RchiOBHm_Chr4g0444671

ESKIMO 1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
65320627 .. 65323171
2545 bp
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UTR
Exon/CDS
Intron
PRQ41230

Sequence Viewer

Length: 1632 bp
ATGGGCCCGGAGATCAACTCGTTTCGCTCACCGGGTGCTTCTCCGATTATGACGACAGGCTCCGTTCAAGTGCAAGCTAATGGCTGTTTGAGCACGATGGGTGAATATGAAATTAAAGGCATTGAGGTTCCAATAGGTGTGAGCTTGGAGAATGGATTTGATCAACTTAGCCGTGATGTTGAATTACAATCCAAAGAGGAAAAAGAACTTGAAATTGAAGATAGTGAAGATGATGATGAAATTAAGGACGATGAAAGGGAAAATGACAGCATGATATTTGGGAACTATGTAGCTGCTAAACAATTCTTGGAAGAGTTGGAACGAAAATCGGGTATTGGTTCTTACTCAGGTGCAGTGAGTTATGGTGACCGTTATCTGAGCTATGGTGATGATTCTCAAAAAGTTGATAGGCAAATTGTGTCAGGCTCAGATAAAGAAGTGAATACTAATGAACAAGGGGGTGCCAAAGGGTTATTTGATTCTGTTGCATTGGCAGCTCTTCTGAAAATAGCAACAATTGCCGTTGTATTAGATGGTAACAAATTGGAGAATCAAGTACCACCACTTGTCCTTTATGTTATTCCTCAAATGCATGCTAATTTTGTTAACCCCAATTTTCAGCCGATTACATCAGTGCAAATCAACTATGCCTTACCTAAGTGTTGTAGGTATGGAAAGGATATTGGTAAATGTTCTGTGGTGAATGTTCTTAATGCATTGTGTGTAAGGCTTAAGCATTACATTGAGGGTTCAAAGAATATTAGCAACCACGTATTGCAACTATGCTTCTCTGGATTTGATAAGAAGGTTCGTGATAAAGGTAGTACTCTCTTAACAGATGAACCTTTTATGGAGTACTTTGCAGGGACAATGTCATCTGGTAATAGCTTGAAATTTACCTTTTCACAAATAATGACTTTGATTGAATTATGGAGTTATGGATATGTTGAGAAAAATAAATTATGGTTTACCAAAATTTCAGTGATTAGTTTTGGAAATGGATGCTTAGATTTCCACCATGATCATGGGCTTATCTCTAGTGGCATTGAATTTAATAGTTTCTTGGTGAGTAAAAATGATGGTTGCATAGTTGTTCTTTACCAGAACATGAATGAAGAAGATGATATGGAAGAGATTGAATTGCCTCCTGAAGTTTGTGACTTGTTTAATGGGGATTGGATTTTCGAACCTGTGACTCATCCTTTGTATAAAGAAGACGAATGTGAGTTCTTGACAGCCCAAGTGACTTGTATGATGAATGGAAGAAGAAACTCTATGTATCAACATTGGAGATGGCAGCCCAGAGATTGTAATCTTCCAAAGTTCAATGCAAGATTGTTGCTAGAGAAACTTAGAAACAAGAGGCTCGTGTTTGTGGGGGACTCATTGAATAGAAACCAACGGGAATCAATAATATGTTTTGCTCAGTCTGTAATTTCTCCTGGGAGAAAGAGCTTGGTGACGAATGGATCTCTCTCTGTTTTCAGAATTGAGAATTATAATACTACAGTAAAGTTTAAGTGGGAGATAAAAGGGTCTGGGAATTTGCTTATGTTGGCTCATCCTCGACATGTGAAGCTTCTTATGAATGATATTGAAGTGGTGCACAAAGGAATTAAGCCATTTTTTTGA

Protein Analysis

543

Amino Acids

61.27

Weight (kDa)

