Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000391.1

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Reverse (-)

68243 .. 69214

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000391.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggttgagaatgagaaactaggaaaaaagcttgagccccttggcttgacaattaatgacataaatcctgatggtcattgcctctaccgtgctatccaggatcaactagcccacctttctggaggctcttcaccttactcataccaagagcttcgagaaatggtggctctgtatatgtgccatgtacccgagtataatggtattctcaatattggctgcactaggcttcctgataattacaagggtgatgacagatgtgactcccacaaaattttcactgacctgctggttgctttttacttgggatacatagacaagcagcctagcctcagaaggtatgatgatagtcaagctaaagtttcatctatcattttgaacgaagataaatatatgtttatgactgttgccaatccatgcactgctttagtttttaagtattgtccaattggtatagttgaggtgtcagagaagtggtttttggaggtgatgaacatgaatttggaaaccatgataaggagtttaattccagagtgcaaggattgcagttttttgtggcgtctcatgcagatggagctggtttcaaataagttctatgtgttaataaaggagctggggagagcacttgctattttgcctatgagtttgctcaaaattacaactggtagtagagagcagattgagcatcttcaccagcaagtgaaaagggcagggttgtatattgaccttaaagaggtgaagaggagaggaaagctttcggtattgatggggagcaacaatgagagggaaaagaagagcaaagagtttatagaattgggcaaagaaaacgatatattgagtagcattggttcgcgaagctccagggactatgaggaacaaatttcaaagctagaggcagtagctcaaaggcaagcagggagtggtgaactaattgtggtatgcaatataaactatctcatatccctggtctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009610 GO:0009617 GO:0009620 GO:0009877 GO:0009987 GO:0010033 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0036377 GO:0042221 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

323

Amino Acids

36.88

Weight (kDa)

