
88529010 .. 88532698
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35675

Sequence Viewer

Length: 3081 bp
ATGGATTACCAGGATAAGCAATCGCAATATACTTCAGCTGGCCAACCAGAAGAACAAATTAGGTCGCTTTCCTCTTCACAAGCGGTGTCCTCTCCGATTATGACGATGGGCTCTATTCAAGCGCAAGCTATTGGTTGTTTCAGCATGATGGAGGAATGTGTTAGTGGTAACTCTCTCACTTTGCCTACTGAGTCTATGTTACCATACTCACCTGCACTTGTTGTGGTTGATTCTGGAGTGAGTATTAGTAGAGGTAAGGGTAAAATGATAGATGATGGTCGTAATTGTAACTTGGGTACTTCTTTGGGTACAAATAAGCTTATCAGTGATGCTTTGAAATCTGGGGAAGGTAGTACGGAACGGCAACAGTTTGTTCAGAACTCAAGGTTGGGGTACTCCTATCTGGAAGATCAATTACCATCACTTGATATTGGGTTAAATAGTGCCAAGTCTCAGTTAAGTACCATGGAGATGACTGCTTGTATGGTGAAGAACGAACATTTTGGGAGTAAAATTGGTAAAAATGATGAGCCTGCACTTCTAGGTTCTTTATCACAGCTACCGGAATCGATCAAATCAGTGAGCTCGCTGCCGCCGCCGTCAATTCAGACTTCTTCAGGACCAGCTCAGTTGATGTCTCCAACTAGAAGTCTTGTACCAGAGGAGGGAGATGTCGTCCAAAAGAAGACTGGTGAACTTACAGAGCTTGATAATATATCGATGATGGTAGGAAATTACTTTCAGTATGCCTTACCTAAGTGTTGTGGGTATGGAAGGGATATTGGTACATGTTCTGTGGTAAATGTTTTTAATGCATCGTGTGTAATGCTCACGCATTACATTGAGAGTCCAAAGAAGATTAGTCACTATGTACTGCAACTATGCTTCTCTGGATTTGATAAGAAGGTTCGTGATAAAGGTAGTACTCTCTTAACAAATGAACTTTTTATGGAGTACTTTGCAGGGACAATGGCATCTGGTAATAGCTTGAAATTTATCTTTTCACTAATAATGACTTTGATTGAATTATGGAGTTATGGATATGTTGAGAAAAATATAAGATGGTTTACCAAAATTTCAGTGATTAGTTTTGGAAATGGATGCTGCGATTTCCACCATGATCATGGGCTTATCTCTTGTGGCATTGAATTCAATAGTTTCTTGGTGAATAGAAATGATGGACACATAGTTGTTCTATGCCCCAACATGTTCAGAGATGGGGTTAATTTGGAGTATCAGTGGGAAACAAAAGGATCTGGGCAATTGCTTATGGTGGCTCGTCCTCTGCATGTGAAGCTTCTTAAGAATGATGTGCTGGTTTCGAATCAGTTCTATGGGTTTGTAAAGGAGTTGGAGAAAGCACTTGCTATTTTACTTGTGAGTTTCCTCAAAATTACGGTAGATATTAGAAAGCAGATTGAGCTTCTTCACGGGCAAGCGAAAAGGGCAGACTTGTATATTGACCTTAAGGAGGTGAAAAGGAGAGAAGAGCTTCTGGTATTGATGGGGAGTAACAACGAGAGGAACAAGAAGAACAAAGGGTCTATAGACTTGGTTATTAAGGAAGTTATTGATTTTGTCCAGATCAACTTAGCGTTCTCATCTTCGAGGTACTTTTCTGGTCTAGTTGTTCCAATAACTACTTTTGTTATTCAAGCTGTGCTAGTTGGAAATGTCTCACATGTTTTTGGAACTTTGAGTGTTTTTCTTGTCAATAAACTTAATCACAAGAAGGAATCACTTGAGGTTATTTGCCTTGCGACCATCTTCTTTGTTACTTACGTATTGTCTCTGCATATGCAACTTGTGGACAAATGTATGCCACCTCAAATAGTGGAGTTTACTCAACATTACATAACAAAGAAAGAGTTGGTCACTTTTTGGATTTGGGTTCCTACAGCACTGTCAAGTTCAAAACTTATTTTTTATATTGAATCTCATATCACTCCCACTGGAGCAATTGCTACTGGACTTGTTTTCTACTCTGGTGAAGACTTGCACATTACCAACTCAGATTCACATATGGCTCACTATAACATGTGTTTGCGGCACACAAAGTGCAAGGTGAGGGATATAATAAGCAACATTTGTTTGAGAAGCTCAATGACTTATGAGGAAGAGATTTCAAAGCTAGAGGCAGAAGCTCAAAAGCAAACAGGGAGTGGTAGACTAATTGTGGTATGCAATTTAAACAATCTCATATCCTTTGTTTCATATTGCAATTCCATGGTTTTCGTAGATAATGATTTTGAAAGTGAAGACTTCACACTGCAAGGTTCTACACTCTGTAATAGATATTATGATCGTTCCTCGTCTTCTCAATCCATAATTACCAAAATCTCAGATGAATTTCGATTCCCCAAAAGTGGAAAGGAGCTTATTCACGTAGCCCTTATACCTAACTATGCACTGAAGAGTCTATTGCATCAATGTTCCAGAAGTTGGATCATCACCATTATCTTCATATTCTTTTACATTTCTATTGTAAAAGCTGCAAATGATACTGTGAAGTTAACAGCTGAGTTTCTGGTGATTCTTGATATCGAGAACTACTTTTGGGACGCAATTGAGTCATGGTTAAATGGAACTCTTGGAAAAAATGGTTCTTGTGAGATTAAATGGGGTGGCAATTTTACTAAACAAGGATCATTGGATTATGGTGCAGACTTTGGGTTTGGACTTTACATTGATCACCATAATCACTTGGGTTACTTTCTATATGGCATTTCGGTGCTTGCTAAGATTGAACTGGAATGGGAGATGAGGTATAAGCCTCAAGTTGATTCACTTGCTGCAGATTTCATGAACCTGGACAAGAGGACAGATTTCTATTATTCCCTGGTGAGATGCTTTGATTTGTGTAAACTGCATTCATGGGCAGGAGGGGTGACTTACAAGGAAACAATGCAGGATGGTTATGTAATTTCAAAATTCTGGTTTGAGATTGTGGCTATTTGTTTGAGCAGCAGATTATTCCTTAAACTTGAGGTCAAGTTTCAATTGAAGAGGGGTGGTGTTGTTAGGACCCAACTATGTGATCAACCGAGCCCAACTTGTATCCAGGCCCAGAATCCTGTGTAG

Protein Analysis

1026

Amino Acids

115.19

Weight (kDa)

6.41

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro81C PF17652 844 - 968 1.9e-27 Glycosyl hydrolase family 81 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc36I ACCTGC 1 cut(s) 220
AccB7I CCANNNNNTGG 1 cut(s) 2442
AccI GTMKAC 1 cut(s) 2167
AciI CCGC 4 cut(s) 83, 593, 596, 2047
AclWI GGATC 3 cut(s) 1261, 2453, 2653
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 5 cut(s) 992, 1074, 1148, 2348, 2930
AcuI CTGAAG 3 cut(s) 18, 600, 2432
AdeI CACNNNGTG 1 cut(s) 2058
AfiI CCNNNNNNNGG 4 cut(s) 665, 1471, 2366, 2442
AflII CTTAAG 2 cut(s) 1301, 1466
AflIII ACRYGT 4 cut(s) 788, 1206, 1681, 2037
AjnI CCWGG 4 cut(s) 9, 2808, 2838, 3060
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 4 cut(s) 456, 642, 1681, 1794
AlwI GGATC 3 cut(s) 1261, 2453, 2653
AoxI GGCC 2 cut(s) 40, 3063
ApeKI GCWGC 5 cut(s) 589, 1104, 2492, 2792, 2964
ApoI RAATTY 5 cut(s) 992, 1074, 1148, 2348, 2930
ArsI GACNNNNNNTTYG 2 cut(s) 2657, 2689
