Rh6CG338800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000779
Physical Location & Seq
Reverse (-)
52771276 .. 52771702
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG338800.1

Sequence Viewer

Length: 201 bp
ATGTTTGGGGTTGATTTTCGTGTTCTGAAAGCTGTTGCTATAGAAAATTCTAATGATCTTGACGCAGCTGTCAATGATGTGCTCAATGAGGTTCTCCCTTTCTTGACCAAACATCCTGAGAGTCCTGCAAAGGTTCAGACTCCTAGCAGCCAACCAACTGCAGTTGAACCTGAGGAGCAGAGTAAAGAATTAAATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

66

Amino Acids

7.24

Weight (kDa)

4.56

Isoelectric Point (pI)

62.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 46
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 2 cut(s) 32, 68
AluI AGCT 2 cut(s) 32, 68
Alw21I GWGCWC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 65, 147
ApoI RAATTY 1 cut(s) 46
AxyI CCTNAGG 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 77, 159
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 2 cut(s) 39, 159
BisI GCNGC 2 cut(s) 66, 148
BlsI GCNGC 2 cut(s) 67, 149
Bse21I CCTNAGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 108, 162
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 77, 159
BsiHKAI GWGCWC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 55
BspCNI CTCAG 2 cut(s) 109, 163
BspMAI CTGCAG 1 cut(s) 163
BssMI GATC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 117, 171
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstSFI CTRYAG 2 cut(s) 39, 159
BstV1I GCAGC 2 cut(s) 77, 159
Bsu36I CCTNAGG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 112
CseI GACGC 1 cut(s) 71
CviJI RGCY 3 cut(s) 32, 68, 150
CviKI_1 RGCY 3 cut(s) 32, 68, 150
DdeI CTNAG 2 cut(s) 117, 171
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 171
FaiI YATR 1 cut(s) 41
Fnu4HI GCNGC 2 cut(s) 66, 148
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 66, 148
FspBI CTAG 1 cut(s) 144
GluI GCNGC 2 cut(s) 66, 148
HgaI GACGC 1 cut(s) 71
HinfI GANTC 2 cut(s) 121, 139
Hpy188I TCNGA 2 cut(s) 27, 138
Hpy188III TCNNGA 3 cut(s) 59, 103, 116
HpyCH4V TGCA 2 cut(s) 128, 161
HpyF3I CTNAG 2 cut(s) 117, 171
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 3 cut(s) 129, 138, 183
Lsp1109I GCAGC 2 cut(s) 77, 159
MaeI CTAG 1 cut(s) 144
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 2 cut(s) 46, 188
MlyI GAGTC 2 cut(s) 130, 133
MnlI CCTC 2 cut(s) 82, 166
MseI TTAA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 68
NdeII GATC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 67, 149
PleI GAGTC 2 cut(s) 129, 133
PpsI GAGTC 2 cut(s) 129, 133
PstI CTGCAG 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 2 cut(s) 66, 148
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 2 cut(s) 130, 133
SduI GDGCHC 1 cut(s) 84
SetI ASST 5 cut(s) 34, 70, 93, 135, 172
SfcI CTRYAG 2 cut(s) 39, 159
SgeI CNNG 7 cut(s) 32, 71, 115, 128, 137, 156, 182
Sse9I AATT 2 cut(s) 46, 188
SspMI CTAG 1 cut(s) 144
TasI AATT 2 cut(s) 46, 188
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseI GCWGC 2 cut(s) 65, 147
XapI RAATTY 1 cut(s) 46
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.