Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000870.1

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

301566 .. 302903

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000870.1_g000071.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atggagacaaaagcaaagattgttgagaagatttttgttcatatacctgaagttagtatttcttcttggattgtcaatttgattgcagcatgtgtcaagtttggtgatacaaaaggtggctgtcaaatgtttgataacatcttatgctcaaacgcaagttcatggaatgccatactctctggttatttccagaataaagactacatggaggtaaagcatataattcataacatgcaagaattagatgcttgttggaacgccacgatagcaggtctttcagtcaattctccatataaggaagctttcacgtacaggaaattgaggcaacatgagatgcttcccacgcaattcttttatgttcctatattgagctattgtgcacagctagcttctacatttcaagagaaacagattactatttcactggcatcaataaaaatttcattggccaaagtgtttgtaatggaagttaatgagaagaatcatctagatataagtcgagggctcaattgttgcttattcctctgtgattgcataaagaaagttcttacacttgttggcaagggaaaactcaaagaaatggcagcaatattcaactggttcttgtgtgcaatttcaaaatttggcaccttggctactctaaatgcatggttgaatggtaactttctgtttttacctcttgagaacaaagtggagaaaatgaatttgcttcttgctgataagttggagaaactggacaaaattgtgaaaatgttgcttgttgacaattgggagagatggaagtatttagtaattgctgcgaataagaatggtactaaagatttgcacgcgaattttcttggaaaccatttggagctatttgtgaaatgtttgcgatatgttatgtctacttgggatgcactttacacaatggagaagttgggattcaaattctattgtcagcatttatcatctttgactcaattagaaggagatttggaggatttggatagggacaaaaatataaattgggaaagaatgactaagttctctgttaatccacaactttccaattctattaaaggcgctcttgaaatagattgtctcatagctttaaagttggtgatgttactgccttttaaaccactacagttacagtgctttgctcctattgaggacaagttgaagcaaggaggcatttctgacatgattggtggagaccttgagttattaattctactgttattctttggtgtcgtgtcctatggagaagcatttacaagtttgaagttgctgcaaaatgaatgtcagattgatcaagcagatgtcaaggctattgttgcaagtgcgattatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

445

Amino Acids

50.5

Weight (kDa)