Asp700I GAANNNNTTC 2 cut(s) 1328, 1491
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 3 cut(s) 620, 3024, 3064
AsuII TTCGAA 1 cut(s) 1322
AvaII GGWCC 2 cut(s) 620, 3024
BalI TGGCCA 1 cut(s) 42
BanII GRGCYC 3 cut(s) 113, 587, 3050
BarI GAAGNNNNNNTAC 2 cut(s) 399, 431
BbsI GAAGAC 4 cut(s) 692, 1998, 2265, 2307
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 5 cut(s) 576, 1091, 2479, 2779, 2976
BceAI ACGGC 2 cut(s) 377, 583
BciT130I CCWGG 4 cut(s) 11, 2810, 2840, 3062
BciVI GTATCC 1 cut(s) 3068
BclI TGATCA 3 cut(s) 1120, 2689, 3037
BcoDI GTCTC 4 cut(s) 456, 642, 1681, 1794
BfaI CTAG 5 cut(s) 542, 645, 1625, 1664, 2132
BfmI CTRYAG 3 cut(s) 1545, 1896, 2793
BfrI CTTAAG 2 cut(s) 1301, 1466
BfuAI ACCTGC 1 cut(s) 220
BfuI GTATCC 1 cut(s) 3068
BisI GCNGC 8 cut(s) 590, 593, 596, 1105, 2048, 2493, 2793, 2965
BlsI GCNGC 8 cut(s) 591, 594, 597, 1106, 2049, 2494, 2794, 2966
BmcAI AGTACT 2 cut(s) 925, 956
Bme1390I CCNGG 4 cut(s) 11, 2810, 2840, 3062
Bme18I GGWCC 2 cut(s) 620, 3024
BmgT120I GGNCC 3 cut(s) 620, 3024, 3064
BmiI GGNNCC 2 cut(s) 1893, 3026
BmrFI CCNGG 4 cut(s) 11, 2810, 2840, 3062
BmsI GCATC 6 cut(s) 319, 824, 983, 1091, 2434, 2837
BpiI GAAGAC 4 cut(s) 692, 1998, 2265, 2307
BpmI CTGGAG 2 cut(s) 255, 1974
Bpu14I TTCGAA 1 cut(s) 1322
BpuEI CTTGAG 4 cut(s) 367, 1763, 2760, 3005
Bsa29I ATCGAT 2 cut(s) 569, 719
BsaAI YACGTR 2 cut(s) 1783, 2386
BsaJI CCNNGG 3 cut(s) 465, 2226, 2838
BsaWI WCCGGW 1 cut(s) 562
BsaXI ACNNNNNCTCC 6 cut(s) 660, 690, 1223, 1253, 2750, 2780
Bsc4I CCNNNNNNNGG 4 cut(s) 665, 1471, 2366, 2442
Bse1I ACTGG 4 cut(s) 694, 1957, 1972, 2754
BseBI CCWGG 4 cut(s) 11, 2810, 2840, 3062
BseCI ATCGAT 2 cut(s) 569, 719
BseDI CCNNGG 3 cut(s) 465, 2226, 2838
BseGI GGATG 2 cut(s) 1106, 2917
BseLI CCNNNNNNNGG 4 cut(s) 665, 1471, 2366, 2442
BseMII CTCAG 6 cut(s) 180, 467, 641, 2025, 2355, 2511
BseNI ACTGG 4 cut(s) 694, 1957, 1972, 2754
BseRI GAGGAG 1 cut(s) 677
BseXI GCAGC 5 cut(s) 576, 1091, 2479, 2779, 2976
BsgI GTGCAG 3 cut(s) 198, 519, 2682
BshFI GGCC 2 cut(s) 42, 3065
BshVI ATCGAT 2 cut(s) 569, 719
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 2 cut(s) 979, 2573
