Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005823.1

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

39684 .. 45213

Gene Structure 5530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005823.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3168 bp

atgtcatttctgggcttggatcctggggatcctaacaactggtatcagagcccgcaactgggccgatttccggtgagtctggcggtgggatctccggtgggtgttacagcactcattcttatcaccctcacggtagccctcgctacccaccacctccttctcaatatccatcgcaacctacccaccaccaccaccaccaccttcccaaacaatcatcaatggttgagcaccgctgcacattctccatacaattacccattttctcaaaaccaacgttactcaagcactgagctcttcaccaccacaccccaatcacctctaattccaattcatcctcatccaagtgaaatctatcaccattacccacctacccagcctcatttcattcccacaaagcagtctattccttcaccgctgttagttcctactgcagaacacttggaacatcctcaattttcaattccagccgcggctaatgaagaaccttcttcaatttctcttgaacttgagatgggtcacacggtagaaaccaacatttctactaagcgagtaggtttggggggtgaagaagaggtggagtctcaaattcatagtgtgaatccagaaccgtcttggttgatgaagcagaccgaaaaacagaaattcacgttacatgatggcaatggaaacgccggcatttgctacaacagtagcttgggctcccaagagaacaacagtgatgtaagtctagtgcctcctatagttcctgaagctctgaaaggtcaagagaccttagattcaattcattccttgtgtttaaaaactcagagaaagaaacttatttgtgaaaatgctactgaggactttgttaaccttgctgtcaatgttaatgttgatgtcaatattgaatctgtgagtgaaggaccagaatttgtcactgctaacttgaaacaagagttgggtatagtgcctacgcagggaacctccattcaccaagctaaaccatggtctgcccatgacgttgaagtgaatgatgagaggttagaataccatgctctccacctgtttgataaaatgcctaggccagatgtgtactcatggaatgctatattgggttgttattgtaaagctgaagggttaatggatgctggagaattatttctaaaaatgcctgagaggaacattgtctcgtggaaaactctgattagtgctttgctccgaaatggtcaggaggaaaaggggttgggtgtttatgatgccatgatttcggatggaatggtgcctacacattttacattagcaattgtgcccagtgcgtgtggagggtggctggatgtggagaagggttggaaatgtcatagccttgtggagcaaattggccttgaggtaaatgtgtatgtgaggaatactttactctgcatgtatgctaagtgtggagtcattaaggatgcaatgcaggttttcggtgaaatggctaagccgaatgagattacttttacggctatgatgggtgagttaaagaagacgggcaaagtcgtggaggctttggaaatgtttaagctgatgtggaggaaaggggtgagtattgattcggtgcgtattgattctgttttgttgtttgttgacattgaaagggaccccttgtttattgctctttcacttctgaagacaattgttaaacgcaagctagttctggagaaatatgatctcgttactagagctgcagaattgacgataacaagtcacgtagaatcaactcgtcacaagtattctttgtcaagtatattgggtgtttgtgccaaaggatgtggcgaattttctgtcaacgagcgtagtgacgggagaacttttgactcttatcagtttacctacattagtgttcaagtgcatgttgaggatcaaattattgagatgtcaaacacacaatctgggtatgaaattttgagtcaaccaattatggtggaagtctatgcagcatcagagattcacctccacggtatattccttgtacctggtgcatcttatgtacttactttagagggagccccaacaattggtgtaaatgttgaatttacgagtttggagttgctgcaaaatgagtatcaaattgatcaagtagatgtcaaggctgttattgcaattgtaattactcaattgcattcaaatgaagctgctgggatatataaggagttgaatatgatagcagggagtgcatatgagtttgtgaaaatgtggaaaagaggaattgattccagtttattcaattcttcagatcatataaatcgtttgacctcttcacctcataggcaacatactatgaaattctttatagagtacttcattccagtttataatgcacttgttaaatcagaccaattaccttgtcttcaggctttggaggttatattggtggaatgctcaacaacacttgacccatggatgtttgtcgctgtctcaaaagtttcagtgtttacaacttatgatgtcatggaagtacatgcaagtcacattttctgcatgagaaatattaatgctccagatcagtttatcgaagcacttagatcaacaacaaatggtaaagatatgatggagtggtatatggggttgtccacaaatattggattccatgatttttcactaaattcccagagtgcaacacctcaaattgagttgctgtttgcaaagttgaaattcatagaagtagtgtacatggaaatggttgggaagattttgaaccaaggagcggatcataaggacgtggttgcttcaggagctaccactcaaggccacatgttacatgacaaggtccttgatttctctacttattcagatgataatcttgacgtcttatcccatgatcttggtgacaattgccttgttgctcttcatctcatactctgtttattaactaatggtgacaaagcttatgtgctcaaggccacacagatgaccaaccttgaagagaaagttgacctgtctccgtactttcttcattggggtatctcgttgatcatcctctactttgagtttgtctctactatctccatttatggttgcttcttgtataacaagttgggggctgcttttgacaatacgatggatttccagctggtcagcattgttgcttatgctcttggacattcactcaatacttacgcagagtttacacggcatgaggacaagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

1055

Amino Acids

117.79

Weight (kDa)

5.31

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2331
AatII	GACGTC	1 cut(s)	2826
Acc36I	ACCTGC	1 cut(s)	1426
AccB1I	GGYRCC	1 cut(s)	1258
AccB7I	CCANNNNNTGG	1 cut(s)	2033
AccBSI	CCGCTC	1 cut(s)	2723
AccII	CGCG	1 cut(s)	470
AciI	CCGC	7 cut(s)	53, 83, 231, 413, 468, 470, 2723
AclI	AACGTT	1 cut(s)	274
AclWI	GGATC	7 cut(s)	14, 23, 27, 36, 97, 1884, 2733
AcsI	RAATTY	9 cut(s)	585, 641, 908, 1793, 1917, 2048, 2300, 2620, 2669
AcuI	CTGAAG	6 cut(s)	768, 1131, 1664, 2232, 2351, 2730
AcyI	GRCGYC	1 cut(s)	2823
AfaI	GTAC	7 cut(s)	1073, 1989, 2007, 2315, 2475, 2687, 2963
AfiI	CCNNNNNNNGG	6 cut(s)	58, 59, 70, 956, 2033, 2722
AflIII	ACRYGT	1 cut(s)	2769
AjiI	CACGTC	1 cut(s)	2737
AjnI	CCWGG	2 cut(s)	22, 1990
AjuI	GAANNNNNNNTTGG	4 cut(s)	920, 952, 1073, 1105
Alw21I	GWGCWC	3 cut(s)	230, 294, 2913
Alw26I	GTCTC	6 cut(s)	585, 761, 1171, 2437, 2961, 3016
AlwI	GGATC	7 cut(s)	14, 23, 27, 36, 97, 1884, 2733
AoxI	GGCC	5 cut(s)	61, 1061, 1357, 2764, 2916
ApeKI	GCWGC	6 cut(s)	233, 1700, 1952, 2068, 2150, 3059
ApoI	RAATTY	9 cut(s)	585, 641, 908, 1793, 1917, 2048, 2300, 2620, 2669
ArsI	GACNNNNNNTTYG	2 cut(s)	1785, 1817
AseI	ATTAAT	1 cut(s)	2508
Asp700I	GAANNNNTTC	2 cut(s)	1137, 2227
AspA2I	CCTAGG	1 cut(s)	1058
AspS9I	GGNCC	4 cut(s)	61, 902, 1615, 2785
