Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

766354 .. 767617

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCATCCGCATCTTCTTGGGGTATGGAGTCGTTTCTCTCAATTCTCGGATGAAAATACAGGATTAATTCAACCTCCAGTGTCTGAAGGAGGAGATCGAAGTGAACATGATTGTCAAGAGAATATTTTGCCAATTGAAAACGCAAAATTTGAATCTACCGTCTCAATTTCTGAGGCTATAGAATCTCTAGTCTATGACGATAATTTGGGATTTATTGCCTCATCAGCACCACCAATTGGCTCACTTTTTCCAATAACTCTGCCTCCGGTACCTTCCCCGACACTAGCTTTTGAAATATTGTCAAGTTCAATGCATAACAAGGTACCAAGCGGTTTCCCCTCTGTAGCCACACTTCTAGGTCATTTTTCACAACTGCTACCACCCATCGAATCAGTGAGCTTGTTTGGATTTGATAAGAAGGTACGTGACAAAGGTGGTGGCCACACTCTCTTAACAGATGAATTTTCTATCCCGAATAGAAAGTTTGCAGGGAATATGAGGCTACTTTGGGTTGATTTTCGTGTACTGAAAGCATTTGTTGTAGAAAACTCCAATGATCCTGACGCAGGTGTCAATGATGTGCTGAATGAGGTTCTCCGTTTCTTGAACAAGCGTCCTGAGAGTCGTGCACATGTTCAATCTCCTAGCAGCCAACCAATTGTAGCTGAATCTGAGGAGCGAAGTAAAGAATTGATTCATCACCGGGTAGATAAGGAAGTAGAGGTTGAGCTATTTCTAGCAGCAGGATTCAGTGCTAGTGAGGGAGAAGGAATCAATTCTCCATGGGATGAAGAACATATTCCACAAGAAATTCTGATTGCTACAAATCCTGTGGAGTGGGGTGTGGGTAATATTGTGAGGATTTTTCACAGTATCATGGAGGAGGATGTTTCTCTCACCATAATTGCTCTGGCTGGGTTGAACTTGTCGACTGTCAGTAATGATGAAGATTATGGTGACCGCAGCAACTATCCTATTCTATATGTTGTTGTAGTTGCAGCAGCTGCAAGAAGCACACTGTGTCCGCTTTCCTTGCAAATCCTTCTTGAAGACATATACATGATGCAGCAGCTCACACTTCTTCATTTGGTGGTGATTATGAAGGAAGAAGCGAATCTGCTGATAAAAGTTCTAAAAGCCGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

382

Amino Acids

42.07

Weight (kDa)

