Rh3AG243900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000779
Physical Location & Seq
Forward (+)
25673264 .. 25673611
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG243900.1

Sequence Viewer

Length: 348 bp
ATGTGGTATCAGAGCCCATCGATTGGGCCGATAGGGCAAGGGCCACCGCAGTTGTCTGTTGCGGCGGCGCAATGTCGGGTTTCACCTGGTTTTGCTCCGACGAGAACGGCGGTGTTGGACAGCAGCTCTGCTCAACCTACTGGTACATACACTGGTTTCTCTCTCTATTCGCATTCGTATACACCACAGATTCCACCACCGCAATACTACCCACCATCACAATCGTTCACCCAAAATCCTCAATTTCACACTCAGATTAGTAGTATGGTCGATTCCACCCACTCCGTTTCCCCAATAAATTCTCATATGACCCATTCCGTTTATTCACTGACTACCACAAACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.4

Weight (kDa)

6.95

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 23
AccI GTMKAC 1 cut(s) 179
AciI CCGC 5 cut(s) 47, 62, 65, 110, 200
AcsI RAATTY 1 cut(s) 298
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 23
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
AoxI GGCC 2 cut(s) 26, 41
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 298
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 26, 41
AsuHPI GGTGA 2 cut(s) 75, 220
BanII GRGCYC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 135
BccI CCATC 2 cut(s) 25, 223
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 34
BisI GCNGC 3 cut(s) 63, 66, 124
BlsI GCNGC 3 cut(s) 64, 67, 125
Bme1390I CCNGG 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 26, 41
BmrFI CCNGG 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 2 cut(s) 145, 157
Bse3DI GCAATG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 87
BseCI ATCGAT 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 2 cut(s) 145, 157
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 2 cut(s) 28, 43
BshVI ATCGAT 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 23
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 2 cut(s) 28, 43
Bsp1286I GDGCHC 1 cut(s) 17
BspACI CCGC 5 cut(s) 47, 62, 65, 110, 200
BspANI GGCC 2 cut(s) 28, 43
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 77
BsrI ACTGG 2 cut(s) 145, 157
BssNAI GTATAC 1 cut(s) 180
Bst1107I GTATAC 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 135
BstZ17I GTATAC 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 20
BsuRI GGCC 2 cut(s) 28, 43
BsuTUI ATCGAT 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 150, 326
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 26, 41
ClaI ATCGAT 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 85
Csp6I GTAC 1 cut(s) 144
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviJI RGCY 4 cut(s) 15, 28, 43, 126
CviKI_1 RGCY 4 cut(s) 15, 28, 43, 126
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 17
FaiI YATR 5 cut(s) 148, 180, 266, 306, 308
FauNDI CATATG 1 cut(s) 306
FblI GTMKAC 1 cut(s) 179
Fnu4HI GCNGC 3 cut(s) 63, 66, 124
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 63, 66, 124
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 63, 66, 124
HaeIII GGCC 2 cut(s) 28, 43
HhaI GCGC 1 cut(s) 70
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 2 cut(s) 190, 272
HphI GGTGA 2 cut(s) 75, 220
Hpy166II GTNNAC 2 cut(s) 180, 228
Hpy188I TCNGA 3 cut(s) 12, 99, 255
Hpy8I GTNNAC 2 cut(s) 180, 228
Hpy99I CGWCG 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 252
HspAI GCGC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 72, 99, 126, 138
Lsp1109I GCAGC 1 cut(s) 135
MabI ACCWGGT 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 242, 298
MmeI TCCRAC 2 cut(s) 96, 122
MnlI CCTC 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeI CATATG 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 190, 272
PflMI CCANNNNNTGG 1 cut(s) 23
PkrI GCNGC 3 cut(s) 64, 67, 125
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspPI GGNCC 2 cut(s) 26, 41
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SatI GCNGC 3 cut(s) 63, 66, 124
Sau96I GGNCC 2 cut(s) 26, 41
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 17
SetI ASST 3 cut(s) 88, 128, 139
SexAI ACCWGGT 1 cut(s) 85
SgeI CNNG 7 cut(s) 50, 89, 98, 99, 114, 153, 165
Sse9I AATT 2 cut(s) 242, 298
SsiI CCGC 5 cut(s) 47, 62, 65, 110, 200
StyD4I CCNGG 1 cut(s) 85
TaqI TCGA 2 cut(s) 20, 270
TasI AATT 2 cut(s) 242, 298
TauI GCSGC 2 cut(s) 65, 68
TfiI GAWTC 2 cut(s) 190, 272
TscAI CASTG 2 cut(s) 157, 333
TseI GCWGC 1 cut(s) 123
TspGWI ACGGA 2 cut(s) 274, 307
TspRI CASTG 2 cut(s) 157, 333
Van91I CCANNNNNTGG 1 cut(s) 23
XapI RAATTY 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.