Rroxscaffold_7G00217900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000779
Physical Location & Seq
Reverse (-)
68458712 .. 68484912
26201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217900.1

Sequence Viewer

Length: 522 bp
ATGGGCGAGCTCATTACCGAGGTAGGTAGCTTTGAGCATCTCCTCGAGAAACGGATGCTAGGAAGAATGCGTCCAAAGGAACTTATGTGCCCGGCAAACACCGTACGGTGGCTGCCCCGAACTACCAGCCCCACCACTTATGATCCCTATTATCAAGGCGAAGAGGTTTTCCGGGATGATGATGAGGAAGAGGAGAATGATAGCCGACAGAAGAAAGAACCCCGCCTTGAAGCAGTTGAAAATAACCAAGGAACCAGTCAAGCTCAAGTCCGTAGTGGCCACACTCGCTTAACGGATGAATTTTCTATCCCGAATAGAAAGTTTGCAGAGAATATGAAGCTACTTGGCGTTGATTTTCGTGTAATGAAAGTTGTTGTTGTAGAAAATCCCAATGATCTTAATGAAGTTGTCAATGATGTGCTGAATGAGGTTCTCCTTTTCTTGAACAAGCGTCCCGAAAGTCCTCCAAATGTTCGGTCTCCTAACAGCCATTCAACTACAAATGAATCGAAGAGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

173

Amino Acids

19.96

Weight (kDa)

5.07

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 223
AclWI GGATC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 4 cut(s) 230, 239, 445, 495
AluBI AGCT 4 cut(s) 10, 30, 263, 340
AluI AGCT 4 cut(s) 10, 30, 263, 340
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AsuC2I CCSGG 2 cut(s) 92, 173
AvaI CYCGRG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 279
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 99
BcnI CCSGG 2 cut(s) 92, 173
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 2 cut(s) 92, 173
BmeT110I CYCGRG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 92, 173
BmsI GCATC 2 cut(s) 45, 46
BpuEI CTTGAG 1 cut(s) 249
BpuMI CCSGG 2 cut(s) 92, 173
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 18, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 18, 247
BseGI GGATG 3 cut(s) 60, 181, 301
BseLI CCNNNNNNNGG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 2 cut(s) 32, 206
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 92, 172
BsiWI CGTACG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 438
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 12, 92
Bsp143I GATC 2 cut(s) 142, 394
BspACI CCGC 1 cut(s) 223
BspANI GGCC 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 483
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 18, 247
BssMI GATC 2 cut(s) 142, 394
BssT1I CCWWGG 1 cut(s) 247
Bst4CI ACNGT 2 cut(s) 103, 108
Bst6I CTCTTC 3 cut(s) 156, 183, 506
BstC8I GCNNGC 1 cut(s) 8
BstF5I GGATG 3 cut(s) 60, 181, 301
BstKTI GATC 2 cut(s) 145, 397
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 2 cut(s) 142, 394
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstSCI CCNGG 2 cut(s) 90, 171
BstSLI GKGCMC 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 3 cut(s) 60, 181, 301
Cac8I GCNNGC 1 cut(s) 8
CseI GACGC 2 cut(s) 59, 440
Csp6I GTAC 1 cut(s) 104
CviJI RGCY 9 cut(s) 10, 30, 112, 129, 204, 263, 279, 340, 489
CviKI_1 RGCY 9 cut(s) 10, 30, 112, 129, 204, 263, 279, 340, 489
CviQI GTAC 1 cut(s) 104
DpnI GATC 2 cut(s) 144, 396
DpnII GATC 2 cut(s) 142, 394
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 3 cut(s) 156, 183, 506
EarI CTCTTC 3 cut(s) 156, 183, 506
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 247
FaiI YATR 3 cut(s) 86, 141, 335
FaqI GGGAC 1 cut(s) 438
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 3 cut(s) 67, 188, 308
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 279
HapII CCGG 2 cut(s) 92, 172
HgaI GACGC 2 cut(s) 59, 440
HinfI GANTC 1 cut(s) 506
HpaII CCGG 2 cut(s) 92, 172
Hpy188III TCNNGA 4 cut(s) 46, 310, 442, 455
HpyCH4III ACNGT 2 cut(s) 103, 108
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
Kzo9I GATC 2 cut(s) 142, 394
LguI GCTCTTC 1 cut(s) 506
LpnPI CCDG 4 cut(s) 105, 139, 185, 268
Lsp1109I GCAGC 1 cut(s) 99
LweI GCATC 2 cut(s) 45, 46
MaeI CTAG 1 cut(s) 59
MalI GATC 2 cut(s) 144, 396
MboI GATC 2 cut(s) 142, 394
MboII GAAGA 4 cut(s) 75, 173, 200, 223
MhlI GDGCHC 2 cut(s) 12, 92
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 1 cut(s) 299
MluNI TGGCCA 1 cut(s) 279
MnlI CCTC 7 cut(s) 13, 53, 157, 178, 184, 421, 474
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
MseI TTAA 2 cut(s) 290, 399
Msp20I TGGCCA 1 cut(s) 279
MspI CCGG 2 cut(s) 92, 172
MspR9I CCNGG 2 cut(s) 92, 173
Mva1269I GAATGC 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 285
NciI CCSGG 2 cut(s) 92, 173
NdeII GATC 2 cut(s) 142, 394
NlaIV GGNNCC 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 506
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 506
Pfl23II CGTACG 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 12
PspLI CGTACG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 253
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SacI GAGCTC 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 506
SaqAI TTAA 2 cut(s) 290, 399
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 2 cut(s) 142, 394
ScrFI CCNGG 2 cut(s) 92, 173
SduI GDGCHC 2 cut(s) 12, 92
SetI ASST 8 cut(s) 12, 24, 28, 32, 168, 265, 342, 432
SfaNI GCATC 2 cut(s) 45, 46
Sfr274I CTCGAG 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 44, 264
SmoI CTYRAG 2 cut(s) 44, 264
Sse9I AATT 1 cut(s) 299
SsiI CCGC 1 cut(s) 223
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 90, 171
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 103, 108
TaqI TCGA 2 cut(s) 45, 509
TaqII GACCGA 1 cut(s) 465
TasI AATT 1 cut(s) 299
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 290, 399
Tru9I TTAA 2 cut(s) 290, 399
TseI GCWGC 1 cut(s) 112
TspDTI ATGAA 5 cut(s) 312, 350, 380, 417, 519
TspGWI ACGGA 3 cut(s) 67, 260, 308
XapI RAATTY 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 44
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.