Rh3BG368800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000779
Physical Location & Seq
Forward (+)
46123160 .. 46138471
15312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG368800.1

Sequence Viewer

Length: 567 bp
ATGTCTAATCAACCTAAAGACAATATTCTTACTGGAGATACTGAACTACTTGAAGTGTGTACAATTTTTATCAGTTCATTGGTGCTAGTTGGAACTCATGATCAACTGTTCTCATATTACAAGTCAAGGATCATGAAGTTTCTCAGGGAATTGGCTGAAGTCCTTGACATTAATGGTCAAGTGAAGAATGTGGATTATCAAGTGAACCTACCACAAGAGAAAATTTACTTAAGTTGCATGGTTGACTTTCTACTGGTCTTGACATCATCTTTTGGTAACTTAAACTTGCAGTTGAATGCTAAATGGGTTAAAACTTCACAGCATAGTCCTACCTTGTATAGCATTGCAGAAATACATGTGAAGAATCTCAATGGTCCAGCGACAAATACTTACATTACTTTGTGTTTGATGAAGATTTATGAAGGAAGCTGCATTAATGGATCTGTCACAAAAATAAAAGAGAAGCAACTCAAAGCTATGGGAGAAGGAACATCAAGTGGAGCAGCTCCAAACAAGAGGCAGAGAAATGAGGTTTGTGTGGTTGGAACTGCTTATGCACATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.9

Weight (kDa)

8.22

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 137, 448
AcsI RAATTY 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 61
AflII CTTAAG 1 cut(s) 229
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 2 cut(s) 53, 295
AluBI AGCT 3 cut(s) 429, 476, 506
AluI AGCT 3 cut(s) 429, 476, 506
AlwI GGATC 2 cut(s) 137, 448
ApeKI GCWGC 2 cut(s) 429, 503
ApoI RAATTY 1 cut(s) 222
AseI ATTAAT 2 cut(s) 171, 435
AspS9I GGNCC 1 cut(s) 374
AvaII GGWCC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 416, 515
BclI TGATCA 1 cut(s) 100
BfaI CTAG 2 cut(s) 86, 565
BfrI CTTAAG 1 cut(s) 229
BisI GCNGC 2 cut(s) 430, 504
BlsI GCNGC 2 cut(s) 431, 505
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 37, 258
Bse3DI GCAATG 1 cut(s) 342
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 37, 258
BseXI GCAGC 2 cut(s) 416, 515
BsmI GAATGC 1 cut(s) 301
Bsp1407I TGTACA 1 cut(s) 59
Bsp143I GATC 3 cut(s) 100, 129, 440
BspCNI CTCAG 1 cut(s) 156
BspHI TCATGA 2 cut(s) 97, 132
BspPI GGATC 2 cut(s) 137, 448
BspTI CTTAAG 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 59
BsrI ACTGG 2 cut(s) 37, 258
BssMI GATC 3 cut(s) 100, 129, 440
Bst4CI ACNGT 1 cut(s) 108
BstAFI CTTAAG 1 cut(s) 229
BstAUI TGTACA 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 143
BstKTI GATC 3 cut(s) 103, 132, 443
BstMBI GATC 3 cut(s) 100, 129, 440
BstNSI RCATGY 2 cut(s) 359, 563
BstV1I GCAGC 2 cut(s) 416, 515
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
CciI TCATGA 2 cut(s) 97, 132
Cfr13I GGNCC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 60
CviAII CATG 5 cut(s) 98, 133, 238, 356, 560
CviJI RGCY 4 cut(s) 155, 429, 476, 506
CviKI_1 RGCY 4 cut(s) 155, 429, 476, 506
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 143
DpnI GATC 3 cut(s) 102, 131, 442
DpnII GATC 3 cut(s) 100, 129, 440
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 177
FaeI CATG 5 cut(s) 101, 136, 241, 359, 563
FatI CATG 5 cut(s) 97, 132, 237, 355, 559
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 430, 504
Fsp4HI GCNGC 2 cut(s) 430, 504
FspBI CTAG 2 cut(s) 86, 565
GluI GCNGC 2 cut(s) 430, 504
GsuI CTGGAG 1 cut(s) 54
Hin1II CATG 5 cut(s) 101, 136, 241, 359, 563
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 364
Hpy166II GTNNAC 3 cut(s) 60, 205, 244
Hpy188III TCNNGA 3 cut(s) 98, 133, 259
Hpy8I GTNNAC 3 cut(s) 60, 205, 244
HpyAV CCTTC 2 cut(s) 416, 479
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 237, 289, 347, 432, 557
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 5 cut(s) 101, 136, 241, 359, 563
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 100, 129, 440
LmnI GCTCC 2 cut(s) 500, 511
LpnPI CCDG 4 cut(s) 18, 130, 239, 390
Lsp1109I GCAGC 2 cut(s) 416, 515
MaeI CTAG 2 cut(s) 86, 565
MaeIII GTNAC 2 cut(s) 275, 445
MalI GATC 3 cut(s) 102, 131, 442
MboI GATC 3 cut(s) 100, 129, 440
MboII GAAGA 3 cut(s) 196, 373, 424
MflI RGATCY 1 cut(s) 440
MluCI AATT 3 cut(s) 63, 149, 222
MmeI TCCRAC 2 cut(s) 70, 523
MnlI CCTC 2 cut(s) 510, 523
MseI TTAA 5 cut(s) 171, 230, 281, 309, 435
MspCI CTTAAG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 301
NdeII GATC 3 cut(s) 100, 129, 440
NlaIII CATG 5 cut(s) 101, 136, 241, 359, 563
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 2 cut(s) 359, 563
PagI TCATGA 2 cut(s) 97, 132
PciI ACATGT 1 cut(s) 355
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 364
PkrI GCNGC 2 cut(s) 431, 505
PscI ACATGT 1 cut(s) 355
PshBI ATTAAT 2 cut(s) 171, 435
PspPI GGNCC 1 cut(s) 374
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 5 cut(s) 171, 230, 281, 309, 435
SatI GCNGC 2 cut(s) 430, 504
Sau3AI GATC 3 cut(s) 100, 129, 440
Sau96I GGNCC 1 cut(s) 374
SetI ASST 7 cut(s) 16, 210, 335, 431, 478, 508, 534
SinI GGWCC 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 3 cut(s) 63, 149, 222
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 86, 565
TaaI ACNGT 1 cut(s) 108
TasI AATT 3 cut(s) 63, 149, 222
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 5 cut(s) 171, 230, 281, 309, 435
Tru9I TTAA 5 cut(s) 171, 230, 281, 309, 435
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 2 cut(s) 429, 503
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 4 cut(s) 66, 149, 425, 435
Vha464I CTTAAG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 2 cut(s) 171, 435
XapI RAATTY 1 cut(s) 222
XceI RCATGY 2 cut(s) 359, 563
XspI CTAG 2 cut(s) 86, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.