AvaII	GGWCC	3 cut(s)	902, 1615, 2785
AvrII	CCTAGG	1 cut(s)	1058
BaeGI	GKGCMC	1 cut(s)	1290
BamHI	GGATCC	2 cut(s)	19, 28
BanI	GGYRCC	1 cut(s)	1258
BanII	GRGCYC	4 cut(s)	53, 294, 701, 2026
BauI	CACGAG	1 cut(s)	1168
BbsI	GAAGAC	3 cut(s)	1508, 1652, 2357
Bbv12I	GWGCWC	3 cut(s)	230, 294, 2913
BbvI	GCAGC	6 cut(s)	220, 1687, 1964, 2055, 2137, 3046
BccI	CCATC	7 cut(s)	177, 505, 650, 1244, 1480, 2560, 3070
BceAI	ACGGC	2 cut(s)	1494, 3164
BciT130I	CCWGG	2 cut(s)	24, 1992
BclI	TGATCA	2 cut(s)	2089, 2988
BcoDI	GTCTC	6 cut(s)	585, 761, 1171, 2437, 2961, 3016
BfaI	CTAG	4 cut(s)	728, 1059, 1667, 1695
BfmI	CTRYAG	3 cut(s)	429, 738, 1701
BfuAI	ACCTGC	1 cut(s)	1426
BisI	GCNGC	8 cut(s)	234, 468, 471, 1701, 1953, 2069, 2151, 3060
BlnI	CCTAGG	1 cut(s)	1058
BlpI	GCTNAGC	1 cut(s)	1455
BlsI	GCNGC	8 cut(s)	235, 469, 472, 1702, 1954, 2070, 2152, 3061
BmcAI	AGTACT	1 cut(s)	2315
Bme1390I	CCNGG	2 cut(s)	24, 1992
Bme18I	GGWCC	3 cut(s)	902, 1615, 2785
BmgBI	CACGTC	1 cut(s)	2737
BmgT120I	GGNCC	4 cut(s)	61, 902, 1615, 2785
BmiI	GGNNCC	8 cut(s)	21, 30, 700, 961, 1260, 1616, 1617, 2023
BmrFI	CCNGG	2 cut(s)	24, 1992
BmrI	ACTGGG	2 cut(s)	68, 1284
BmsI	GCATC	5 cut(s)	1114, 1225, 1417, 1964, 2006
BmuI	ACTGGG	2 cut(s)	68, 1284
BpiI	GAAGAC	3 cut(s)	1508, 1652, 2357
BplI	GAGNNNNNCTC	2 cut(s)	2996, 3028
BpmI	CTGGAG	3 cut(s)	1149, 1694, 2499
Bpu1102I	GCTNAGC	1 cut(s)	1455
BpuEI	CTTGAG	5 cut(s)	265, 527, 1382, 2745, 2897
BsaAI	YACGTR	1 cut(s)	1726
BsaBI	GATNNNNATC	1 cut(s)	2814
BsaHI	GRCGYC	1 cut(s)	2823
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	7 cut(s)	23, 468, 983, 1058, 1972, 2414, 2716
BsaWI	WCCGGW	2 cut(s)	70, 94
Bsc4I	CCNNNNNNNGG	6 cut(s)	58, 59, 70, 956, 2033, 2722
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	5 cut(s)	44, 63, 1290, 2232, 2324
Bse3DI	GCAATG	2 cut(s)	667, 1437
Bse8I	GATNNNNATC	1 cut(s)	2814
BseBI	CCWGG	2 cut(s)	24, 1992
BseDI	CCNNGG	7 cut(s)	23, 468, 983, 1058, 1972, 2414, 2716
BseJI	GATNNNNATC	1 cut(s)	2814
BseLI	CCNNNNNNNGG	6 cut(s)	58, 59, 70, 956, 2033, 2722
BseMI	GCAATG	2 cut(s)	667, 1437
BseMII	CTCAG	4 cut(s)	279, 818, 828, 1143
BseNI	ACTGG	5 cut(s)	44, 63, 1290, 2232, 2324
BseSI	GKGCMC	1 cut(s)	1290
BseXI	GCAGC	6 cut(s)	220, 1687, 1964, 2055, 2137, 3046
BseYI	CCCAGC	2 cut(s)	372, 2153
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	5 cut(s)	63, 1063, 1359, 2766, 2918
BshNI	GGYRCC	1 cut(s)	1258
BsiHKAI	GWGCWC	3 cut(s)	230, 294, 2913