BslI CCNNNNNNNGG 4 cut(s) 665, 1471, 2366, 2442
BsmAI GTCTC 4 cut(s) 456, 642, 1681, 1794
BsmFI GGGAC 2 cut(s) 979, 2573
BsmI GAATGC 1 cut(s) 2869
BsnI GGCC 2 cut(s) 42, 3065
Bsp119I TTCGAA 1 cut(s) 1322
Bsp1286I GDGCHC 3 cut(s) 113, 587, 3050
Bsp19I CCATGG 2 cut(s) 465, 2226
BspACI CCGC 4 cut(s) 83, 593, 596, 2047
BspANI GGCC 2 cut(s) 42, 3065
BspCNI CTCAG 6 cut(s) 181, 466, 640, 2024, 2354, 2512
BspDI ATCGAT 2 cut(s) 569, 719
BspHI TCATGA 1 cut(s) 2802
BspLI GGNNCC 2 cut(s) 1893, 3026
BspMAI CTGCAG 1 cut(s) 2797
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 3 cut(s) 1261, 2453, 2653
BspQI GCTCTTC 1 cut(s) 1482
BspT104I TTCGAA 1 cut(s) 1322
BspTI CTTAAG 2 cut(s) 1301, 1466
BsrI ACTGG 4 cut(s) 694, 1957, 1972, 2754
BssECI CCNNGG 3 cut(s) 465, 2226, 2838
BssT1I CCWWGG 2 cut(s) 465, 2226
Bst2UI CCWGG 4 cut(s) 11, 2810, 2840, 3062
Bst4CI ACNGT 4 cut(s) 369, 1399, 1905, 2506
Bst6I CTCTTC 5 cut(s) 79, 1482, 2112, 2408, 2999
BstAFI CTTAAG 2 cut(s) 1301, 1466
BstBAI YACGTR 2 cut(s) 1783, 2386
BstBI TTCGAA 1 cut(s) 1322
BstC8I GCNNGC 6 cut(s) 40, 126, 534, 587, 1437, 2736
BstDEI CTNAG 9 cut(s) 189, 453, 627, 756, 1591, 2011, 2341, 2520, 2739
BstDSI CCRYGG 2 cut(s) 465, 2226
BstENI CCTNNNNNAGG 1 cut(s) 1469
BstF5I GGATG 2 cut(s) 1106, 2917
BstHHI GCGC 1 cut(s) 124
BstMAI GTCTC 4 cut(s) 456, 642, 1681, 1794
BstMWI GCNNNNNNNGC 4 cut(s) 595, 1294, 1420, 1445
BstNI CCWGG 4 cut(s) 11, 2810, 2840, 3062
BstNSI RCATGY 5 cut(s) 792, 1210, 1292, 1685, 2041
BstSCI CCNGG 4 cut(s) 9, 2808, 2838, 3060
BstSFI CTRYAG 3 cut(s) 1545, 1896, 2793
BstSNI TACGTA 1 cut(s) 1783
BstV1I GCAGC 5 cut(s) 576, 1091, 2479, 2779, 2976
BstV2I GAAGAC 4 cut(s) 692, 1998, 2265, 2307
BstX2I RGATCY 1 cut(s) 1253
BstXI CCANNNNNNTGG 1 cut(s) 1124
BstYI RGATCY 1 cut(s) 1253
Bsu15I ATCGAT 2 cut(s) 569, 719
BsuI GTATCC 1 cut(s) 3068
BsuRI GGCC 2 cut(s) 42, 3065
BsuTUI ATCGAT 2 cut(s) 569, 719
BtgI CCRYGG 2 cut(s) 465, 2226
BtsCI GGATG 2 cut(s) 1106, 2917
BtsI GCAGTG 1 cut(s) 2267
BtsIMutI CAGTG 8 cut(s) 331, 585, 1086, 1244, 1901, 1950, 2267, 2408
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 6 cut(s) 40, 126, 534, 587, 1437, 2736
