Rh6CG405000

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
59063020 .. 59082337
19318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG405000.1

Sequence Viewer

Length: 561 bp
ATGCACTTCAGATTTGTTGTTCATGTACTGATAAAGACGGAGCAGATTAGTTTATCTATAGTAGGGCTGTGTGGATATGGAAGAGCAACATTTAGAAAAGCTCAAAAACAAGCTGAAAGAGAAAACTCCAATGATCTTGACGCAAGTGTCAATGATGTGCTGAATGAGGTCCTCCATTTCTTGAACAAGCATCCTGAGAGTCGTGCAAATGTTCAATCTCCTAGCAGCCAACCAATTGCAGCTGAATCTGAGGAGCAAAGTAAAGAATTGCTTCATCAGCGGGTAGATAAGGAAGTAGAGGTTGAGCTATTTCTAGCAGCAGGATTCAGTGCTAGTGAGGTAGAAGGAATCAATTCTCCATGGGATGAAGAACATATTCCAGAAGAAATTCTGATTGCTACAAATCCTGTGAAGTGGGGTGTAGGTAATATTGTGAGGATTTTGCACAGTATCATGGAGGAGGATGTTTCTCTCACCATAATTGCTATGGTTGGGTTGAACTTGTCGACTGTCAGTAATGATGAAGATTATGGTGACCGCCGCAACTATCCTATTCTATAG

Protein Analysis

186

Amino Acids

20.86

Weight (kDa)

4.83

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 506
AciI CCGC 3 cut(s) 280, 538, 541
AcsI RAATTY 1 cut(s) 387
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 3 cut(s) 184, 215, 499
AluBI AGCT 4 cut(s) 101, 113, 242, 307
AluI AGCT 4 cut(s) 101, 113, 242, 307
ApeKI GCWGC 3 cut(s) 225, 239, 317
ApoI RAATTY 1 cut(s) 387
Asp700I GAANNNNTTC 4 cut(s) 270, 352, 375, 387
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 466, 545
AvaII GGWCC 1 cut(s) 169
BbvI GCAGC 3 cut(s) 237, 251, 329
BfaI CTAG 3 cut(s) 222, 314, 333
BfmI CTRYAG 2 cut(s) 57, 557
BisI GCNGC 4 cut(s) 226, 240, 318, 541
BlsI GCNGC 4 cut(s) 227, 241, 319, 542
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmsI GCATC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 3 cut(s) 190, 370, 469
BseMII CTCAG 2 cut(s) 186, 240
BseRI GAGGAG 2 cut(s) 266, 473
BseXI GCAGC 3 cut(s) 237, 251, 329
Bsp143I GATC 1 cut(s) 133
Bsp19I CCATGG 1 cut(s) 359
BspACI CCGC 3 cut(s) 280, 538, 541
BspCNI CTCAG 2 cut(s) 187, 241
BspQI GCTCTTC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 449, 511
Bst6I CTCTTC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 195, 249
BstDSI CCRYGG 1 cut(s) 359
BstEII GGTNACC 1 cut(s) 533
BstF5I GGATG 3 cut(s) 190, 370, 469
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstPI GGTNACC 1 cut(s) 533
BstSFI CTRYAG 2 cut(s) 57, 557
BstV1I GCAGC 3 cut(s) 237, 251, 329
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 3 cut(s) 190, 370, 469
BtsIMutI CAGTG 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 26
CviAII CATG 3 cut(s) 23, 360, 454
CviJI RGCY 6 cut(s) 67, 101, 113, 228, 242, 307
CviKI_1 RGCY 6 cut(s) 67, 101, 113, 228, 242, 307
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 2 cut(s) 195, 249
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 169
Eco91I GGTNACC 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 3 cut(s) 26, 363, 457
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FatI CATG 3 cut(s) 22, 359, 453
FauI CCCGC 1 cut(s) 273
FblI GTMKAC 1 cut(s) 506
Fnu4HI GCNGC 4 cut(s) 226, 240, 318, 541
FokI GGATG 3 cut(s) 177, 377, 476
Fsp4HI GCNGC 4 cut(s) 226, 240, 318, 541
FspBI CTAG 3 cut(s) 222, 314, 333
GluI GCNGC 4 cut(s) 226, 240, 318, 541
HgaI GACGC 1 cut(s) 149
Hin1II CATG 3 cut(s) 26, 363, 457
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 4 cut(s) 199, 245, 324, 348
HphI GGTGA 2 cut(s) 466, 545
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 3 cut(s) 11, 250, 393
Hpy188III TCNNGA 4 cut(s) 137, 181, 194, 380
Hpy8I GTNNAC 1 cut(s) 507
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 2 cut(s) 449, 511
HpyCH4V TGCA 4 cut(s) 4, 206, 239, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 2 cut(s) 195, 249
Hsp92II CATG 3 cut(s) 26, 363, 457
Kzo9I GATC 1 cut(s) 133
LguI GCTCTTC 1 cut(s) 76
LmnI GCTCC 2 cut(s) 40, 253
LpnPI CCDG 4 cut(s) 207, 306, 393, 420
Lsp1109I GCAGC 3 cut(s) 237, 251, 329
LweI GCATC 1 cut(s) 199
MaeI CTAG 3 cut(s) 222, 314, 333
MaeIII GTNAC 1 cut(s) 533
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 4 cut(s) 93, 380, 395, 536
MfeI CAATTG 1 cut(s) 234
MluCI AATT 5 cut(s) 234, 266, 352, 387, 480
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 8 cut(s) 160, 182, 244, 292, 331, 429, 451, 454
MroXI GAANNNNTTC 4 cut(s) 270, 352, 375, 387
MspA1I CMGCKG 2 cut(s) 242, 280
MunI CAATTG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 277
NcoI CCATGG 1 cut(s) 359
NdeII GATC 1 cut(s) 133
NlaIII CATG 3 cut(s) 26, 363, 457
NmuCI GTSAC 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 76
PdmI GAANNNNTTC 4 cut(s) 270, 352, 375, 387
PfeI GAWTC 3 cut(s) 245, 324, 348
PkrI GCNGC 4 cut(s) 227, 241, 319, 542
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 533
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SalI GTCGAC 1 cut(s) 505
SapI GCTCTTC 1 cut(s) 76
SatI GCNGC 4 cut(s) 226, 240, 318, 541
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 208
SetI ASST 8 cut(s) 103, 115, 171, 244, 303, 309, 342, 427
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 2 cut(s) 57, 557
SinI GGWCC 1 cut(s) 169
Sse9I AATT 5 cut(s) 234, 266, 352, 387, 480
SsiI CCGC 3 cut(s) 280, 538, 541
SspI AATATT 1 cut(s) 430
SspMI CTAG 3 cut(s) 222, 314, 333
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 449, 511
TaqI TCGA 1 cut(s) 506
TasI AATT 5 cut(s) 234, 266, 352, 387, 480
TatI WGTACW 1 cut(s) 25
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 3 cut(s) 245, 324, 348
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 3 cut(s) 225, 239, 317
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 4 cut(s) 11, 263, 381, 537
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 506
XmnI GAANNNNTTC 4 cut(s) 270, 352, 375, 387
XspI CTAG 3 cut(s) 222, 314, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.