Rh1AG005600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000779
Physical Location & Seq
Forward (+)
763773 .. 764681
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG005600.1

Sequence Viewer

Length: 909 bp
ATGCATCCGCATCTTCTTGGGGTATGGAGTCGTTTCTCTCAATTCTCGGATGAAAATACAGGATTAATTCAACCTCCAGTGTCTGAAGGAGGAGATCGAAGTGAACATGATTGTCAAGAGAATATTTTGCCAATTGAAAACGCAAAATTTGAATCTACCGTCTCAATTTCTGAGGCTATAGAATCTCTAGTCTATGACGATAATTTGGGATTTATTGCCTCATCAGCACCACCAATTGGCTCACTTTTTCCAATAACTCTGCCTCCGGTACCTTCCCCGACACTAGCTTTTGAAATATTGTCAAGTTCAATGCATAACAAGGTACCAAGCGGTTTCCCCTCTGTAGCCACACTTCTAGGTCATTTTTCACAACTGCTACCACCCATCGAATCAGTGAGCTTGTTTGGATTTGATAAGAAGGTACGTGACAAAGGTGGTGGCCACACTCTCTTAACAGATGAATTTTCTATCCCGAATAGAAAGTTTGCAGGGAATATGAGGCTACTTTGGGTTGATTTTCGTGTACTGAAAGCATTTGTTGTAGAAAACTCCAATGATCCTGACGCAGGTGTCAATGATGTGCTGAATGAGGTTCTCCGTTTCTTGAACAAGCGTCCTGAGAGTCGTGCACATGTTCAATCTCCTAGCAGCCAACCAATTGTAGCTGAATCTGAGGAGCGAAGTAAAGAATTGATTCATCACCGGGTAGATAAGGAAGTAGAGGTTGAGCTATTTCTAGCAGCAGGATTCAGTGCTAGTGAGGGAGAAGGAATCAATTCTCCATGGGATGAAGAACATATTCCACAAGAAATTGTTAGTACGAAACCTAATCCAAGAATTATTGTGCAGCAATATGAATATTCAATTATTGGAGCTTTGATTGATGTCTTAAAGGTTGTTGGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

302

Amino Acids

33.31

Weight (kDa)

4.89

Isoelectric Point (pI)