4.77

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
AasI	GACNNNNNNGTC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	557
Acc65I	GGTACC	2 cut(s)	268, 322
AccB1I	GGYRCC	2 cut(s)	268, 322
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	929
AciI	CCGC	4 cut(s)	8, 330, 961, 1025
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	439
AcsI	RAATTY	3 cut(s)	146, 461, 810
AcuI	CTGAAG	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	1020
AfaI	GTAC	4 cut(s)	270, 324, 423, 525
AfiI	CCNNNNNNNGG	2 cut(s)	236, 566
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	9 cut(s)	71, 137, 152, 293, 309, 607, 638, 922, 1049
AluBI	AGCT	6 cut(s)	287, 399, 665, 730, 1004, 1072
AluI	AGCT	6 cut(s)	287, 399, 665, 730, 1004, 1072
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	166
Alw44I	GTGCAC	1 cut(s)	627
AlwI	GGATC	1 cut(s)	551
AlwNI	CAGNNNCTG	2 cut(s)	83, 1004
AoxI	GGCC	1 cut(s)	439
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	8 cut(s)	648, 740, 963, 998, 1001, 1004, 1066, 1069
ApoI	RAATTY	3 cut(s)	146, 461, 810
AseI	ATTAAT	1 cut(s)	65
Asp700I	GAANNNNTTC	3 cut(s)	693, 775, 798
Asp718I	GGTACC	2 cut(s)	268, 322
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	4 cut(s)	692, 889, 968, 1105
BaeGI	GKGCMC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	441
BanI	GGYRCC	2 cut(s)	268, 322
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbsI	GAAGAC	1 cut(s)	1056
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	8 cut(s)	660, 752, 975, 991, 1010, 1013, 1078, 1081
BccI	CCATC	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	6 cut(s)	188, 284, 356, 645, 737, 756
BfmI	CTRYAG	2 cut(s)	177, 342
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	8 cut(s)	649, 741, 964, 999, 1002, 1005, 1067, 1070
BlsI	GCNGC	8 cut(s)	650, 742, 965, 1000, 1003, 1006, 1068, 1071
Bme1390I	CCNGG	1 cut(s)	704
BmiI	GGNNCC	2 cut(s)	270, 324
BmrFI	CCNGG	1 cut(s)	704
BmsI	GCATC	3 cut(s)	13, 19, 1053
BpiI	GAAGAC	1 cut(s)	1056
BpmI	CTGGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	782
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 566
Bse1I	ACTGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	782
BseGI	GGATG	4 cut(s)	4, 55, 793, 892
BseLI	CCNNNNNNNGG	2 cut(s)	236, 566
BseMII	CTCAG	3 cut(s)	162, 609, 663
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	3 cut(s)	105, 689, 896
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	8 cut(s)	660, 752, 975, 991, 1010, 1013, 1078, 1081
BseYI	CCCAGC	1 cut(s)	914
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	2 cut(s)	268, 322
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	3 cut(s)	266, 703, 1140
BslI	CCNNNNNNNGG	2 cut(s)	236, 566
BsmAI	GTCTC	1 cut(s)	166
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	2 cut(s)	94, 556
Bsp19I	CCATGG	1 cut(s)	782
BspACI	CCGC	4 cut(s)	8, 330, 961, 1025
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	163, 610, 664
BspLI	GGNNCC	2 cut(s)	270, 324
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	551
BspT107I	GGYRCC	2 cut(s)	268, 322
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	782
BssMI	GATC	2 cut(s)	94, 556
BssT1I	CCWWGG	1 cut(s)	782
