Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

30833509 .. 30834087

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAAGCAGACCGGACCACGGAAATTCACGTTACATGATGGCAATGGAAATGCAGGCATTGGCTACAACAATAGCTTGGGATTCCAAGAGAACGACAGTGATGTCAGTCTAGTGCCTCCTATAGTTTCTAAAGCTCTGAAAGGTCAAGAAACCTTAGATTTAATTCATTCCTTGTGTTTAAAAAGTCAGAGAAAGAAACTTATTTGTGAAAATGCTACTGAGGACTTTGTTAACCATGCTGTTAATGTTAACGTTGATGTCAATCTTAGTTCTGTGATTGAAGGACCAGAGTTTGTCACTGCTATCTTGAAACAAGAGTTGGGTATAATGCCTTCACAGGGAACCTCTATTCACCAAGCTAAACCATGGTCTGCCCATGACGTCGAAGTGAATGATGAGAGGTTAGAATACCATGCTCTCCACCCATTTGATAAAATGCCTAGGCCAGATGTGTACTCATGGAATGCTATATTGGGTTGTTATTTTAAAGCTAAAGGGTTAATGGACGCTGGAGAATTGTTTCTAAAAATTCTTGAGAGGAACATTGTCTCGTGGAAAACTCTGATTAGTGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

192

Amino Acids

21.34

Weight (kDa)

5.96

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AatII	GACGTC	1 cut(s)	384
AclI	AACGTT	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	23, 528
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	2 cut(s)	18, 338
AgsI	TTSAA	2 cut(s)	281, 310
AjuI	GAANNNNNNNTTGG	4 cut(s)	302, 334, 455, 487
AluBI	AGCT	4 cut(s)	75, 134, 359, 491
AluI	AGCT	4 cut(s)	75, 134, 359, 491
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	1 cut(s)	553
AoxI	GGCC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	23, 528
Asp700I	GAANNNNTTC	1 cut(s)	519
AspA2I	CCTAGG	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	14, 284
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	14, 284
AvrII	CCTAGG	1 cut(s)	440
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BauI	CACGAG	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	574
BccI	CCATC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	553
BfaI	CTAG	2 cut(s)	110, 441
BfmI	CTRYAG	1 cut(s)	120
BlnI	CCTAGG	1 cut(s)	440
Bme18I	GGWCC	2 cut(s)	14, 284
BmgT120I	GGNCC	2 cut(s)	14, 284
BmiI	GGNNCC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	17, 365, 440
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 338
Bse3DI	GCAATG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	17, 365, 440
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	18, 338
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	18, 338
BsmAI	GTCTC	1 cut(s)	553
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp19I	CCATGG	1 cut(s)	365
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	17, 365, 440
BssNI	GRCGYC	1 cut(s)	381
BssSI	CACGAG	1 cut(s)	550
BssT1I	CCWWGG	2 cut(s)	365, 440
Bst2BI	CACGAG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	3 cut(s)	154, 219, 266
BstDSI	CCRYGG	2 cut(s)	17, 365
BstMAI	GTCTC	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	445
BtgI	CCRYGG	2 cut(s)	17, 365
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	103, 297
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	14, 284
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	6 cut(s)	35, 236, 366, 377, 413, 459
CviJI	RGCY	6 cut(s)	63, 75, 134, 359, 445, 491
CviKI_1	RGCY	6 cut(s)	63, 75, 134, 359, 445, 491
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	154, 219, 266
DraI	TTTAAA	2 cut(s)	180, 487
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	365, 440
Eco47I	GGWCC	2 cut(s)	14, 284
EcoT14I	CCWWGG	2 cut(s)	365, 440
ErhI	CCWWGG	2 cut(s)	365, 440
FaeI	CATG	6 cut(s)	38, 239, 369, 380, 416, 462
FaiI	YATR	9 cut(s)	36, 122, 237, 326, 367, 378, 414, 460, 470
FatI	CATG	6 cut(s)	34, 235, 365, 376, 412, 458
FspBI	CTAG	2 cut(s)	110, 441
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	6 cut(s)	38, 239, 369, 380, 416, 462
HincII	GTYRAC	2 cut(s)	232, 250
HindII	GTYRAC	2 cut(s)	232, 250
HinfI	GANTC	1 cut(s)	81
HpaI	GTTAAC	2 cut(s)	232, 250
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	3 cut(s)	232, 250, 454
Hpy188I	TCNGA	3 cut(s)	138, 189, 564
Hpy188III	TCNNGA	3 cut(s)	146, 307, 533
Hpy8I	GTNNAC	3 cut(s)	232, 250, 454
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	275, 342
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	3 cut(s)	29, 252, 381
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	154, 219, 266
HpySE526I	ACGT	3 cut(s)	29, 252, 381
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	6 cut(s)	38, 239, 369, 380, 416, 462
KspAI	GTTAAC	2 cut(s)	232, 250
LpnPI	CCDG	6 cut(s)	25, 39, 300, 323, 459, 495
MaeI	CTAG	2 cut(s)	110, 441
MaeII	ACGT	3 cut(s)	29, 252, 381
MaeIII	GTNAC	2 cut(s)	30, 295
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	4 cut(s)	23, 162, 515, 528
MnlI	CCTC	5 cut(s)	126, 214, 355, 393, 531
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	7 cut(s)	161, 179, 231, 243, 249, 486, 500
MspI	CCGG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	469
NcoI	CCATGG	1 cut(s)	365
NlaIII	CATG	6 cut(s)	38, 239, 369, 380, 416, 462
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	295
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	81
Psp1406I	AACGTT	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	14, 284
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	7 cut(s)	161, 179, 231, 243, 249, 486, 500
Sau96I	GGNCC	2 cut(s)	14, 284
SduI	GDGCHC	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	14, 284
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	4 cut(s)	23, 162, 515, 528
SspMI	CTAG	2 cut(s)	110, 441
StyI	CCWWGG	2 cut(s)	365, 440
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	3 cut(s)	32, 255, 384
TaqI	TCGA	1 cut(s)	384
TasI	AATT	4 cut(s)	23, 162, 515, 528
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	7 cut(s)	161, 179, 231, 243, 249, 486, 500
Tru9I	TTAA	7 cut(s)	161, 179, 231, 243, 249, 486, 500
TscAI	CASTG	2 cut(s)	103, 304
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	17, 155
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	103, 304
VpaK11BI	GGWCC	2 cut(s)	14, 284
XapI	RAATTY	2 cut(s)	23, 528
XmaJI	CCTAGG	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	2 cut(s)	110, 441
ZraI	GACGTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.