6.35

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	291
AccII	CGCG	1 cut(s)	850
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	3 cut(s)	270, 496, 876
AcyI	GRCGYC	1 cut(s)	556
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	2 cut(s)	513, 730
AgsI	TTSAA	3 cut(s)	376, 582, 882
AjnI	CCWGG	3 cut(s)	96, 857, 960
AjuI	GAANNNNNNNTTGG	4 cut(s)	461, 482, 493, 514
AluBI	AGCT	9 cut(s)	31, 151, 353, 574, 610, 751, 855, 886, 899
AluI	AGCT	9 cut(s)	31, 151, 353, 574, 610, 751, 855, 886, 899
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	216, 319
ApoI	RAATTY	3 cut(s)	270, 496, 876
AseI	ATTAAT	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	751
AsuHPI	GGTGA	6 cut(s)	123, 257, 496, 680, 745, 932
AvaI	CYCGRG	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	203, 331
BccI	CCATC	3 cut(s)	65, 562, 757
BciT130I	CCWGG	3 cut(s)	98, 859, 962
BciVI	GTATCC	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	5 cut(s)	20, 107, 222, 324, 887
BfuAI	ACCTGC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	2 cut(s)	217, 320
BlsI	GCNGC	2 cut(s)	218, 321
Bme1390I	CCNGG	3 cut(s)	98, 859, 962
BmeT110I	CYCGRG	1 cut(s)	188
BmrFI	CCNGG	3 cut(s)	98, 859, 962
BmsI	GCATC	1 cut(s)	691
BpmI	CTGGAG	2 cut(s)	141, 841
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	556
BsaJI	CCNNGG	3 cut(s)	40, 858, 960
Bsc4I	CCNNNNNNNGG	2 cut(s)	513, 730
Bse1I	ACTGG	1 cut(s)	664
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	3 cut(s)	98, 859, 962
BseDI	CCNNGG	3 cut(s)	40, 858, 960
BseLI	CCNNNNNNNGG	2 cut(s)	513, 730
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	1 cut(s)	754
BseXI	GCAGC	2 cut(s)	203, 331
BseYI	CCCAGC	1 cut(s)	610
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	2 cut(s)	513, 730
BsmAI	GTCTC	1 cut(s)	563
BsmBI	CGTCTC	1 cut(s)	563
BsmFI	GGGAC	1 cut(s)	875
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	39, 622
Bsp143I	GATC	1 cut(s)	100
Bsp68I	TCGCGA	1 cut(s)	850
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	850
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	108
BspQI	GCTCTTC	2 cut(s)	133, 785
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	3 cut(s)	40, 858, 960
BssMI	GATC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	556
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	3 cut(s)	98, 859, 962
Bst4CI	ACNGT	2 cut(s)	89, 403
Bst6I	CTCTTC	3 cut(s)	133, 731, 785
BstACI	GRCGYC	1 cut(s)	556
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	909
BstDEI	CTNAG	1 cut(s)	329
BstENI	CCTNNNNNAGG	1 cut(s)	728
BstFNI	CGCG	1 cut(s)	850
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	540, 562, 571, 679
BstNI	CCWGG	3 cut(s)	98, 859, 962
BstSCI	CCNGG	3 cut(s)	96, 857, 960
BstUI	CGCG	1 cut(s)	850
BstV1I	GCAGC	2 cut(s)	203, 331
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	276, 417
BtuMI	TCGCGA	1 cut(s)	850
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	909
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	5 cut(s)	182, 414, 493, 508, 562
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	3 cut(s)	133, 731, 785
EarI	CTCTTC	3 cut(s)	133, 731, 785
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	728
EcoRII	CCWGG	3 cut(s)	96, 857, 960
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	563
FaeI	CATG	5 cut(s)	185, 417, 496, 511, 565
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	5 cut(s)	181, 413, 492, 507, 561
Fnu4HI	GCNGC	2 cut(s)	217, 320
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	217, 320
FspBI	CTAG	5 cut(s)	20, 107, 222, 324, 887
GluI	GCNGC	2 cut(s)	217, 320
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	2 cut(s)	141, 841
HgaI	GACGC	1 cut(s)	545
Hin1I	GRCGYC	1 cut(s)	556
Hin1II	CATG	5 cut(s)	185, 417, 496, 511, 565
HindIII	AAGCTT	2 cut(s)	29, 749
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	6 cut(s)	123, 257, 496, 680, 745, 932
Hpy166II	GTNNAC	1 cut(s)	923
Hpy188I	TCNGA	2 cut(s)	332, 466
Hpy188III	TCNNGA	6 cut(s)	68, 120, 155, 230, 527, 849
Hpy8I	GTNNAC	1 cut(s)	923
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	2 cut(s)	89, 403
HpyCH4V	TGCA	6 cut(s)	219, 417, 534, 543, 565, 939
HpyF10VI	GCNNNNNNNGC	4 cut(s)	540, 562, 571, 679
HpyF3I	CTNAG	1 cut(s)	329
Hsp92I	GRCGYC	1 cut(s)	556
Hsp92II	CATG	5 cut(s)	185, 417, 496, 511, 565
Kzo9I	GATC	1 cut(s)	100
LguI	GCTCTTC	2 cut(s)	133, 785
LmnI	GCTCC	4 cut(s)	571, 607, 768, 860
Lsp1109I	GCAGC	2 cut(s)	203, 331
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	5 cut(s)	20, 107, 222, 324, 887
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	5 cut(s)	120, 392, 677, 748, 802
MfeI	CAATTG	1 cut(s)	444
MhlI	GDGCHC	2 cut(s)	39, 622
MlyI	GAGTC	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	751
MseI	TTAA	5 cut(s)	54, 432, 521, 599, 726
MslI	CAYNNNNRTG	1 cut(s)	566
MspR9I	CCNGG	3 cut(s)	98, 859, 962
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	3 cut(s)	98, 859, 962
MvnI	CGCG	1 cut(s)	850
MwoI	GCNNNNNNNGC	4 cut(s)	540, 562, 571, 679
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	5 cut(s)	185, 417, 496, 511, 565
NmuCI	GTSAC	1 cut(s)	257
NruI	TCGCGA	1 cut(s)	850
PciSI	GCTCTTC	2 cut(s)	133, 785
PdmI	GAANNNNTTC	1 cut(s)	751
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	218, 321
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	96, 857, 960
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	3 cut(s)	96, 857, 960
PsrI	GAACNNNNNNTAC	2 cut(s)	829, 861
RruI	TCGCGA	1 cut(s)	850
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	566
SapI	GCTCTTC	2 cut(s)	133, 785
SaqAI	TTAA	5 cut(s)	54, 432, 521, 599, 726
SatI	GCNGC	2 cut(s)	217, 320
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	3 cut(s)	98, 859, 962
SduI	GDGCHC	2 cut(s)	39, 622
SfaNI	GCATC	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	5 cut(s)	20, 107, 222, 324, 887
StyD4I	CCNGG	3 cut(s)	96, 857, 960
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	89, 403
TaqI	TCGA	1 cut(s)	154
Tru1I	TTAA	5 cut(s)	54, 432, 521, 599, 726
Tru9I	TTAA	5 cut(s)	54, 432, 521, 599, 726
TscAI	CASTG	2 cut(s)	283, 424
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	2 cut(s)	216, 319
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	351, 503, 509
TspRI	CASTG	2 cut(s)	283, 424
VspI	ATTAAT	1 cut(s)	54
XagI	CCTNNNNNAGG	1 cut(s)	728
XapI	RAATTY	3 cut(s)	270, 496, 876
XmnI	GAANNNNTTC	1 cut(s)	751
XspI	CTAG	5 cut(s)	20, 107, 222, 324, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.