CciI TCATGA 1 cut(s) 2802
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 3 cut(s) 620, 3024, 3064
ClaI ATCGAT 2 cut(s) 569, 719
CseI GACGC 1 cut(s) 2570
DdeI CTNAG 9 cut(s) 189, 453, 627, 756, 1591, 2011, 2341, 2520, 2739
DraI TTTAAA 1 cut(s) 2190
DraIII CACNNNGTG 1 cut(s) 2058
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 5 cut(s) 79, 1482, 2112, 2408, 2999
EarI CTCTTC 5 cut(s) 79, 1482, 2112, 2408, 2999
Ecl136II GAGCTC 1 cut(s) 585
Eco105I TACGTA 1 cut(s) 1783
Eco130I CCWWGG 2 cut(s) 465, 2226
Eco24I GRGCYC 3 cut(s) 113, 587, 3050
Eco32I GATATC 1 cut(s) 2542
Eco47I GGWCC 2 cut(s) 620, 3024
Eco53kI GAGCTC 1 cut(s) 585
Eco57I CTGAAG 3 cut(s) 18, 600, 2432
EcoICRI GAGCTC 1 cut(s) 585
EcoNI CCTNNNNNAGG 1 cut(s) 1469
EcoO109I RGGNCCY 1 cut(s) 3024
EcoRI GAATTC 1 cut(s) 1148
EcoRII CCWGG 4 cut(s) 9, 2808, 2838, 3060
EcoRV GATATC 1 cut(s) 2542
EcoT14I CCWWGG 2 cut(s) 465, 2226
EcoT22I ATGCAT 1 cut(s) 817
EcoT38I GRGCYC 3 cut(s) 113, 587, 3050
ErhI CCWWGG 2 cut(s) 465, 2226
FaqI GGGAC 2 cut(s) 979, 2573
FauNDI CATATG 2 cut(s) 1797, 2022
FbaI TGATCA 3 cut(s) 1120, 2689, 3037
FblI GTMKAC 1 cut(s) 2167
Fnu4HI GCNGC 8 cut(s) 590, 593, 596, 1105, 2048, 2493, 2793, 2965
FokI GGATG 2 cut(s) 1113, 2924
FriOI GRGCYC 3 cut(s) 113, 587, 3050
Fsp4HI GCNGC 8 cut(s) 590, 593, 596, 1105, 2048, 2493, 2793, 2965
FspBI CTAG 5 cut(s) 542, 645, 1625, 1664, 2132
GlaI GCGC 1 cut(s) 123
GluI GCNGC 8 cut(s) 590, 593, 596, 1105, 2048, 2493, 2793, 2965
GsuI CTGGAG 2 cut(s) 255, 1974
HaeIII GGCC 2 cut(s) 42, 3065
HapII CCGG 1 cut(s) 563
HgaI GACGC 1 cut(s) 2570
HhaI GCGC 1 cut(s) 124
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 2514
HindII GTYRAC 1 cut(s) 2514
HindIII AAGCTT 2 cut(s) 317, 1295
HpaI GTTAAC 1 cut(s) 2514
HpaII CCGG 1 cut(s) 563
Hpy166II GTNNAC 7 cut(s) 695, 1068, 1810, 1842, 2168, 2514, 2864
Hpy188I TCNGA 6 cut(s) 96, 378, 609, 1214, 2014, 2344
Hpy8I GTNNAC 7 cut(s) 695, 1068, 1810, 1842, 2168, 2514, 2864
HpyAV CCTTC 4 cut(s) 341, 768, 898, 1726
HpyCH4III ACNGT 4 cut(s) 369, 1399, 1905, 2506
HpyCH4IV ACGT 2 cut(s) 1782, 2385