5.24

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 385 - 438 7e-21 PMR5 N terminal Domain
PC-Esterase PF13839 439 - 509 1.2e-18 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1500
AccB1I GGYRCC 1 cut(s) 461
AclWI GGATC 1 cut(s) 1477
AcsI RAATTY 4 cut(s) 893, 975, 1049, 1543
AcuI CTGAAG 1 cut(s) 1170
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 3 cut(s) 558, 826, 857
AflII CTTAAG 1 cut(s) 731
AflIII ACRYGT 1 cut(s) 1570
AjnI CCWGG 1 cut(s) 1441
AluBI AGCT 8 cut(s) 77, 144, 293, 381, 497, 888, 1455, 1579
AluI AGCT 8 cut(s) 77, 144, 293, 381, 497, 888, 1455, 1579
Alw21I GWGCWC 2 cut(s) 95, 1608
Alw44I GTGCAC 1 cut(s) 1604
AlwI GGATC 1 cut(s) 1477
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 1604
ApeKI GCWGC 3 cut(s) 293, 494, 1297
ApoI RAATTY 4 cut(s) 893, 975, 1049, 1543
ArsI GACNNNNNNTTYG 2 cut(s) 1186, 1218
AspS9I GGNCC 2 cut(s) 4, 5
AsuC2I CCSGG 2 cut(s) 8, 33
AsuHPI GGTGA 7 cut(s) 21, 113, 377, 398, 712, 1078, 1471
AsuII TTCGAA 1 cut(s) 1185
BaeGI GKGCMC 2 cut(s) 8, 1608
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 1367
BbsI GAAGAC 1 cut(s) 1221
Bbv12I GWGCWC 2 cut(s) 95, 1608
BbvI GCAGC 3 cut(s) 280, 506, 1309
BccI CCATC 4 cut(s) 91, 527, 1073, 1287
BceAI ACGGC 2 cut(s) 156, 506
BciT130I CCWGG 1 cut(s) 1443
BclI TGATCA 2 cut(s) 160, 1021
BcnI CCSGG 2 cut(s) 8, 33
BfaI CTAG 2 cut(s) 1038, 1343
BfmI CTRYAG 1 cut(s) 1506
BfrI CTTAAG 1 cut(s) 731
BisI GCNGC 3 cut(s) 294, 495, 1298
BlsI GCNGC 3 cut(s) 295, 496, 1299
BmcAI AGTACT 2 cut(s) 826, 857
Bme1390I CCNGG 3 cut(s) 8, 33, 1443
BmgT120I GGNCC 2 cut(s) 4, 5
BmiI GGNNCC 4 cut(s) 6, 61, 129, 463
BmrFI CCNGG 3 cut(s) 8, 33, 1443
BmsI GCATC 1 cut(s) 992
BpiI GAAGAC 1 cut(s) 1221
BplI GAGNNNNNCTC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 1185
BpuMI CCSGG 2 cut(s) 8, 33
BsaAI YACGTR 1 cut(s) 772
BsaBI GATNNNNATC 1 cut(s) 1311
BsaJI CCNNGG 1 cut(s) 1442
Bse8I GATNNNNATC 1 cut(s) 1311
BseBI CCWGG 1 cut(s) 1443
BseDI CCNNGG 1 cut(s) 1442
BseGI GGATG 3 cut(s) 1007, 1198, 1561
BseJI GATNNNNATC 1 cut(s) 1311
BseMII CTCAG 4 cut(s) 360, 368, 441, 1439
BseSI GKGCMC 2 cut(s) 8, 1608
BseXI GCAGC 3 cut(s) 280, 506, 1309
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 461
BsiHKAI GWGCWC 2 cut(s) 95, 1608
BsiSI CCGG 2 cut(s) 8, 32
BslFI GGGAC 2 cut(s) 880, 1394
BsmFI GGGAC 2 cut(s) 880, 1394
BsnI GGCC 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 1185
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 8, 95, 1608
Bsp143I GATC 4 cut(s) 12, 160, 1021, 1469
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 4 cut(s) 359, 369, 440, 1438
BspLI GGNNCC 4 cut(s) 6, 61, 129, 463
BspPI GGATC 1 cut(s) 1477
BspQI GCTCTTC 1 cut(s) 504
BspT104I TTCGAA 1 cut(s) 1185
BspT107I GGYRCC 1 cut(s) 461
BspTI CTTAAG 1 cut(s) 731
BssECI CCNNGG 1 cut(s) 1442
BssMI GATC 4 cut(s) 12, 160, 1021, 1469
BssSI CACGAG 1 cut(s) 1367
Bst2BI CACGAG 1 cut(s) 1367
Bst2UI CCWGG 1 cut(s) 1443
Bst4CI ACNGT 2 cut(s) 371, 1510