7.45

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	626
AccI	GTMKAC	1 cut(s)	887
AccII	CGCG	1 cut(s)	830
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	5 cut(s)	438, 620, 703, 832, 929
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	311, 814
AgsI	TTSAA	8 cut(s)	401, 595, 618, 655, 928, 1073, 1165, 1267
AluBI	AGCT	6 cut(s)	302, 372, 385, 389, 856, 1091
AluI	AGCT	6 cut(s)	302, 372, 385, 389, 856, 1091
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	2 cut(s)	1088, 1191
Alw44I	GTGCAC	1 cut(s)	378
AoxI	GGCC	1 cut(s)	447
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	4 cut(s)	86, 584, 797, 1273
ApoI	RAATTY	5 cut(s)	438, 620, 703, 832, 929
ArsI	GACNNNNNNTTYG	2 cut(s)	1270, 1302
AseI	ATTAAT	1 cut(s)	1211
AspLEI	GCGC	1 cut(s)	1067
AsuHPI	GGTGA	2 cut(s)	116, 1114
AsuNHI	GCTAGC	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	4 cut(s)	98, 596, 784, 1260
BccI	CCATC	1 cut(s)	771
BclI	TGATCA	1 cut(s)	1294
BcoDI	GTCTC	2 cut(s)	1088, 1191
BfaI	CTAG	2 cut(s)	386, 488
BfmI	CTRYAG	1 cut(s)	1127
BfoI	RGCGCY	1 cut(s)	1068
BfuAI	ACCTGC	1 cut(s)	260
BisI	GCNGC	4 cut(s)	87, 585, 798, 1274
BlsI	GCNGC	4 cut(s)	88, 586, 799, 1275
BmiI	GGNNCC	1 cut(s)	628
BmsI	GCATC	4 cut(s)	235, 324, 437, 886
BmtI	GCTAGC	1 cut(s)	389
BpuEI	CTTGAG	2 cut(s)	701, 1223
BsaAI	YACGTR	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	1191
BsaJI	CCNNGG	1 cut(s)	630
Bse1I	ACTGG	3 cut(s)	429, 602, 738
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	901
BseNI	ACTGG	3 cut(s)	429, 602, 738
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	4 cut(s)	98, 596, 784, 1260
Bsh1236I	CGCG	1 cut(s)	830
BshFI	GGCC	1 cut(s)	449
BshNI	GGYRCC	1 cut(s)	626
BsiHKAI	GWGCWC	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	1007
BsmAI	GTCTC	2 cut(s)	1088, 1191
BsmFI	GGGAC	1 cut(s)	1007
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	449
Bso31I	GGTCTC	1 cut(s)	1191
Bsp1286I	GDGCHC	2 cut(s)	382, 507
Bsp143I	GATC	1 cut(s)	1294
BspANI	GGCC	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	830
BspLI	GGNNCC	1 cut(s)	628
BspMI	ACCTGC	1 cut(s)	260
BspOI	GCTAGC	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	1191
BsrI	ACTGG	3 cut(s)	429, 602, 738
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	1 cut(s)	1294
BssT1I	CCWWGG	1 cut(s)	630
Bst4CI	ACNGT	3 cut(s)	1131, 1137, 1221
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	387, 828
BstDEI	CTNAG	1 cut(s)	1023
BstF5I	GGATG	1 cut(s)	901
BstFNI	CGCG	1 cut(s)	830
BstH2I	RGCGCY	1 cut(s)	1068
BstHHI	GCGC	1 cut(s)	1067
BstKTI	GATC	1 cut(s)	1297
BstMAI	GTCTC	2 cut(s)	1088, 1191
BstMBI	GATC	1 cut(s)	1294
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 343, 386, 1319
BstNSI	RCATGY	2 cut(s)	93, 235
BstSFI	CTRYAG	1 cut(s)	1127
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	830
BstV1I	GCAGC	4 cut(s)	98, 596, 784, 1260
BsuRI	GGCC	1 cut(s)	449
BtsCI	GGATG	1 cut(s)	901
BtsIMutI	CAGTG	2 cut(s)	422, 1142
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	387, 828
CfoI	GCGC	1 cut(s)	1067
Csp6I	GTAC	2 cut(s)	310, 813
CviAII	CATG	7 cut(s)	90, 162, 205, 232, 329, 648, 1186
CviQI	GTAC	2 cut(s)	310, 813
DdeI	CTNAG	1 cut(s)	1023
DpnI	GATC	1 cut(s)	1296
DpnII	GATC	1 cut(s)	1294
DraI	TTTAAA	2 cut(s)	1095, 1120
EaeI	YGGCCR	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	1191
Eco57I	CTGAAG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	630
EcoT22I	ATGCAT	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	7 cut(s)	93, 165, 208, 235, 332, 651, 1189
FalI	AAGNNNNNCTT	2 cut(s)	1053, 1085
FaqI	GGGAC	1 cut(s)	1007
FatI	CATG	7 cut(s)	89, 161, 204, 231, 328, 647, 1185