HpyF10VI GCNNNNNNNGC 4 cut(s) 595, 1294, 1420, 1445
HpyF3I CTNAG 9 cut(s) 189, 453, 627, 756, 1591, 2011, 2341, 2520, 2739
HpySE526I ACGT 2 cut(s) 1782, 2385
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 3 cut(s) 1120, 2689, 3037
KspAI GTTAAC 1 cut(s) 2514
LguI GCTCTTC 1 cut(s) 1482
LmnI GCTCC 2 cut(s) 1955, 2374
Lsp1109I GCAGC 5 cut(s) 576, 1091, 2479, 2779, 2976
LweI GCATC 6 cut(s) 319, 824, 983, 1091, 2434, 2837
MaeI CTAG 5 cut(s) 542, 645, 1625, 1664, 2132
MaeII ACGT 2 cut(s) 1782, 2385
MaeIII GTNAC 9 cut(s) 167, 198, 287, 863, 1511, 1774, 1873, 2708, 2887
MfeI CAATTG 4 cut(s) 1262, 1959, 2565, 2999
MflI RGATCY 1 cut(s) 1253
MhlI GDGCHC 3 cut(s) 113, 587, 3050
MlsI TGGCCA 1 cut(s) 42
MluNI TGGCCA 1 cut(s) 42
MlyI GAGTC 4 cut(s) 200, 856, 2425, 2579
MmeI TCCRAC 4 cut(s) 665, 1332, 1648, 2423
Mox20I TGGCCA 1 cut(s) 42
Mph1103I ATGCAT 1 cut(s) 817
MroXI GAANNNNTTC 2 cut(s) 1328, 1491
MscI TGGCCA 1 cut(s) 42
MslI CAYNNNNRTG 3 cut(s) 470, 1122, 2729
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 38, 2519
MspCI CTTAAG 2 cut(s) 1301, 1466
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 4 cut(s) 11, 2810, 2840, 3062
MunI CAATTG 4 cut(s) 1262, 1959, 2565, 2999
Mva1269I GAATGC 1 cut(s) 2869
MvaI CCWGG 4 cut(s) 11, 2810, 2840, 3062
MwoI GCNNNNNNNGC 4 cut(s) 595, 1294, 1420, 1445
NcoI CCATGG 2 cut(s) 465, 2226
NdeI CATATG 2 cut(s) 1797, 2022
NlaIV GGNNCC 2 cut(s) 1893, 3026
NmuCI GTSAC 3 cut(s) 863, 1873, 2887
NsiI ATGCAT 1 cut(s) 817
NspI RCATGY 5 cut(s) 792, 1210, 1292, 1685, 2041
NspV TTCGAA 1 cut(s) 1322
PagI TCATGA 1 cut(s) 2802
PaqCI CACCTGC 1 cut(s) 220
PciI ACATGT 4 cut(s) 788, 1206, 1681, 2037
PciSI GCTCTTC 1 cut(s) 1482
PctI GAATGC 1 cut(s) 2869
PdmI GAANNNNTTC 2 cut(s) 1328, 1491
PflMI CCANNNNNTGG 1 cut(s) 2442
PkrI GCNGC 8 cut(s) 591, 594, 597, 1106, 2049, 2494, 2794, 2966
PleI GAGTC 4 cut(s) 199, 855, 2424, 2578
PpsI GAGTC 4 cut(s) 199, 855, 2424, 2578
Ppu21I YACGTR 2 cut(s) 1783, 2386
PpuMI RGGWCCY 1 cut(s) 3024
PscI ACATGT 4 cut(s) 788, 1206, 1681, 2037
Psp124BI GAGCTC 1 cut(s) 587
Psp5II RGGWCCY 1 cut(s) 3024
Psp6I CCWGG 4 cut(s) 9, 2808, 2838, 3060
