Rmu_sc0005941.1_g000006

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005941.1
Physical Location & Seq
Forward (+)
28123 .. 30379
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005941.1_g000006.1.cds

Sequence Viewer

Length: 1665 bp
atgaaaaagatggaaactatctatctagcagctaacttacacaaagatggtgatgctcgtaattttgagaagatttctgcttgtgtacctgaagatagtaatctttcttggaatgtcaatttggttgcagcatgtgtcaagtttggtggtacaagaagtggccgccaaatgtttgataacatcttatgctcaaaggtgagctcatggaatgtcatactctctggttatgtccagaatgaagaacacatggagacgttgatgttcttgtgtgcaatttcagaatttggcaccttggctactctaaatgcatggttgaatggtaactttctgtttttacctcctgagaacagagtggagaaaatgaatttgcttcttgctgataagttggagaaactggacaaaattgtgaaaatgttgcttgttgacaattgggagagatggaagtatttagtaattgctatgaataagaatggtactaaagatttgcatgcgaattttcttgaaaaccatttggagctatttgtgaagtgtttgcgatatgttatgtctacttgggctgcactttacacaatgcagatgttgggattcaaattctattgtcagcatttataccagctttcatcatctttgactaaattagaaggagagttggaggatttggatagggacaaaaatataaattgggaaagaatgactaagttctattgtgtggctgctgttgaggacaagttgaagcaaggaggcatttctgacatgattggtggagaccttgagttattaatgctactgttattctctggtgtcgtgtcctatggagaagcatttacaagtttggagttgctgcaaaatgaatgtcagattgatcaagcagatgtcaaggctattgttgcaagtgcgattattcagttgcatttaaatgaagctactgaattgattttatcaagtggcatgagagtttgctgtaacagtacagactttgatgatgatcaggttatctttacaaggttctcatatgggggtttatccgtacataaagcacacattgacgaatttgctatgaaatctgagaagaagcaatttggtattgttttcggattatatgagcagaagctatttttaaccatattgctgcagcatggaatatttaaggtgggaggagaacttagagatgatggaaacttcattgctcagttgataaattcagagcaccaaacatgccccaaaagtggacagaaaggttttcacatggcccttctacttaactatgcactgaagagtctattgcatcaatggtgtgaggaaaacaagtgcctggtctccctctcacgtgcttttgaaattgcatttggtgggaagaaggtgcatgtctctcaacttgaagggaagaaaactgtccataacaatgttgctgaagttattgcagacattgatggcaaactctatgatatctcagttattatgcagttggtgatggttttgtccactaggcccatggatgaagtgaagggcatcatgtgtatcatgcatgaatctctagcaggtaatccaactgggagatttgatcaattcaaattcaaagcatttgttttgatgatcacttctgggggttggttgattgcaaaaggtgtcaaggatatcatgtggttctcagaattgcagcgttga

Protein Analysis

554

Amino Acids

62.81

Weight (kDa)