Bst6I CTCTTC 3 cut(s) 306, 504, 1125
BstAFI CTTAAG 1 cut(s) 731
BstAPI GCANNNNNTGC 1 cut(s) 518
BstBAI YACGTR 1 cut(s) 772
BstBI TTCGAA 1 cut(s) 1185
BstC8I GCNNGC 2 cut(s) 75, 594
BstDEI CTNAG 8 cut(s) 167, 346, 377, 427, 657, 1006, 1352, 1425
BstEII GGTNACC 1 cut(s) 365
BstF5I GGATG 3 cut(s) 1007, 1198, 1561
BstKTI GATC 4 cut(s) 15, 163, 1024, 1472
BstMBI GATC 4 cut(s) 12, 160, 1021, 1469
BstMWI GCNNNNNNNGC 3 cut(s) 90, 494, 518
BstNI CCWGG 1 cut(s) 1443
BstNSI RCATGY 2 cut(s) 596, 1574
BstPI GGTNACC 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 6, 31, 1441
BstSFI CTRYAG 1 cut(s) 1506
BstSLI GKGCMC 2 cut(s) 8, 1608
BstV1I GCAGC 3 cut(s) 280, 506, 1309
BstV2I GAAGAC 1 cut(s) 1221
BstX2I RGATCY 1 cut(s) 1469
BstXI CCANNNNNNTGG 1 cut(s) 1025
BstYI RGATCY 1 cut(s) 1469
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 3 cut(s) 1007, 1198, 1561
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 3 cut(s) 360, 639, 987
Cac8I GCNNGC 2 cut(s) 75, 594
Cfr13I GGNCC 2 cut(s) 4, 5
Csp6I GTAC 3 cut(s) 557, 825, 856
CviAII CATG 6 cut(s) 271, 593, 1019, 1025, 1108, 1571
CviQI GTAC 3 cut(s) 557, 825, 856
DdeI CTNAG 8 cut(s) 167, 346, 377, 427, 657, 1006, 1352, 1425
DpnI GATC 4 cut(s) 14, 162, 1023, 1471
DpnII GATC 4 cut(s) 12, 160, 1021, 1469
DraIII CACNNNGTG 1 cut(s) 35
Eam1104I CTCTTC 3 cut(s) 306, 504, 1125
EarI CTCTTC 3 cut(s) 306, 504, 1125
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 1170
Eco91I GGTNACC 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 1441
EcoT22I ATGCAT 2 cut(s) 594, 718
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 6 cut(s) 274, 596, 1022, 1028, 1111, 1574
FaqI GGGAC 2 cut(s) 880, 1394
FatI CATG 6 cut(s) 270, 592, 1018, 1024, 1107, 1570
FbaI TGATCA 2 cut(s) 160, 1021
Fnu4HI GCNGC 3 cut(s) 294, 495, 1298
FokI GGATG 3 cut(s) 1014, 1185, 1548
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 294, 495, 1298
FspBI CTAG 2 cut(s) 1038, 1343
GluI GCNGC 3 cut(s) 294, 495, 1298
HaeIII GGCC 1 cut(s) 6
HapII CCGG 2 cut(s) 8, 32
Hin1II CATG 6 cut(s) 274, 596, 1022, 1028, 1111, 1574
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 1577
HinfI GANTC 6 cut(s) 392, 479, 550, 1195, 1382, 1406
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 2 cut(s) 8, 32
HphI GGTGA 7 cut(s) 21, 113, 377, 398, 712, 1078, 1471
Hpy166II GTNNAC 3 cut(s) 607, 969, 1606
Hpy188I TCNGA 5 cut(s) 45, 378, 430, 504, 1487
Hpy188III TCNNGA 4 cut(s) 792, 812, 1148, 1231
Hpy8I GTNNAC 3 cut(s) 607, 969, 1606
HpyAV CCTTC 1 cut(s) 799
HpyCH4III ACNGT 2 cut(s) 371, 1510
HpyCH4IV ACGT 1 cut(s) 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 494, 518
HpyF3I CTNAG 8 cut(s) 167, 346, 377, 427, 657, 1006, 1352, 1425
HpySE526I ACGT 1 cut(s) 771
Hsp92II CATG 6 cut(s) 274, 596, 1022, 1028, 1111, 1574
Ksp22I TGATCA 2 cut(s) 160, 1021
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 4 cut(s) 12, 160, 1021, 1469
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 3 cut(s) 280, 506, 1309
LweI GCATC 1 cut(s) 992