59.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 557
AasI GACNNNNNNGTC 1 cut(s) 569
Acc36I ACCTGC 1 cut(s) 557
Acc65I GGTACC 2 cut(s) 268, 322
AccB1I GGYRCC 2 cut(s) 268, 322
AccB7I CCANNNNNTGG 1 cut(s) 236
AciI CCGC 2 cut(s) 8, 330
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 2 cut(s) 146, 461
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 5 cut(s) 270, 324, 423, 525, 820
AfiI CCNNNNNNNGG 2 cut(s) 236, 566
AflIII ACRYGT 1 cut(s) 631
AgsI TTSAA 8 cut(s) 71, 137, 152, 293, 309, 607, 638, 864
AluBI AGCT 5 cut(s) 287, 399, 665, 730, 875
AluI AGCT 5 cut(s) 287, 399, 665, 730, 875
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 166
Alw44I GTGCAC 1 cut(s) 627
AlwI GGATC 1 cut(s) 551
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 1 cut(s) 439
ApaLI GTGCAC 1 cut(s) 627
ApeKI GCWGC 3 cut(s) 648, 740, 847
ApoI RAATTY 2 cut(s) 146, 461
AseI ATTAAT 1 cut(s) 65
Asp700I GAANNNNTTC 3 cut(s) 693, 775, 798
Asp718I GGTACC 2 cut(s) 268, 322
AsuC2I CCSGG 1 cut(s) 704
AsuHPI GGTGA 1 cut(s) 692
BaeGI GKGCMC 1 cut(s) 631
BalI TGGCCA 1 cut(s) 441
BanI GGYRCC 2 cut(s) 268, 322
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 3 cut(s) 660, 752, 859
BccI CCATC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 704
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 6 cut(s) 188, 284, 356, 645, 737, 756
BfmI CTRYAG 2 cut(s) 177, 342
BfuAI ACCTGC 1 cut(s) 557
BisI GCNGC 3 cut(s) 649, 741, 848
BlsI GCNGC 3 cut(s) 650, 742, 849
Bme1390I CCNGG 1 cut(s) 704
BmiI GGNNCC 2 cut(s) 270, 324
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 2 cut(s) 13, 19
BpmI CTGGAG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 704
BsaAI YACGTR 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 782
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 566
Bse1I ACTGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 782
BseGI GGATG 3 cut(s) 4, 55, 793
BseLI CCNNNNNNNGG 2 cut(s) 236, 566
BseMII CTCAG 3 cut(s) 162, 609, 663
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 105, 689
BseSI GKGCMC 1 cut(s) 631
BseXI GCAGC 3 cut(s) 660, 752, 859
BsgI GTGCAG 1 cut(s) 866
BshFI GGCC 1 cut(s) 441
BshNI GGYRCC 2 cut(s) 268, 322
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 2 cut(s) 266, 703
BslI CCNNNNNNNGG 2 cut(s) 236, 566
BsmAI GTCTC 1 cut(s) 166
BsmBI CGTCTC 1 cut(s) 166
BsnI GGCC 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 631
Bsp143I GATC 2 cut(s) 94, 556
Bsp19I CCATGG 1 cut(s) 782
BspACI CCGC 2 cut(s) 8, 330
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 3 cut(s) 163, 610, 664
BspLI GGNNCC 2 cut(s) 270, 324
BspMI ACCTGC 1 cut(s) 557
BspPI GGATC 1 cut(s) 551
BspT107I GGYRCC 2 cut(s) 268, 322
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 782
BssMI GATC 2 cut(s) 94, 556
BssT1I CCWWGG 1 cut(s) 782
Bst4CI ACNGT 1 cut(s) 160
BstBAI YACGTR 1 cut(s) 425
BstDEI CTNAG 3 cut(s) 171, 618, 672
BstDSI CCRYGG 1 cut(s) 782
BstENI CCTNNNNNAGG 1 cut(s) 564
BstF5I GGATG 3 cut(s) 4, 55, 793
BstKTI GATC 2 cut(s) 97, 559
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 2 cut(s) 94, 556
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 1 cut(s) 702
BstSFI CTRYAG 2 cut(s) 177, 342
BstSLI GKGCMC 1 cut(s) 631
BstV1I GCAGC 3 cut(s) 660, 752, 859
BsuRI GGCC 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 782
BtsCI GGATG 3 cut(s) 4, 55, 793
BtsIMutI CAGTG 3 cut(s) 84, 399, 757
BveI ACCTGC 1 cut(s) 557
CaiI CAGNNNCTG 1 cut(s) 83
CseI GACGC 2 cut(s) 572, 602
Csp6I GTAC 5 cut(s) 269, 323, 422, 524, 819
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 3 cut(s) 107, 632, 783
CviQI GTAC 5 cut(s) 269, 323, 422, 524, 819
DdeI CTNAG 3 cut(s) 171, 618, 672
DpnI GATC 2 cut(s) 96, 558
DpnII GATC 2 cut(s) 94, 556
DrdI GACNNNNNNGTC 1 cut(s) 569
DseDI GACNNNNNNGTC 1 cut(s) 569
EaeI YGGCCR 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 782
Eco57I CTGAAG 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 782