5.96

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1529
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 548
AciI CCGC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 7 cut(s) 281, 364, 493, 590, 1049, 1198, 1571
AcuI CTGAAG 3 cut(s) 111, 1292, 1431
AcvI CACGTG 1 cut(s) 1328
AfaI GTAC 5 cut(s) 87, 151, 475, 970, 1029
AfiI CCNNNNNNNGG 1 cut(s) 1226
AgsI TTSAA 8 cut(s) 316, 503, 589, 733, 1337, 1379, 1570, 1576
AjnI CCWGG 1 cut(s) 1311
AjuI GAANNNNNNNTTGG 4 cut(s) 104, 136, 1329, 1361
AluBI AGCT 6 cut(s) 32, 201, 517, 616, 923, 1111
AluI AGCT 6 cut(s) 32, 201, 517, 616, 923, 1111
Alw21I GWGCWC 2 cut(s) 203, 1209
Alw26I GTCTC 4 cut(s) 245, 759, 1321, 1372
AoxI GGCC 3 cut(s) 160, 1248, 1487
ApeKI GCWGC 8 cut(s) 29, 128, 557, 713, 841, 1129, 1132, 1657
ApoI RAATTY 7 cut(s) 281, 364, 493, 590, 1049, 1198, 1571
ArsI GACNNNNNNTTYG 2 cut(s) 838, 870
AseI ATTAAT 1 cut(s) 779
AspS9I GGNCC 2 cut(s) 1249, 1488
AsuHPI GGTGA 3 cut(s) 62, 208, 1480
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 203
BbrPI CACGTG 1 cut(s) 1328
Bbv12I GWGCWC 2 cut(s) 203, 1209
BbvI GCAGC 7 cut(s) 41, 140, 544, 700, 828, 1116, 1144
BccI CCATC 6 cut(s) 4, 41, 432, 1166, 1424, 1465
BciT130I CCWGG 1 cut(s) 1313
BclI TGATCA 4 cut(s) 862, 985, 1561, 1593
BcoDI GTCTC 4 cut(s) 245, 759, 1321, 1372
BfaI CTAG 3 cut(s) 26, 1485, 1535
BfmI CTRYAG 1 cut(s) 1130
BfuAI ACCTGC 1 cut(s) 1529
BisI GCNGC 9 cut(s) 30, 129, 163, 558, 714, 842, 1130, 1133, 1658
BlsI GCNGC 9 cut(s) 31, 130, 164, 559, 715, 843, 1131, 1134, 1659
Bme1390I CCNGG 1 cut(s) 1313
BmgT120I GGNCC 2 cut(s) 1249, 1488
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 1313
BmrI ACTGGG 1 cut(s) 1560
BmsI GCATC 3 cut(s) 43, 1294, 1518
BmuI ACTGGG 1 cut(s) 1560
BpuEI CTTGAG 1 cut(s) 791
BsaAI YACGTR 1 cut(s) 1328
BsaBI GATNNNNATC 2 cut(s) 99, 984
BsaI GGTCTC 2 cut(s) 759, 1321
BsaJI CCNNGG 2 cut(s) 291, 1491
Bsc4I CCNNNNNNNGG 1 cut(s) 1226
Bse1I ACTGG 2 cut(s) 399, 1555
Bse3DI GCAATG 1 cut(s) 1182
Bse8I GATNNNNATC 2 cut(s) 99, 984
BseBI CCWGG 1 cut(s) 1313
BseDI CCNNGG 2 cut(s) 291, 1491
BseGI GGATG 1 cut(s) 1501
BseJI GATNNNNATC 2 cut(s) 99, 984
BseLI CCNNNNNNNGG 1 cut(s) 1226
BseMI GCAATG 1 cut(s) 1182
BseMII CTCAG 5 cut(s) 333, 1056, 1202, 1464, 1662
BseNI ACTGG 2 cut(s) 399, 1555
BseRI GAGGAG 1 cut(s) 1170
BseXI GCAGC 7 cut(s) 41, 140, 544, 700, 828, 1116, 1144
BsgI GTGCAG 1 cut(s) 543
BshFI GGCC 3 cut(s) 162, 1250, 1489
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 2 cut(s) 203, 1209
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 1 cut(s) 1226
BsmAI GTCTC 4 cut(s) 245, 759, 1321, 1372
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 680
BsnI GGCC 3 cut(s) 162, 1250, 1489
Bso31I GGTCTC 2 cut(s) 759, 1321
Bsp1286I GDGCHC 2 cut(s) 203, 1209
Bsp143I GATC 4 cut(s) 862, 985, 1561, 1593
Bsp19I CCATGG 1 cut(s) 1491
BspACI CCGC 1 cut(s) 163
BspANI GGCC 3 cut(s) 162, 1250, 1489
BspCNI CTCAG 5 cut(s) 334, 1057, 1201, 1463, 1661
BspLI GGNNCC 1 cut(s) 289
BspMAI CTGCAG 1 cut(s) 1134
BspMI ACCTGC 1 cut(s) 1529
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 2 cut(s) 759, 1321
BsrDI GCAATG 1 cut(s) 1182
BsrI ACTGG 2 cut(s) 399, 1555
BssECI CCNNGG 2 cut(s) 291, 1491
BssMI GATC 4 cut(s) 862, 985, 1561, 1593
BssT1I CCWWGG 2 cut(s) 291, 1491
Bst2UI CCWGG 1 cut(s) 1313
Bst4CI ACNGT 3 cut(s) 789, 968, 1393
Bst6I CTCTTC 1 cut(s) 1268
BstBAI YACGTR 1 cut(s) 1328
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 7 cut(s) 342, 696, 1065, 1163, 1188, 1450, 1648
BstDSI CCRYGG 1 cut(s) 1491
BstF5I GGATG 1 cut(s) 1501
BstKTI GATC 4 cut(s) 865, 988, 1564, 1596
BstMAI GTCTC 4 cut(s) 245, 759, 1321, 1372
BstMBI GATC 4 cut(s) 862, 985, 1561, 1593
BstMWI GCNNNNNNNGC 1 cut(s) 887
BstNI CCWGG 1 cut(s) 1313
BstNSI RCATGY 4 cut(s) 135, 491, 1218, 1367
BstSCI CCNGG 1 cut(s) 1311
BstSFI CTRYAG 1 cut(s) 1130
BstV1I GCAGC 7 cut(s) 41, 140, 544, 700, 828, 1116, 1144
BsuRI GGCC 3 cut(s) 162, 1250, 1489
BtgI CCRYGG 1 cut(s) 1491
BtsCI GGATG 1 cut(s) 1501
BtsIMutI CAGTG 1 cut(s) 1268
BveI ACCTGC 1 cut(s) 1529
Cac8I GCNNGC 1 cut(s) 489
Cfr13I GGNCC 2 cut(s) 1249, 1488
Csp6I GTAC 5 cut(s) 86, 150, 474, 969, 1028
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviQI GTAC 5 cut(s) 86, 150, 474, 969, 1028
DdeI CTNAG 7 cut(s) 342, 696, 1065, 1163, 1188, 1450, 1648
DpnI GATC 4 cut(s) 864, 987, 1563, 1595
DpnII GATC 4 cut(s) 862, 985, 1561, 1593
DraI TTTAAA 1 cut(s) 915
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 1268
EarI CTCTTC 1 cut(s) 1268
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 291, 1491
Eco24I GRGCYC 1 cut(s) 203
Eco31I GGTCTC 2 cut(s) 759, 1321
Eco32I GATATC 2 cut(s) 1447, 1636
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 3 cut(s) 111, 1292, 1431
Eco72I CACGTG 1 cut(s) 1328
EcoICRI GAGCTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 1311
EcoRV GATATC 2 cut(s) 1447, 1636
EcoT14I CCWWGG 2 cut(s) 291, 1491
EcoT22I ATGCAT 2 cut(s) 310, 1527
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 2 cut(s) 291, 1491
Esp3I CGTCTC 1 cut(s) 245
FaqI GGGAC 1 cut(s) 680
FauNDI CATATG 1 cut(s) 1012
FbaI TGATCA 4 cut(s) 862, 985, 1561, 1593
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 9 cut(s) 30, 129, 163, 558, 714, 842, 1130, 1133, 1658
FokI GGATG 1 cut(s) 1508
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 9 cut(s) 30, 129, 163, 558, 714, 842, 1130, 1133, 1658
FspBI CTAG 3 cut(s) 26, 1485, 1535
GluI GCNGC 9 cut(s) 30, 129, 163, 558, 714, 842, 1130, 1133, 1658
HaeIII GGCC 3 cut(s) 162, 1250, 1489
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 3 cut(s) 585, 1276, 1529
HphI GGTGA 3 cut(s) 62, 208, 1480
Hpy166II GTNNAC 5 cut(s) 86, 424, 549, 1229, 1482
Hpy188I TCNGA 7 cut(s) 280, 751, 858, 1066, 1094, 1204, 1651
Hpy188III TCNNGA 3 cut(s) 232, 341, 500
Hpy8I GTNNAC 5 cut(s) 86, 424, 549, 1229, 1482
HpyAV CCTTC 5 cut(s) 635, 1262, 1351, 1373, 1498
HpyCH4III ACNGT 3 cut(s) 789, 968, 1393
HpyCH4IV ACGT 2 cut(s) 254, 1327
HpyF10VI GCNNNNNNNGC 1 cut(s) 887
HpyF3I CTNAG 7 cut(s) 342, 696, 1065, 1163, 1188, 1450, 1648
HpySE526I ACGT 2 cut(s) 254, 1327
Ksp22I TGATCA 4 cut(s) 862, 985, 1561, 1593