BsiSI	CCGG	3 cut(s)	71, 95, 672
BslFI	GGGAC	1 cut(s)	1628
BslI	CCNNNNNNNGG	6 cut(s)	58, 59, 70, 956, 2033, 2722
BsmAI	GTCTC	6 cut(s)	585, 761, 1171, 2437, 2961, 3016
BsmFI	GGGAC	1 cut(s)	1628
BsmI	GAATGC	3 cut(s)	1087, 2137, 2399
BsnI	GGCC	5 cut(s)	63, 1063, 1359, 2766, 2918
Bso31I	GGTCTC	1 cut(s)	761
Bsp1286I	GDGCHC	7 cut(s)	53, 230, 294, 701, 1290, 2026, 2913
Bsp1407I	TGTACA	1 cut(s)	2685
Bsp1720I	GCTNAGC	1 cut(s)	1455
Bsp19I	CCATGG	2 cut(s)	983, 2414
BspACI	CCGC	7 cut(s)	53, 83, 231, 413, 468, 470, 2723
BspANI	GGCC	5 cut(s)	63, 1063, 1359, 2766, 2918
BspCNI	CTCAG	4 cut(s)	280, 817, 829, 1144
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	8 cut(s)	21, 30, 700, 961, 1260, 1616, 1617, 2023
BspMAI	CTGCAG	2 cut(s)	433, 1705
BspMI	ACCTGC	1 cut(s)	1426
BspPI	GGATC	7 cut(s)	14, 23, 27, 36, 97, 1884, 2733
BspQI	GCTCTTC	2 cut(s)	299, 2868
BspT107I	GGYRCC	1 cut(s)	1258
BspTNI	GGTCTC	1 cut(s)	761
BsrBI	CCGCTC	1 cut(s)	2723
BsrDI	GCAATG	2 cut(s)	667, 1437
BsrFI	RCCGGY	1 cut(s)	671
BsrGI	TGTACA	1 cut(s)	2685
BsrI	ACTGG	5 cut(s)	44, 63, 1290, 2232, 2324
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	7 cut(s)	23, 468, 983, 1058, 1972, 2414, 2716
BssNI	GRCGYC	1 cut(s)	2823
BssSI	CACGAG	1 cut(s)	1168
BssT1I	CCWWGG	4 cut(s)	983, 1058, 2414, 2716
Bst2BI	CACGAG	1 cut(s)	1168
Bst2UI	CCWGG	2 cut(s)	24, 1992
Bst4CI	ACNGT	6 cut(s)	133, 523, 609, 689, 716, 1976
Bst6I	CTCTTC	5 cut(s)	299, 564, 2278, 2868, 2934
BstACI	GRCGYC	1 cut(s)	2823
BstAPI	GCANNNNNTGC	1 cut(s)	2189
BstAUI	TGTACA	1 cut(s)	2685
BstBAI	YACGTR	1 cut(s)	1726
BstC8I	GCNNGC	3 cut(s)	53, 673, 1664
BstDEI	CTNAG	9 cut(s)	288, 543, 772, 804, 837, 1152, 1407, 1455, 2537
BstDSI	CCRYGG	4 cut(s)	468, 983, 1972, 2414
BstFNI	CGCG	1 cut(s)	470
BstMAI	GTCTC	6 cut(s)	585, 761, 1171, 2437, 2961, 3016
BstMWI	GCNNNNNNNGC	3 cut(s)	2114, 2189, 2750
BstNI	CCWGG	2 cut(s)	24, 1992
BstNSI	RCATGY	4 cut(s)	1402, 1871, 2480, 2773
BstSCI	CCNGG	2 cut(s)	22, 1990
BstSFI	CTRYAG	3 cut(s)	429, 738, 1701
BstSLI	GKGCMC	1 cut(s)	1290
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	6 cut(s)	220, 1687, 1964, 2055, 2137, 3046
BstV2I	GAAGAC	3 cut(s)	1508, 1652, 2357
BstX2I	RGATCY	3 cut(s)	19, 28, 89
BstXI	CCANNNNNNTGG	1 cut(s)	2840
BstYI	RGATCY	3 cut(s)	19, 28, 89
BsuRI	GGCC	5 cut(s)	63, 1063, 1359, 2766, 2918
BtgI	CCRYGG	4 cut(s)	468, 983, 1972, 2414
BtgZI	GCGATG	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	2737