Bst4CI	ACNGT	4 cut(s)	160, 872, 934, 1020
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstBAI	YACGTR	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	171, 618, 672
BstDSI	CCRYGG	1 cut(s)	782
BstEII	GGTNACC	1 cut(s)	956
BstENI	CCTNNNNNAGG	1 cut(s)	564
BstF5I	GGATG	4 cut(s)	4, 55, 793, 892
BstKTI	GATC	2 cut(s)	97, 559
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	94, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 1004, 1033
BstNSI	RCATGY	1 cut(s)	635
BstPI	GGTNACC	1 cut(s)	956
BstSCI	CCNGG	1 cut(s)	702
BstSFI	CTRYAG	2 cut(s)	177, 342
BstSLI	GKGCMC	1 cut(s)	631
BstV1I	GCAGC	8 cut(s)	660, 752, 975, 991, 1010, 1013, 1078, 1081
BstV2I	GAAGAC	1 cut(s)	1056
BsuRI	GGCC	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	782
BtsCI	GGATG	4 cut(s)	4, 55, 793, 892
BtsIMutI	CAGTG	4 cut(s)	84, 399, 757, 1016
BveI	ACCTGC	1 cut(s)	557
CaiI	CAGNNNCTG	2 cut(s)	83, 1004
CseI	GACGC	2 cut(s)	572, 602
Csp6I	GTAC	4 cut(s)	269, 323, 422, 524
CspCI	CAANNNNNGTGG	4 cut(s)	418, 453, 813, 848
CviAII	CATG	5 cut(s)	107, 632, 783, 877, 1060
CviQI	GTAC	4 cut(s)	269, 323, 422, 524
DdeI	CTNAG	3 cut(s)	171, 618, 672
DpnI	GATC	2 cut(s)	96, 558
DpnII	GATC	2 cut(s)	94, 556
DraIII	CACNNNGTG	1 cut(s)	1020
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
EaeI	YGGCCR	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	782
Eco57I	CTGAAG	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	956
EcoNI	CCTNNNNNAGG	1 cut(s)	564
EcoO65I	GGTNACC	1 cut(s)	956
EcoT14I	CCWWGG	1 cut(s)	782
EcoT22I	ATGCAT	2 cut(s)	6, 315
ErhI	CCWWGG	1 cut(s)	782
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	5 cut(s)	110, 635, 786, 880, 1063
FatI	CATG	5 cut(s)	106, 631, 782, 876, 1059
FblI	GTMKAC	1 cut(s)	929
Fnu4HI	GCNGC	8 cut(s)	649, 741, 964, 999, 1002, 1005, 1067, 1070
FokI	GGATG	3 cut(s)	62, 800, 899
Fsp4HI	GCNGC	8 cut(s)	649, 741, 964, 999, 1002, 1005, 1067, 1070
FspBI	CTAG	6 cut(s)	188, 284, 356, 645, 737, 756
GluI	GCNGC	8 cut(s)	649, 741, 964, 999, 1002, 1005, 1067, 1070
GsaI	CCCAGC	1 cut(s)	918
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	3 cut(s)	266, 703, 1140
HgaI	GACGC	2 cut(s)	572, 602
Hin1II	CATG	5 cut(s)	110, 635, 786, 880, 1063
HincII	GTYRAC	1 cut(s)	930
HindII	GTYRAC	1 cut(s)	930
HpaII	CCGG	3 cut(s)	266, 703, 1140
HphI	GGTGA	4 cut(s)	692, 889, 968, 1105
Hpy166II	GTNNAC	4 cut(s)	104, 524, 629, 930
Hpy188I	TCNGA	5 cut(s)	49, 85, 172, 673, 816
Hpy188III	TCNNGA	6 cut(s)	116, 472, 560, 604, 617, 1046
Hpy8I	GTNNAC	4 cut(s)	104, 524, 629, 930
HpyAV	CCTTC	6 cut(s)	80, 282, 412, 761, 1052, 1096
HpyCH4III	ACNGT	4 cut(s)	160, 872, 934, 1020
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	8 cut(s)	4, 313, 488, 629, 998, 1007, 1036, 1066
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 1004, 1033
HpyF3I	CTNAG	3 cut(s)	171, 618, 672
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	5 cut(s)	110, 635, 786, 880, 1063
KpnI	GGTACC	2 cut(s)	272, 326
Kzo9I	GATC	2 cut(s)	94, 556
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	8 cut(s)	660, 752, 975, 991, 1010, 1013, 1078, 1081
LweI	GCATC	3 cut(s)	13, 19, 1053
MaeI	CTAG	6 cut(s)	188, 284, 356, 645, 737, 756