EcoT22I ATGCAT 2 cut(s) 6, 315
ErhI CCWWGG 1 cut(s) 782
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 3 cut(s) 110, 635, 786
FatI CATG 3 cut(s) 106, 631, 782
Fnu4HI GCNGC 3 cut(s) 649, 741, 848
FokI GGATG 2 cut(s) 62, 800
Fsp4HI GCNGC 3 cut(s) 649, 741, 848
FspBI CTAG 6 cut(s) 188, 284, 356, 645, 737, 756
GluI GCNGC 3 cut(s) 649, 741, 848
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 441
HapII CCGG 2 cut(s) 266, 703
HgaI GACGC 2 cut(s) 572, 602
Hin1II CATG 3 cut(s) 110, 635, 786
HinfI GANTC 9 cut(s) 28, 152, 182, 389, 622, 668, 694, 747, 771
HpaII CCGG 2 cut(s) 266, 703
HphI GGTGA 1 cut(s) 692
Hpy166II GTNNAC 3 cut(s) 104, 524, 629
Hpy188I TCNGA 4 cut(s) 49, 85, 172, 673
Hpy188III TCNNGA 5 cut(s) 116, 472, 560, 604, 617
Hpy8I GTNNAC 3 cut(s) 104, 524, 629
HpyAV CCTTC 4 cut(s) 80, 282, 412, 761
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 5 cut(s) 4, 313, 488, 629, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 3 cut(s) 171, 618, 672
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 3 cut(s) 110, 635, 786
KpnI GGTACC 2 cut(s) 272, 326
Kzo9I GATC 2 cut(s) 94, 556
LmnI GCTCC 2 cut(s) 676, 872
LpnPI CCDG 9 cut(s) 45, 90, 279, 474, 552, 573, 630, 716, 729
Lsp1109I GCAGC 3 cut(s) 660, 752, 859
LweI GCATC 2 cut(s) 13, 19
MaeI CTAG 6 cut(s) 188, 284, 356, 645, 737, 756
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 425
MalI GATC 2 cut(s) 96, 558
MboI GATC 2 cut(s) 94, 556
MboII GAAGA 2 cut(s) 5, 803
MfeI CAATTG 3 cut(s) 132, 234, 657
MhlI GDGCHC 1 cut(s) 631
MlsI TGGCCA 1 cut(s) 441
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 2 cut(s) 37, 631
Mox20I TGGCCA 1 cut(s) 441
Mph1103I ATGCAT 2 cut(s) 6, 315
MroXI GAANNNNTTC 3 cut(s) 693, 775, 798
MscI TGGCCA 1 cut(s) 441
MseI TTAA 3 cut(s) 65, 452, 890
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 2 cut(s) 266, 703
MspR9I CCNGG 1 cut(s) 704
MunI CAATTG 3 cut(s) 132, 234, 657
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 704
NcoI CCATGG 1 cut(s) 782
NdeII GATC 2 cut(s) 94, 556
NlaIII CATG 3 cut(s) 110, 635, 786
NlaIV GGNNCC 2 cut(s) 270, 324
NmuCI GTSAC 1 cut(s) 425
NsiI ATGCAT 2 cut(s) 6, 315
NspI RCATGY 1 cut(s) 635
PaqCI CACCTGC 1 cut(s) 557
PciI ACATGT 1 cut(s) 631
PdmI GAANNNNTTC 3 cut(s) 693, 775, 798
PfeI GAWTC 7 cut(s) 152, 182, 389, 668, 694, 747, 771
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 3 cut(s) 650, 742, 849
PleI GAGTC 2 cut(s) 36, 630
PpsI GAGTC 2 cut(s) 36, 630
Ppu21I YACGTR 1 cut(s) 425
PscI ACATGT 1 cut(s) 631
PshBI ATTAAT 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 270, 324
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 5 cut(s) 270, 324, 423, 525, 820
RsaNI GTAC 5 cut(s) 269, 323, 422, 524, 819
SaqAI TTAA 3 cut(s) 65, 452, 890
SatI GCNGC 3 cut(s) 649, 741, 848
Sau3AI GATC 2 cut(s) 94, 556
SchI GAGTC 2 cut(s) 37, 631
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 1 cut(s) 631
SfaNI GCATC 2 cut(s) 13, 19
SfcI CTRYAG 2 cut(s) 177, 342
SsiI CCGC 2 cut(s) 8, 330
SspI AATATT 3 cut(s) 124, 297, 860
SspMI CTAG 6 cut(s) 188, 284, 356, 645, 737, 756
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 97, 387
TatI WGTACW 1 cut(s) 523
TfiI GAWTC 7 cut(s) 152, 182, 389, 668, 694, 747, 771
Tru1I TTAA 3 cut(s) 65, 452, 890
Tru9I TTAA 3 cut(s) 65, 452, 890
TscAI CASTG 3 cut(s) 84, 399, 757
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 3 cut(s) 648, 740, 847
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 5 cut(s) 66, 474, 686, 804, 870
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 3 cut(s) 84, 399, 757
Van91I CCANNNNNTGG 1 cut(s) 236
VneI GTGCAC 1 cut(s) 627
VspI ATTAAT 1 cut(s) 65
XagI CCTNNNNNAGG 1 cut(s) 564
XapI RAATTY 2 cut(s) 146, 461
XceI RCATGY 1 cut(s) 635
XmnI GAANNNNTTC 3 cut(s) 693, 775, 798
XspI CTAG 6 cut(s) 188, 284, 356, 645, 737, 756
Zsp2I ATGCAT 2 cut(s) 6, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.