BtsI	GCAGTG	1 cut(s)	915
BtsIMutI	CAGTG	5 cut(s)	285, 721, 915, 1297, 2451
BveI	ACCTGC	1 cut(s)	1426
Cac8I	GCNNGC	3 cut(s)	53, 673, 1664
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	4 cut(s)	61, 902, 1615, 2785
Cfr42I	CCGCGG	1 cut(s)	471
CsiI	ACCWGGT	1 cut(s)	1990
Csp6I	GTAC	7 cut(s)	1072, 1988, 2006, 2314, 2474, 2686, 2962
CspCI	CAANNNNNGTGG	6 cut(s)	1768, 1803, 1920, 1955, 2578, 2613
CviQI	GTAC	7 cut(s)	1072, 1988, 2006, 2314, 2474, 2686, 2962
DdeI	CTNAG	9 cut(s)	288, 543, 772, 804, 837, 1152, 1407, 1455, 2537
DraI	TTTAAA	1 cut(s)	798
Eam1104I	CTCTTC	5 cut(s)	299, 564, 2278, 2868, 2934
EarI	CTCTTC	5 cut(s)	299, 564, 2278, 2868, 2934
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	4 cut(s)	983, 1058, 2414, 2716
Eco24I	GRGCYC	4 cut(s)	53, 294, 701, 2026
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	3 cut(s)	902, 1615, 2785
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	6 cut(s)	768, 1131, 1664, 2232, 2351, 2730
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	2 cut(s)	1615, 2785
EcoRII	CCWGG	2 cut(s)	22, 1990
EcoT14I	CCWWGG	4 cut(s)	983, 1058, 2414, 2716
EcoT38I	GRGCYC	4 cut(s)	53, 294, 701, 2026
ErhI	CCWWGG	4 cut(s)	983, 1058, 2414, 2716
FaqI	GGGAC	1 cut(s)	1628
FauI	CCCGC	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	2194
FbaI	TGATCA	2 cut(s)	2089, 2988
Fnu4HI	GCNGC	8 cut(s)	234, 468, 471, 1701, 1953, 2069, 2151, 3060
FriOI	GRGCYC	4 cut(s)	53, 294, 701, 2026
Fsp4HI	GCNGC	8 cut(s)	234, 468, 471, 1701, 1953, 2069, 2151, 3060
FspBI	CTAG	4 cut(s)	728, 1059, 1667, 1695
GluI	GCNGC	8 cut(s)	234, 468, 471, 1701, 1953, 2069, 2151, 3060
GsaI	CCCAGC	2 cut(s)	376, 2157
GsuI	CTGGAG	3 cut(s)	1149, 1694, 2499
HaeIII	GGCC	5 cut(s)	63, 1063, 1359, 2766, 2918
HapII	CCGG	3 cut(s)	71, 95, 672
Hin1I	GRCGYC	1 cut(s)	2823
HincII	GTYRAC	5 cut(s)	850, 1603, 1804, 1928, 2950
HindII	GTYRAC	5 cut(s)	850, 1603, 1804, 1928, 2950
HindIII	AAGCTT	1 cut(s)	2901
HpaI	GTTAAC	1 cut(s)	850
HpaII	CCGG	3 cut(s)	71, 95, 672
Hpy188III	TCNNGA	9 cut(s)	500, 602, 746, 764, 1208, 1673, 2516, 2748, 2819
HpyAV	CCTTC	7 cut(s)	167, 211, 417, 495, 893, 1106, 1315
HpyCH4III	ACNGT	6 cut(s)	133, 523, 609, 689, 716, 1976
HpyCH4IV	ACGT	6 cut(s)	274, 647, 999, 1725, 2736, 2823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	2114, 2189, 2750
HpyF3I	CTNAG	9 cut(s)	288, 543, 772, 804, 837, 1152, 1407, 1455, 2537
HpySE526I	ACGT	6 cut(s)	274, 647, 999, 1725, 2736, 2823