FbaI	TGATCA	1 cut(s)	1294
FblI	GTMKAC	1 cut(s)	887
Fnu4HI	GCNGC	4 cut(s)	87, 585, 798, 1274
FokI	GGATG	1 cut(s)	908
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	4 cut(s)	87, 585, 798, 1274
FspBI	CTAG	2 cut(s)	386, 488
GlaI	GCGC	1 cut(s)	1066
GluI	GCNGC	4 cut(s)	87, 585, 798, 1274
HaeII	RGCGCY	1 cut(s)	1068
HaeIII	GGCC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	1067
Hin1II	CATG	7 cut(s)	93, 165, 208, 235, 332, 651, 1189
Hin6I	GCGC	1 cut(s)	1065
HinP1I	GCGC	1 cut(s)	1065
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	3 cut(s)	481, 924, 958
HphI	GGTGA	2 cut(s)	116, 1114
Hpy166II	GTNNAC	3 cut(s)	380, 763, 888
Hpy188I	TCNGA	2 cut(s)	1183, 1290
Hpy188III	TCNNGA	5 cut(s)	190, 401, 488, 680, 1070
Hpy8I	GTNNAC	3 cut(s)	380, 763, 888
HpyAV	CCTTC	1 cut(s)	962
HpyCH4III	ACNGT	3 cut(s)	1131, 1137, 1221
HpyCH4IV	ACGT	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 343, 386, 1319
HpyF3I	CTNAG	1 cut(s)	1023
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	7 cut(s)	93, 165, 208, 235, 332, 651, 1189
HspAI	GCGC	1 cut(s)	1065
Ksp22I	TGATCA	1 cut(s)	1294
Kzo9I	GATC	1 cut(s)	1294
LmnI	GCTCC	2 cut(s)	853, 1150
LpnPI	CCDG	8 cut(s)	60, 165, 203, 255, 298, 410, 583, 719
Lsp1109I	GCAGC	4 cut(s)	98, 596, 784, 1260
LweI	GCATC	4 cut(s)	235, 324, 437, 886
MaeI	CTAG	2 cut(s)	386, 488
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	3 cut(s)	659, 1107, 1131
MalI	GATC	1 cut(s)	1296
MboI	GATC	1 cut(s)	1294
MboII	GAAGA	3 cut(s)	40, 54, 490
MfeI	CAATTG	2 cut(s)	508, 766
MhlI	GDGCHC	2 cut(s)	382, 507
MlsI	TGGCCA	1 cut(s)	449
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	952
MmeI	TCCRAC	2 cut(s)	233, 705
MnlI	CCTC	8 cut(s)	202, 315, 494, 533, 687, 973, 1147, 1166
Mox20I	TGGCCA	1 cut(s)	449
Mph1103I	ATGCAT	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	6 cut(s)	471, 1035, 1059, 1094, 1119, 1211
Msp20I	TGGCCA	1 cut(s)	449
MunI	CAATTG	2 cut(s)	508, 766
Mva1269I	GAATGC	1 cut(s)	172
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	4 cut(s)	266, 343, 386, 1319
NdeII	GATC	1 cut(s)	1294
NheI	GCTAGC	1 cut(s)	385
NlaIII	CATG	7 cut(s)	93, 165, 208, 235, 332, 651, 1189
NlaIV	GGNNCC	1 cut(s)	628
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	2 cut(s)	93, 235
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	481, 924
PkrI	GCNGC	4 cut(s)	88, 586, 799, 1275
PleI	GAGTC	1 cut(s)	952
PpsI	GAGTC	1 cut(s)	952
Ppu21I	YACGTR	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	1211
PspN4I	GGNNCC	1 cut(s)	628
RsaI	GTAC	2 cut(s)	311, 814
RsaNI	GTAC	2 cut(s)	310, 813
SaqAI	TTAA	6 cut(s)	471, 1035, 1059, 1094, 1119, 1211
SatI	GCNGC	4 cut(s)	87, 585, 798, 1274
Sau3AI	GATC	1 cut(s)	1294
SchI	GAGTC	1 cut(s)	952
SduI	GDGCHC	2 cut(s)	382, 507
SfaNI	GCATC	4 cut(s)	235, 324, 437, 886
SfcI	CTRYAG	1 cut(s)	1127
SmlI	CTYRAG	2 cut(s)	680, 1202
SmoI	CTYRAG	2 cut(s)	680, 1202
SspI	AATATT	1 cut(s)	591
SspMI	CTAG	2 cut(s)	386, 488
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	3 cut(s)	1131, 1137, 1221
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	499
TfiI	GAWTC	2 cut(s)	481, 924
Tru1I	TTAA	6 cut(s)	471, 1035, 1059, 1094, 1119, 1211
Tru9I	TTAA	6 cut(s)	471, 1035, 1059, 1094, 1119, 1211
TscAI	CASTG	2 cut(s)	429, 1142
TseI	GCWGC	4 cut(s)	86, 584, 797, 1273
TspDTI	ATGAA	6 cut(s)	29, 150, 215, 432, 716, 1296
TspRI	CASTG	2 cut(s)	429, 1142
VneI	GTGCAC	1 cut(s)	378
VspI	ATTAAT	1 cut(s)	1211
XapI	RAATTY	5 cut(s)	438, 620, 703, 832, 929
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	2 cut(s)	93, 235
XmiI	GTMKAC	1 cut(s)	887
XspI	CTAG	2 cut(s)	386, 488
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.