Rh6AG179500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000779
Physical Location & Seq
Forward (+)
31099863 .. 31100270
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG179500.1

Sequence Viewer

Length: 408 bp
ATGGGTCACAGGGTAGAAACCAACACTTCTACTAAGCGAGTGGGTTTGGGGGGGGGGGGTGAAAGAGAGGTGGAGTCTCAAATTCATGGTGTGAATCCAGAACCAGTAGCCCAACCATCTTGGTTGATGAAGCAGACCGGACCACGGAAATTCACGTTACATGATGGCAATGGAAATGCAGGCATTGGCTACAGCAGCAGCTTGGGATTCCAAGAGAACGACAGTGATGTGCCTCCTATAGTTTCTGAAGCTCTGAAAGGTCAAGAGACCTTAGATTCAATTCATTCCTTGTGTTTAAAAAGTCAGAGAAAGAAACATATTTGTGAAAATGCTACTGAGGACTTTGTTAACCATGCTGTCAATCTTAGTTCTGTGAGTGAAGGCCAGAGTTTGTCACTGCTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.48

Weight (kDa)

5.82

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 81, 149
AcuI CTGAAG 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 279
AluBI AGCT 2 cut(s) 201, 251
AluI AGCT 2 cut(s) 201, 251
Alw26I GTCTC 2 cut(s) 81, 260
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 195, 198
ApoI RAATTY 2 cut(s) 81, 149
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 207, 210
BccI CCATC 2 cut(s) 124, 158
BcoDI GTCTC 2 cut(s) 81, 260
BfmI CTRYAG 2 cut(s) 190, 237
BisI GCNGC 2 cut(s) 196, 199
BlsI GCNGC 2 cut(s) 197, 200
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 207, 210
BshFI GGCC 1 cut(s) 384
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 81, 260
BsnI GGCC 1 cut(s) 384
Bso31I GGTCTC 1 cut(s) 260
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 4 cut(s) 33, 271, 336, 365
BstDSI CCRYGG 1 cut(s) 143
BstMAI GTCTC 2 cut(s) 81, 260
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstSFI CTRYAG 2 cut(s) 190, 237
BstV1I GCAGC 2 cut(s) 207, 210
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 229, 395
Cac8I GCNNGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 140
CviAII CATG 3 cut(s) 86, 161, 353
CviJI RGCY 5 cut(s) 110, 189, 201, 251, 384
CviKI_1 RGCY 5 cut(s) 110, 189, 201, 251, 384
DdeI CTNAG 4 cut(s) 33, 271, 336, 365
DraI TTTAAA 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 267
FaeI CATG 3 cut(s) 89, 164, 356
FaiI YATR 5 cut(s) 87, 162, 239, 318, 354
FatI CATG 3 cut(s) 85, 160, 352
Fnu4HI GCNGC 2 cut(s) 196, 199
Fsp4HI GCNGC 2 cut(s) 196, 199
GluI GCNGC 2 cut(s) 196, 199
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 138
Hin1II CATG 3 cut(s) 89, 164, 356
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 4 cut(s) 74, 94, 207, 275
HpaI GTTAAC 1 cut(s) 349
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 3 cut(s) 247, 255, 306
Hpy188III TCNNGA 3 cut(s) 98, 263, 405
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 4 cut(s) 33, 271, 336, 365
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 3 cut(s) 89, 164, 356
KspAI GTTAAC 1 cut(s) 349
LpnPI CCDG 5 cut(s) 111, 117, 151, 165, 398
Lsp1109I GCAGC 2 cut(s) 207, 210
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 3 cut(s) 5, 156, 393
MluCI AATT 3 cut(s) 81, 149, 279
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 3 cut(s) 61, 243, 331
MseI TTAA 2 cut(s) 296, 348
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 195
NlaIII CATG 3 cut(s) 89, 164, 356
NmuCI GTSAC 2 cut(s) 5, 393
PfeI GAWTC 3 cut(s) 94, 207, 275
PkrI GCNGC 2 cut(s) 197, 200
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 296, 348
SatI GCNGC 2 cut(s) 196, 199
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 83
SetI ASST 6 cut(s) 72, 158, 203, 253, 262, 272
SfcI CTRYAG 2 cut(s) 190, 237
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 3 cut(s) 81, 149, 279
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 158
TasI AATT 3 cut(s) 81, 149, 279
TfiI GAWTC 3 cut(s) 94, 207, 275
Tru1I TTAA 2 cut(s) 296, 348
Tru9I TTAA 2 cut(s) 296, 348
TscAI CASTG 2 cut(s) 229, 402
TseFI GTSAC 2 cut(s) 5, 393
TseI GCWGC 2 cut(s) 195, 198
Tsp45I GTSAC 2 cut(s) 5, 393
TspDTI ATGAA 3 cut(s) 74, 143, 272
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 2 cut(s) 229, 402
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 2 cut(s) 81, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.