Hsp92I	GRCGYC	1 cut(s)	2823
KflI	GGGWCCC	1 cut(s)	1615
KroI	GCCGGC	1 cut(s)	671
KroNI	GCCGGC	1 cut(s)	673
Ksp22I	TGATCA	2 cut(s)	2089, 2988
KspAI	GTTAAC	1 cut(s)	850
KspI	CCGCGG	1 cut(s)	471
LguI	GCTCTTC	2 cut(s)	299, 2868
LmnI	GCTCC	7 cut(s)	704, 1200, 1348, 2021, 2518, 2720, 2750
Lsp1109I	GCAGC	6 cut(s)	220, 1687, 1964, 2055, 2137, 3046
LweI	GCATC	5 cut(s)	1114, 1225, 1417, 1964, 2006
MabI	ACCWGGT	1 cut(s)	1990
MaeI	CTAG	4 cut(s)	728, 1059, 1667, 1695
MaeII	ACGT	6 cut(s)	274, 647, 999, 1725, 2736, 2823
MbiI	CCGCTC	1 cut(s)	2723
MfeI	CAATTG	6 cut(s)	1281, 1650, 2031, 2118, 2132, 2848
MflI	RGATCY	3 cut(s)	19, 28, 89
MhlI	GDGCHC	7 cut(s)	53, 230, 294, 701, 1290, 2026, 2913
MlyI	GAGTC	5 cut(s)	85, 587, 1425, 1826, 1933
MmeI	TCCRAC	1 cut(s)	1307
MroNI	GCCGGC	1 cut(s)	671
MroXI	GAANNNNTTC	2 cut(s)	1137, 2227
MslI	CAYNNNNRTG	4 cut(s)	342, 2142, 2693, 2924
MspA1I	CMGCKG	4 cut(s)	233, 415, 470, 3088
MspI	CCGG	3 cut(s)	71, 95, 672
MspR9I	CCNGG	2 cut(s)	24, 1992
MunI	CAATTG	6 cut(s)	1281, 1650, 2031, 2118, 2132, 2848
Mva1269I	GAATGC	3 cut(s)	1087, 2137, 2399
MvaI	CCWGG	2 cut(s)	24, 1992
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	3 cut(s)	2114, 2189, 2750
NaeI	GCCGGC	1 cut(s)	673
NcoI	CCATGG	2 cut(s)	983, 2414
NdeI	CATATG	1 cut(s)	2194
NgoMIV	GCCGGC	1 cut(s)	671
NlaIV	GGNNCC	8 cut(s)	21, 30, 700, 961, 1260, 1616, 1617, 2023
NmuCI	GTSAC	8 cut(s)	515, 913, 1721, 1739, 1814, 2483, 2843, 2894
NspI	RCATGY	4 cut(s)	1402, 1871, 2480, 2773
PciI	ACATGT	1 cut(s)	2769
PciSI	GCTCTTC	2 cut(s)	299, 2868
PctI	GAATGC	3 cut(s)	1087, 2137, 2399
PdiI	GCCGGC	1 cut(s)	673
PdmI	GAANNNNTTC	2 cut(s)	1137, 2227
PfeI	GAWTC	9 cut(s)	598, 776, 887, 1568, 1583, 1730, 1963, 2228, 2601
PflFI	GACNNNGTC	1 cut(s)	2783
PflMI	CCANNNNNTGG	1 cut(s)	2033
PkrI	GCNGC	8 cut(s)	235, 469, 472, 1702, 1954, 2070, 2152, 3061
PleI	GAGTC	5 cut(s)	84, 586, 1424, 1826, 1932
PpsI	GAGTC	5 cut(s)	84, 586, 1424, 1826, 1932
Ppu21I	YACGTR	1 cut(s)	1726
PpuMI	RGGWCCY	2 cut(s)	1615, 2785
PscI	ACATGT	1 cut(s)	2769
PshBI	ATTAAT	1 cut(s)	2508
PsiI	TTATAA	1 cut(s)	2331
Psp124BI	GAGCTC	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	274
Psp5II	RGGWCCY	2 cut(s)	1615, 2785
Psp6I	CCWGG	2 cut(s)	22, 1990
PspFI	CCCAGC	2 cut(s)	372, 2153
PspGI	CCWGG	2 cut(s)	22, 1990
PspN4I	GGNNCC	8 cut(s)	21, 30, 700, 961, 1260, 1616, 1617, 2023
PspPI	GGNCC	4 cut(s)	61, 902, 1615, 2785