Kzo9I GATC 4 cut(s) 862, 985, 1561, 1593
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 7 cut(s) 41, 140, 544, 700, 828, 1116, 1144
LweI GCATC 3 cut(s) 43, 1294, 1518
MaeI CTAG 3 cut(s) 26, 1485, 1535
MaeII ACGT 2 cut(s) 254, 1327
MaeIII GTNAC 2 cut(s) 320, 962
MalI GATC 4 cut(s) 864, 987, 1563, 1595
MboI GATC 4 cut(s) 862, 985, 1561, 1593
MboII GAAGA 7 cut(s) 82, 104, 251, 1081, 1285, 1366, 1396
MfeI CAATTG 1 cut(s) 427
MhlI GDGCHC 2 cut(s) 203, 1209
MlyI GAGTC 1 cut(s) 1285
MmeI TCCRAC 3 cut(s) 366, 630, 1571
MnlI CCTC 7 cut(s) 348, 646, 715, 734, 1148, 1291, 1331
Mph1103I ATGCAT 2 cut(s) 310, 1527
MseI TTAA 5 cut(s) 779, 914, 1118, 1146, 1260
MslI CAYNNNNRTG 3 cut(s) 45, 915, 1401
MspR9I CCNGG 1 cut(s) 1313
MunI CAATTG 1 cut(s) 427
MvaI CCWGG 1 cut(s) 1313
MwoI GCNNNNNNNGC 1 cut(s) 887
NcoI CCATGG 1 cut(s) 1491
NdeI CATATG 1 cut(s) 1012
NdeII GATC 4 cut(s) 862, 985, 1561, 1593
NlaIV GGNNCC 1 cut(s) 289
NsiI ATGCAT 2 cut(s) 310, 1527
NspI RCATGY 4 cut(s) 135, 491, 1218, 1367
PaeI GCATGC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 585, 1529
PkrI GCNGC 9 cut(s) 31, 130, 164, 559, 715, 843, 1131, 1134, 1659
PleI GAGTC 1 cut(s) 1284
PmaCI CACGTG 1 cut(s) 1328
PmlI CACGTG 1 cut(s) 1328
PpsI GAGTC 1 cut(s) 1284
Ppu21I YACGTR 1 cut(s) 1328
PshBI ATTAAT 1 cut(s) 779
Psp124BI GAGCTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 1311
PspCI CACGTG 1 cut(s) 1328
PspGI CCWGG 1 cut(s) 1311
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 1249, 1488
PstI CTGCAG 1 cut(s) 1134
RsaI GTAC 5 cut(s) 87, 151, 475, 970, 1029
RsaNI GTAC 5 cut(s) 86, 150, 474, 969, 1028
RseI CAYNNNNRTG 3 cut(s) 45, 915, 1401
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 5 cut(s) 779, 914, 1118, 1146, 1260
SatI GCNGC 9 cut(s) 30, 129, 163, 558, 714, 842, 1130, 1133, 1658
Sau3AI GATC 4 cut(s) 862, 985, 1561, 1593
Sau96I GGNCC 2 cut(s) 1249, 1488
SchI GAGTC 1 cut(s) 1285
ScrFI CCNGG 1 cut(s) 1313
SduI GDGCHC 2 cut(s) 203, 1209
SfaNI GCATC 3 cut(s) 43, 1294, 1518
SfcI CTRYAG 1 cut(s) 1130
SmiI ATTTAAAT 1 cut(s) 915
SmiMI CAYNNNNRTG 3 cut(s) 45, 915, 1401
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
SphI GCATGC 1 cut(s) 491
SsiI CCGC 1 cut(s) 163
SspI AATATT 1 cut(s) 1143
SspMI CTAG 3 cut(s) 26, 1485, 1535
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 1311
StyI CCWWGG 2 cut(s) 291, 1491
SwaI ATTTAAAT 1 cut(s) 915
TaaI ACNGT 3 cut(s) 789, 968, 1393
TaiI ACGT 2 cut(s) 257, 1330
TatI WGTACW 1 cut(s) 968
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 2 cut(s) 585, 1529
Tru1I TTAA 5 cut(s) 779, 914, 1118, 1146, 1260
Tru9I TTAA 5 cut(s) 779, 914, 1118, 1146, 1260
TscAI CASTG 1 cut(s) 1275
TseI GCWGC 8 cut(s) 29, 128, 557, 713, 841, 1129, 1132, 1657
TspGWI ACGGA 1 cut(s) 1015
TspRI CASTG 1 cut(s) 1275
VspI ATTAAT 1 cut(s) 779
XapI RAATTY 7 cut(s) 281, 364, 493, 590, 1049, 1198, 1571
XceI RCATGY 4 cut(s) 135, 491, 1218, 1367
XcmI CCANNNNNNNNNTGG 1 cut(s) 1489
XmiI GTMKAC 1 cut(s) 548
XspI CTAG 3 cut(s) 26, 1485, 1535
Zsp2I ATGCAT 2 cut(s) 310, 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.