Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000870.1

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

303267 .. 303773

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000870.1_g000072.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggttactacttttctcctttctgtggcatcaggtatgtgtgttactgtccatggtgtgatgataaccatacataaagcacacattgacgattttgctaagaaagctaagaagaagcaacttggtattgttttcggattatatgaggataagctatttttaacaatattgctgcagcatggaatttttaaggtgggaggagaatttatagatgatggaaccttcattgctcagttgataaatttagagcaccaaacatgccccaaaagtggacagaaaattattcacatggcccttccacctaactatgcactgaagagtctattgcatcaatggtgtgaggaaaacaagtgcctggtctccctctcacgtgcttttgaaattacatttggtgggacgaaggtgcatgtctctcaacttgaatggaagaaaactatccataacaatgttgctgaagttattgcagacattgatggcaaaatctatgatgtctcagttattatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009610 GO:0009617 GO:0009620 GO:0009877 GO:0009987 GO:0010033 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0036377 GO:0042221 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

168

Amino Acids

18.76

Weight (kDa)

7.74

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	183, 203, 241
AcuI	CTGAAG	2 cut(s)	335, 474
AcvI	CACGTG	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	25, 269
AgsI	TTSAA	2 cut(s)	380, 422
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AluBI	AGCT	2 cut(s)	107, 154
AluI	AGCT	2 cut(s)	107, 154
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	3 cut(s)	364, 415, 496
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	172, 175
ApoI	RAATTY	3 cut(s)	183, 203, 241
AspS9I	GGNCC	1 cut(s)	292
BbrPI	CACGTG	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	159, 187
BccI	CCATC	2 cut(s)	209, 467
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	3 cut(s)	364, 415, 496
BfmI	CTRYAG	1 cut(s)	173
BisI	GCNGC	2 cut(s)	173, 176
BlsI	GCNGC	2 cut(s)	174, 177
Bme1390I	CCNGG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	38, 337
BsaAI	YACGTR	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 269
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	25, 269
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	245, 507
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	159, 187
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	25, 269
BsmAI	GTCTC	3 cut(s)	364, 415, 496
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	293
Bso31I	GGTCTC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	52
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	244, 506
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	371
BstDEI	CTNAG	4 cut(s)	99, 108, 231, 493
BstDSI	CCRYGG	1 cut(s)	52
BstMAI	GTCTC	3 cut(s)	364, 415, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	2 cut(s)	261, 410
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	159, 187
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	292
CviAII	CATG	5 cut(s)	53, 179, 258, 289, 407
CviJI	RGCY	3 cut(s)	107, 154, 293
CviKI_1	RGCY	3 cut(s)	107, 154, 293
DdeI	CTNAG	4 cut(s)	99, 108, 231, 493
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	364
Eco57I	CTGAAG	2 cut(s)	335, 474
Eco72I	CACGTG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	5 cut(s)	56, 182, 261, 292, 410
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	5 cut(s)	52, 178, 257, 288, 406
Fnu4HI	GCNGC	2 cut(s)	173, 176
Fsp4HI	GCNGC	2 cut(s)	173, 176
GluI	GCNGC	2 cut(s)	173, 176
HaeIII	GGCC	1 cut(s)	293
Hin1II	CATG	5 cut(s)	56, 182, 261, 292, 410
HinfI	GANTC	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	232, 305, 394
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	175, 311, 328, 406, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	4 cut(s)	99, 108, 231, 493
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	56, 182, 261, 292, 410
LpnPI	CCDG	3 cut(s)	18, 341, 368
Lsp1109I	GCAGC	2 cut(s)	159, 187
LweI	GCATC	2 cut(s)	38, 337
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	4, 43
MboII	GAAGA	3 cut(s)	124, 328, 439
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	5 cut(s)	183, 203, 241, 279, 381
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	139, 191, 334, 374
MseI	TTAA	2 cut(s)	161, 189
MslI	CAYNNNNRTG	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	52
NlaIII	CATG	5 cut(s)	56, 182, 261, 292, 410
NlaIV	GGNNCC	1 cut(s)	220
NspI	RCATGY	2 cut(s)	261, 410
PkrI	GCNGC	2 cut(s)	174, 177
PleI	GAGTC	1 cut(s)	327
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	327
Ppu21I	YACGTR	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	354
PspCI	CACGTG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	161, 189
SatI	GCNGC	2 cut(s)	173, 176
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	37, 109, 156, 195, 224, 304, 373, 405
SfaNI	GCATC	2 cut(s)	38, 337
SfcI	CTRYAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	5 cut(s)	183, 203, 241, 279, 381
SspI	AATATT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	373
TasI	AATT	5 cut(s)	183, 203, 241, 279, 381
Tru1I	TTAA	2 cut(s)	161, 189
Tru9I	TTAA	2 cut(s)	161, 189
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	2 cut(s)	172, 175
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	318
XapI	RAATTY	3 cut(s)	183, 203, 241
XceI	RCATGY	2 cut(s)	261, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.