PspGI CCWGG 4 cut(s) 9, 2808, 2838, 3060
PspN4I GGNNCC 2 cut(s) 1893, 3026
PspPI GGNCC 3 cut(s) 620, 3024, 3064
PspPPI RGGWCCY 1 cut(s) 3024
PstI CTGCAG 1 cut(s) 2797
PsuI RGATCY 1 cut(s) 1253
PvuII CAGCTG 2 cut(s) 38, 2519
RseI CAYNNNNRTG 3 cut(s) 470, 1122, 2729
SacI GAGCTC 1 cut(s) 587
SapI GCTCTTC 1 cut(s) 1482
SatI GCNGC 8 cut(s) 590, 593, 596, 1105, 2048, 2493, 2793, 2965
Sau96I GGNCC 3 cut(s) 620, 3024, 3064
ScaI AGTACT 2 cut(s) 925, 956
SchI GAGTC 4 cut(s) 200, 856, 2425, 2579
ScrFI CCNGG 4 cut(s) 11, 2810, 2840, 3062
SduI GDGCHC 3 cut(s) 113, 587, 3050
SfaNI GCATC 6 cut(s) 319, 824, 983, 1091, 2434, 2837
SfcI CTRYAG 3 cut(s) 1545, 1896, 2793
SfuI TTCGAA 1 cut(s) 1322
SinI GGWCC 2 cut(s) 620, 3024
SmiMI CAYNNNNRTG 3 cut(s) 470, 1122, 2729
SmlI CTYRAG 6 cut(s) 382, 1301, 1466, 1742, 2775, 2984
SmoI CTYRAG 6 cut(s) 382, 1301, 1466, 1742, 2775, 2984
SnaBI TACGTA 1 cut(s) 1783
SsiI CCGC 4 cut(s) 83, 593, 596, 2047
SspMI CTAG 5 cut(s) 542, 645, 1625, 1664, 2132
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 4 cut(s) 9, 2808, 2838, 3060
StyI CCWWGG 2 cut(s) 465, 2226
TaaI ACNGT 4 cut(s) 369, 1399, 1905, 2506
TaiI ACGT 2 cut(s) 1785, 2388
TaqI TCGA 6 cut(s) 569, 719, 1322, 1607, 2353, 2544
TatI WGTACW 3 cut(s) 871, 923, 954
TauI GCSGC 3 cut(s) 595, 598, 2050
TscAI CASTG 8 cut(s) 331, 585, 1086, 1244, 1908, 1957, 2274, 2415
TseFI GTSAC 3 cut(s) 863, 1873, 2887
TseI GCWGC 5 cut(s) 589, 1104, 2492, 2792, 2964
Tsp45I GTSAC 3 cut(s) 863, 1873, 2887
TspDTI ATGAA 7 cut(s) 954, 2202, 2361, 2452, 2791, 2819, 2862
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 8 cut(s) 331, 585, 1086, 1244, 1908, 1957, 2274, 2415
Van91I CCANNNNNTGG 1 cut(s) 2442
Vha464I CTTAAG 2 cut(s) 1301, 1466
VpaK11BI GGWCC 2 cut(s) 620, 3024
XagI CCTNNNNNAGG 1 cut(s) 1469
XapI RAATTY 5 cut(s) 992, 1074, 1148, 2348, 2930
XceI RCATGY 5 cut(s) 792, 1210, 1292, 1685, 2041
XcmI CCANNNNNNNNNTGG 2 cut(s) 686, 1121
XmiI GTMKAC 1 cut(s) 2167
XmnI GAANNNNTTC 2 cut(s) 1328, 1491
XspI CTAG 5 cut(s) 542, 645, 1625, 1664, 2132
ZrmI AGTACT 2 cut(s) 925, 956
Zsp2I ATGCAT 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.