MaeI CTAG 2 cut(s) 1038, 1343
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 6 cut(s) 365, 536, 1157, 1192, 1243, 1459
MalI GATC 4 cut(s) 14, 162, 1023, 1471
MboI GATC 4 cut(s) 12, 160, 1021, 1469
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 1 cut(s) 1469
MhlI GDGCHC 3 cut(s) 8, 95, 1608
MlyI GAGTC 2 cut(s) 1189, 1376
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 7 cut(s) 118, 190, 594, 739, 1155, 1356, 1575
Mph1103I ATGCAT 2 cut(s) 594, 718
MslI CAYNNNNRTG 1 cut(s) 1023
MspCI CTTAAG 1 cut(s) 731
MspI CCGG 2 cut(s) 8, 32
MspR9I CCNGG 3 cut(s) 8, 33, 1443
MunI CAATTG 1 cut(s) 516
MvaI CCWGG 1 cut(s) 1443
MwoI GCNNNNNNNGC 3 cut(s) 90, 494, 518
NciI CCSGG 2 cut(s) 8, 33
NdeII GATC 4 cut(s) 12, 160, 1021, 1469
NlaIII CATG 6 cut(s) 274, 596, 1022, 1028, 1111, 1574
NlaIV GGNNCC 4 cut(s) 6, 61, 129, 463
NmuCI GTSAC 5 cut(s) 365, 1157, 1192, 1243, 1459
NsiI ATGCAT 2 cut(s) 594, 718
NspI RCATGY 2 cut(s) 596, 1574
NspV TTCGAA 1 cut(s) 1185
PaeI GCATGC 1 cut(s) 596
PciI ACATGT 1 cut(s) 1570
PciSI GCTCTTC 1 cut(s) 504
PfeI GAWTC 4 cut(s) 392, 479, 550, 1406
PflFI GACNNNGTC 1 cut(s) 871
PkrI GCNGC 3 cut(s) 295, 496, 1299
PleI GAGTC 2 cut(s) 1189, 1376
PpsI GAGTC 2 cut(s) 1189, 1376
Ppu21I YACGTR 1 cut(s) 772
PscI ACATGT 1 cut(s) 1570
PsiI TTATAA 1 cut(s) 1500
Psp6I CCWGG 1 cut(s) 1441
PspEI GGTNACC 1 cut(s) 365
PspGI CCWGG 1 cut(s) 1441
PspN4I GGNNCC 4 cut(s) 6, 61, 129, 463
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 4, 5
PsuI RGATCY 1 cut(s) 1469
PsyI GACNNNGTC 1 cut(s) 871
RsaI GTAC 3 cut(s) 558, 826, 857
RsaNI GTAC 3 cut(s) 557, 825, 856
RseI CAYNNNNRTG 1 cut(s) 1023
SapI GCTCTTC 1 cut(s) 504
SatI GCNGC 3 cut(s) 294, 495, 1298
Sau3AI GATC 4 cut(s) 12, 160, 1021, 1469
Sau96I GGNCC 2 cut(s) 4, 5
ScaI AGTACT 2 cut(s) 826, 857
SchI GAGTC 2 cut(s) 1189, 1376
ScrFI CCNGG 3 cut(s) 8, 33, 1443
SduI GDGCHC 3 cut(s) 8, 95, 1608
SfaNI GCATC 1 cut(s) 992
SfcI CTRYAG 1 cut(s) 1506
SfuI TTCGAA 1 cut(s) 1185
SmiMI CAYNNNNRTG 1 cut(s) 1023
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
SphI GCATGC 1 cut(s) 596
SspI AATATT 1 cut(s) 760
SspMI CTAG 2 cut(s) 1038, 1343
StyD4I CCNGG 3 cut(s) 6, 31, 1441
TaaI ACNGT 2 cut(s) 371, 1510
TaiI ACGT 1 cut(s) 774
TaqI TCGA 2 cut(s) 1185, 1567
TatI WGTACW 2 cut(s) 824, 855
TfiI GAWTC 4 cut(s) 392, 479, 550, 1406
TscAI CASTG 3 cut(s) 360, 639, 987
TseFI GTSAC 5 cut(s) 365, 1157, 1192, 1243, 1459
TseI GCWGC 3 cut(s) 293, 494, 1297
Tsp45I GTSAC 5 cut(s) 365, 1157, 1192, 1243, 1459
TspDTI ATGAA 9 cut(s) 123, 252, 267, 465, 855, 1124, 1128, 1271, 1601
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 3 cut(s) 360, 639, 987
Tth111I GACNNNGTC 1 cut(s) 871
Vha464I CTTAAG 1 cut(s) 731
VneI GTGCAC 1 cut(s) 1604
XapI RAATTY 4 cut(s) 893, 975, 1049, 1543
XceI RCATGY 2 cut(s) 596, 1574
XcmI CCANNNNNNNNNTGG 1 cut(s) 1022
XspI CTAG 2 cut(s) 1038, 1343
ZrmI AGTACT 2 cut(s) 826, 857
Zsp2I ATGCAT 2 cut(s) 594, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.