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	425, 956
MalI	GATC	2 cut(s)	96, 558
MboI	GATC	2 cut(s)	94, 556
MboII	GAAGA	6 cut(s)	5, 803, 959, 1061, 1073, 1118
MfeI	CAATTG	3 cut(s)	132, 234, 657
MhlI	GDGCHC	1 cut(s)	631
MlsI	TGGCCA	1 cut(s)	441
MluNI	TGGCCA	1 cut(s)	441
MlyI	GAGTC	2 cut(s)	37, 631
Mox20I	TGGCCA	1 cut(s)	441
Mph1103I	ATGCAT	2 cut(s)	6, 315
MroXI	GAANNNNTTC	3 cut(s)	693, 775, 798
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	2 cut(s)	65, 452
MslI	CAYNNNNRTG	1 cut(s)	1058
Msp20I	TGGCCA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	1004
MspI	CCGG	3 cut(s)	266, 703, 1140
MspR9I	CCNGG	1 cut(s)	704
MunI	CAATTG	3 cut(s)	132, 234, 657
MwoI	GCNNNNNNNGC	3 cut(s)	224, 1004, 1033
NciI	CCSGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	782
NdeII	GATC	2 cut(s)	94, 556
NlaIII	CATG	5 cut(s)	110, 635, 786, 880, 1063
NlaIV	GGNNCC	2 cut(s)	270, 324
NmuCI	GTSAC	2 cut(s)	425, 956
NsiI	ATGCAT	2 cut(s)	6, 315
NspI	RCATGY	1 cut(s)	635
PaqCI	CACCTGC	1 cut(s)	557
PciI	ACATGT	1 cut(s)	631
PdmI	GAANNNNTTC	3 cut(s)	693, 775, 798
PfeI	GAWTC	8 cut(s)	152, 182, 389, 668, 694, 747, 771, 1114
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	8 cut(s)	650, 742, 965, 1000, 1003, 1006, 1068, 1071
PleI	GAGTC	2 cut(s)	36, 630
PpsI	GAGTC	2 cut(s)	36, 630
Ppu21I	YACGTR	1 cut(s)	425
PscI	ACATGT	1 cut(s)	631
PshBI	ATTAAT	1 cut(s)	65
PspEI	GGTNACC	1 cut(s)	956
PspFI	CCCAGC	1 cut(s)	914
PspN4I	GGNNCC	2 cut(s)	270, 324
PstNI	CAGNNNCTG	2 cut(s)	83, 1004
PvuII	CAGCTG	1 cut(s)	1004
RsaI	GTAC	4 cut(s)	270, 324, 423, 525
RsaNI	GTAC	4 cut(s)	269, 323, 422, 524
RseI	CAYNNNNRTG	1 cut(s)	1058
SalI	GTCGAC	1 cut(s)	928
SaqAI	TTAA	2 cut(s)	65, 452
SatI	GCNGC	8 cut(s)	649, 741, 964, 999, 1002, 1005, 1067, 1070
Sau3AI	GATC	2 cut(s)	94, 556
SchI	GAGTC	2 cut(s)	37, 631
ScrFI	CCNGG	1 cut(s)	704
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	3 cut(s)	13, 19, 1053
SfcI	CTRYAG	2 cut(s)	177, 342
SmiMI	CAYNNNNRTG	1 cut(s)	1058
SsiI	CCGC	4 cut(s)	8, 330, 961, 1025
SspI	AATATT	3 cut(s)	124, 297, 853
SspMI	CTAG	6 cut(s)	188, 284, 356, 645, 737, 756
StyD4I	CCNGG	1 cut(s)	702
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	4 cut(s)	160, 872, 934, 1020
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	97, 387, 929
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	8 cut(s)	152, 182, 389, 668, 694, 747, 771, 1114
Tru1I	TTAA	2 cut(s)	65, 452
Tru9I	TTAA	2 cut(s)	65, 452
TscAI	CASTG	4 cut(s)	84, 399, 757, 1023
TseFI	GTSAC	2 cut(s)	425, 956
TseI	GCWGC	8 cut(s)	648, 740, 963, 998, 1001, 1004, 1066, 1069
Tsp45I	GTSAC	2 cut(s)	425, 956
TspDTI	ATGAA	7 cut(s)	66, 474, 686, 804, 960, 1073, 1115
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	4 cut(s)	84, 399, 757, 1023
Van91I	CCANNNNNTGG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	627
VspI	ATTAAT	1 cut(s)	65
XagI	CCTNNNNNAGG	1 cut(s)	564
XapI	RAATTY	3 cut(s)	146, 461, 810
XceI	RCATGY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	907
XmiI	GTMKAC	1 cut(s)	929
XmnI	GAANNNNTTC	3 cut(s)	693, 775, 798
XspI	CTAG	6 cut(s)	188, 284, 356, 645, 737, 756
Zsp2I	ATGCAT	2 cut(s)	6, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.