Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Reverse (-)

32163369 .. 32165858

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG286600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGCCGCTTCAAATTACTTACAGTTACTGGGATGGAGCAGGGCATAGGCGGACTATCCAGGCAAGTAAAGCATGCTCAAGTACGAAAGGGGGATAAAATAGGAGATTTTCTTCGCTCTGTTCAACAGCAACTAGCACCTGAGTTTCGAGAAGTTCGAACTACCTCAGTGGAGAATTTGCTATATGTAAAAGAAGATCTTATCATTCCGCATCAGCACAGTTTCTATGAGCTAATTGTAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTTTCATTTTGATGTGCATGAGGATGTGCGAACAATTGCTGATGCTACAATAGAGAAGGATGAGTCTCATGCTGGGAAGGTCGTTGAGAGGCATTGGTATGACAAGAATAAGCATATTTTCCCTGCTTCTAGATGGGAGATATATGATCCGACGAAGAAATGGGAGCGTTACACCATCCATGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010099 GO:0010114 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0032870 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035556 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071495 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XAP5

Protein Analysis

152

Amino Acids

17.75

Weight (kDa)

8.78

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XAP5	PF04921	24 - 148	1.7e-46	XAP5, circadian clock regulator C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	7, 51, 209, 266
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	450
AgsI	TTSAA	2 cut(s)	13, 125
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	263
BccI	CCATC	3 cut(s)	28, 396, 452
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	2 cut(s)	134, 399
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	220, 301
BmuI	ACTGGG	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	4 cut(s)	39, 298, 334, 444
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	132, 180
BseNI	ACTGG	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmAI	GTCTC	1 cut(s)	339
Bsp119I	TTCGAA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	196, 415
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	4 cut(s)	7, 51, 209, 266
BspCNI	CTCAG	2 cut(s)	133, 179
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	196, 415
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	25, 221
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	141, 166
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	4 cut(s)	39, 298, 334, 444
BstKTI	GATC	2 cut(s)	199, 418
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	2 cut(s)	196, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	4 cut(s)	39, 298, 334, 444
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	4 cut(s)	74, 287, 338, 449
CviJI	RGCY	2 cut(s)	6, 232
CviKI_1	RGCY	2 cut(s)	6, 232
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	141, 166
DpnI	GATC	2 cut(s)	198, 417
DpnII	GATC	2 cut(s)	196, 415
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	4 cut(s)	77, 290, 341, 452
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	4 cut(s)	73, 286, 337, 448
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	4 cut(s)	46, 305, 341, 431
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	2 cut(s)	134, 399
GluI	GCNGC	1 cut(s)	7
GsaI	CCCAGC	1 cut(s)	345
Hin1II	CATG	4 cut(s)	77, 290, 341, 452
HinfI	GANTC	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	241, 263
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	2 cut(s)	149, 399
Hpy8I	GTNNAC	2 cut(s)	241, 263
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	319, 340
HpyCH4III	ACNGT	2 cut(s)	25, 221
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	141, 166
Hsp92II	CATG	4 cut(s)	77, 290, 341, 452
Kzo9I	GATC	2 cut(s)	196, 415
LmnI	GCTCC	2 cut(s)	37, 433
LpnPI	CCDG	7 cut(s)	15, 26, 46, 73, 153, 327, 405
LweI	GCATC	2 cut(s)	220, 301
MaeI	CTAG	2 cut(s)	134, 399
MaeIII	GTNAC	2 cut(s)	25, 437
MalI	GATC	2 cut(s)	198, 417
MboI	GATC	2 cut(s)	196, 415
MboII	GAAGA	3 cut(s)	104, 206, 436
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	196
MluCI	AATT	4 cut(s)	14, 175, 234, 303
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	3 cut(s)	175, 283, 351
MslI	CAYNNNNRTG	3 cut(s)	279, 291, 366
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	2 cut(s)	196, 415
NlaIII	CATG	4 cut(s)	77, 290, 341, 452
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	3 cut(s)	279, 291, 366
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	2 cut(s)	196, 415
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	4 cut(s)	142, 167, 234, 351
SfaNI	GCATC	2 cut(s)	220, 301
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	3 cut(s)	279, 291, 366
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	4 cut(s)	14, 175, 234, 303
SsiI	CCGC	4 cut(s)	7, 51, 209, 266
SspMI	CTAG	2 cut(s)	134, 399
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	25, 221
TaqI	TCGA	2 cut(s)	148, 157
TasI	AATT	4 cut(s)	14, 175, 234, 303
TauI	GCSGC	1 cut(s)	9
TscAI	CASTG	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	175
XbaI	TCTAGA	1 cut(s)	398
XceI	RCATGY	1 cut(s)	77
XspI	CTAG	2 cut(s)	134, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.