PspPPI	RGGWCCY	2 cut(s)	1615, 2785
PstI	CTGCAG	2 cut(s)	433, 1705
PsuI	RGATCY	3 cut(s)	19, 28, 89
PsyI	GACNNNGTC	1 cut(s)	2783
PvuII	CAGCTG	1 cut(s)	3088
RsaI	GTAC	7 cut(s)	1073, 1989, 2007, 2315, 2475, 2687, 2963
RsaNI	GTAC	7 cut(s)	1072, 1988, 2006, 2314, 2474, 2686, 2962
RseI	CAYNNNNRTG	4 cut(s)	342, 2142, 2693, 2924
SacI	GAGCTC	1 cut(s)	294
SacII	CCGCGG	1 cut(s)	471
SapI	GCTCTTC	2 cut(s)	299, 2868
SatI	GCNGC	8 cut(s)	234, 468, 471, 1701, 1953, 2069, 2151, 3060
Sau96I	GGNCC	4 cut(s)	61, 902, 1615, 2785
ScaI	AGTACT	1 cut(s)	2315
SchI	GAGTC	5 cut(s)	85, 587, 1425, 1826, 1933
ScrFI	CCNGG	2 cut(s)	24, 1992
SduI	GDGCHC	7 cut(s)	53, 230, 294, 701, 1290, 2026, 2913
SexAI	ACCWGGT	1 cut(s)	1990
SfaNI	GCATC	5 cut(s)	1114, 1225, 1417, 1964, 2006
SfcI	CTRYAG	3 cut(s)	429, 738, 1701
Sfr303I	CCGCGG	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	471
SinI	GGWCC	3 cut(s)	902, 1615, 2785
SmiMI	CAYNNNNRTG	4 cut(s)	342, 2142, 2693, 2924
SmlI	CTYRAG	5 cut(s)	280, 506, 1361, 2760, 2912
SmoI	CTYRAG	5 cut(s)	280, 506, 1361, 2760, 2912
SsiI	CCGC	7 cut(s)	53, 83, 231, 413, 468, 470, 2723
SspI	AATATT	3 cut(s)	883, 2506, 2596
SspMI	CTAG	4 cut(s)	728, 1059, 1667, 1695
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	22, 1990
StyI	CCWWGG	4 cut(s)	983, 1058, 2414, 2716
TaaI	ACNGT	6 cut(s)	133, 523, 609, 689, 716, 1976
TaiI	ACGT	6 cut(s)	277, 650, 1002, 1728, 2739, 2826
TaqI	TCGA	1 cut(s)	2529
TaqII	GACCGA	1 cut(s)	644
TatI	WGTACW	5 cut(s)	1071, 2005, 2313, 2473, 2685
TauI	GCSGC	2 cut(s)	470, 473
TfiI	GAWTC	9 cut(s)	598, 776, 887, 1568, 1583, 1730, 1963, 2228, 2601
TscAI	CASTG	5 cut(s)	292, 721, 922, 1297, 2451
TseFI	GTSAC	8 cut(s)	515, 913, 1721, 1739, 1814, 2483, 2843, 2894
TseI	GCWGC	6 cut(s)	233, 1700, 1952, 2068, 2150, 3059
Tsp45I	GTSAC	8 cut(s)	515, 913, 1721, 1739, 1814, 2483, 2843, 2894
TspGWI	ACGGA	1 cut(s)	2949
TspRI	CASTG	5 cut(s)	292, 721, 922, 1297, 2451
Tth111I	GACNNNGTC	1 cut(s)	2783
Van91I	CCANNNNNTGG	1 cut(s)	2033
VpaK11BI	GGWCC	3 cut(s)	902, 1615, 2785
VspI	ATTAAT	1 cut(s)	2508
XapI	RAATTY	9 cut(s)	585, 641, 908, 1793, 1917, 2048, 2300, 2620, 2669
XceI	RCATGY	4 cut(s)	1402, 1871, 2480, 2773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	609
XmaJI	CCTAGG	1 cut(s)	1058
XmnI	GAANNNNTTC	2 cut(s)	1137, 2227
XspI	CTAG	4 cut(s)	728, 1059, 1667, 1695
ZraI	GACGTC	1 cut(s)	2824
ZrmI	AGTACT	1 cut(s)	2315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.