RchiOBHm_Chr6g0290811

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000779
Physical Location & Seq
Reverse (-)
53797917 .. 53798250
334 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26092

Sequence Viewer

Length: 282 bp
ATGTTATGGAATTTACACTGGTTCTTTTTTTCTAAGATCATAAGATTCTATGTAGTTTTTATCCGCTACTGTCGAGGCTTTGAGTTGATGGAATCTGTAGTACCTACGATGTTTGGGGTTGATTTTCGTGTTCTGAAAGCTGTTGCTATAGAAAATTCTAATGATCTTGACGCAGCTGTCAATGATGTGCTCAATGAGGTTCTCCCTTTCTTGACCAAACATCCTGAGAGTCCTGCAAAGGTTCAGACTCCTAGCAGCCAACCAACTGCAGGTATTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

93

Amino Acids

10.66

Weight (kDa)

6.04

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 260
AciI CCGC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 10, 154
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 269
AluBI AGCT 2 cut(s) 140, 176
AluI AGCT 2 cut(s) 140, 176
Alw21I GWGCWC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 173, 255
ApoI RAATTY 2 cut(s) 10, 154
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 185, 267
BccI CCATC 1 cut(s) 82
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 4 cut(s) 96, 147, 267, 278
BfuAI ACCTGC 1 cut(s) 260
BisI GCNGC 2 cut(s) 174, 256
BlsI GCNGC 2 cut(s) 175, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 185, 267
BsiHKAI GWGCWC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 36, 163
BspACI CCGC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 23
BssMI GATC 2 cut(s) 36, 163
Bst4CI ACNGT 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 33, 225
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 2 cut(s) 39, 166
BstMBI GATC 2 cut(s) 36, 163
BstSFI CTRYAG 4 cut(s) 96, 147, 267, 278
BstV1I GCAGC 2 cut(s) 185, 267
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 16
BveI ACCTGC 1 cut(s) 260
CseI GACGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 101
CviJI RGCY 4 cut(s) 78, 140, 176, 258
CviKI_1 RGCY 4 cut(s) 78, 140, 176, 258
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 2 cut(s) 33, 225
DpnI GATC 2 cut(s) 38, 165
DpnII GATC 2 cut(s) 36, 163
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
FaiI YATR 5 cut(s) 7, 41, 51, 149, 280
Fnu4HI GCNGC 2 cut(s) 174, 256
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 174, 256
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 174, 256
HgaI GACGC 1 cut(s) 179
HinfI GANTC 4 cut(s) 45, 92, 229, 247
Hpy188I TCNGA 2 cut(s) 135, 246
Hpy188III TCNNGA 3 cut(s) 167, 211, 224
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 236, 269
HpyF3I CTNAG 2 cut(s) 33, 225
Kzo9I GATC 2 cut(s) 36, 163
LpnPI CCDG 4 cut(s) 4, 237, 246, 255
Lsp1109I GCAGC 2 cut(s) 185, 267
MaeI CTAG 1 cut(s) 252
MalI GATC 2 cut(s) 38, 165
MboI GATC 2 cut(s) 36, 163
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 10, 154
MlyI GAGTC 2 cut(s) 238, 241
MnlI CCTC 2 cut(s) 68, 190
MspA1I CMGCKG 1 cut(s) 176
NdeII GATC 2 cut(s) 36, 163
PfeI GAWTC 2 cut(s) 45, 92
PkrI GCNGC 2 cut(s) 175, 257
PleI GAGTC 2 cut(s) 237, 241
PpsI GAGTC 2 cut(s) 237, 241
PstI CTGCAG 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SatI GCNGC 2 cut(s) 174, 256
Sau3AI GATC 2 cut(s) 36, 163
SchI GAGTC 2 cut(s) 238, 241
SduI GDGCHC 1 cut(s) 192
SetI ASST 6 cut(s) 106, 142, 178, 201, 243, 274
SfcI CTRYAG 4 cut(s) 96, 147, 267, 278
SgeI CNNG 8 cut(s) 31, 86, 140, 179, 223, 236, 245, 264
Sse9I AATT 2 cut(s) 10, 154
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 73
TasI AATT 2 cut(s) 10, 154
TfiI GAWTC 2 cut(s) 45, 92
TscAI CASTG 1 cut(s) 23
TseI GCWGC 2 cut(s) 173, 255
TspRI CASTG 1 cut(s) 23
XapI RAATTY 2 cut(s) 10, 154
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.