Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

52386242 .. 52386580

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGGTATAAGCCTCAAGTTGATTCACTTGCTGCAGATTCCATGAACTTAGACAAGAGGACAGGTTTCCATTATTCACCGGTGAGATGCTTTGATTTGTATAAACTGCATTCATGGGTTGGAGGAGTGACTTACAAGGAAACAATGCGGGATGGTTATGAAATTTCAAAACTCCGGTTTGAGATTGTGGCTTTTTGCTTGAGCAACAGATTATTTCTTAAACTTGAGGTCAAGTTTCAATTGAAGAGGGGTGGTGTTGTTAGGACCCAATTCTATGATCTCCAAGCCCAAGTGTGTATCGAGGCCCATAATAGCTCTTTTGGTCGTGAAAGCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

112

Amino Acids

13.06

Weight (kDa)

9.24

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	3 - 51	1e-06	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	162
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	168, 239, 244
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	162
AsiGI	ACCGGT	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	264, 304
AsuHPI	GGTGA	2 cut(s)	69, 94
AvaII	GGWCC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	264, 304
BmiI	GGNNCC	1 cut(s)	266
BmsI	GCATC	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	220, 245
BsaWI	WCCGGW	2 cut(s)	79, 174
Bse118I	RCCGGY	1 cut(s)	79
BseGI	GGATG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	305
BshTI	ACCGGT	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	80, 175
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	266
BspMAI	CTGCAG	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssMI	GATC	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	264, 304
CspAI	ACCGGT	1 cut(s)	79
CviAII	CATG	2 cut(s)	43, 114
CviJI	RGCY	6 cut(s)	13, 191, 287, 305, 315, 333
CviKI_1	RGCY	6 cut(s)	13, 191, 287, 305, 315, 333
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	264
FaeI	CATG	2 cut(s)	46, 117
FaiI	YATR	8 cut(s)	9, 44, 102, 115, 159, 276, 309, 337
FatI	CATG	2 cut(s)	42, 113
FauI	CCCGC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	2 cut(s)	80, 175
Hin1II	CATG	2 cut(s)	46, 117
HinfI	GANTC	2 cut(s)	23, 38
HpaII	CCGG	2 cut(s)	80, 175
HphI	GGTGA	2 cut(s)	69, 94
Hpy188III	TCNNGA	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	35, 109
HpyF3I	CTNAG	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	46, 117
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	3 cut(s)	48, 93, 188
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	1 cut(s)	256
MfeI	CAATTG	1 cut(s)	239
MluCI	AATT	3 cut(s)	162, 239, 269
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	24, 51, 116, 220, 240, 295
MseI	TTAA	1 cut(s)	219
MspI	CCGG	2 cut(s)	80, 175
MunI	CAATTG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	109
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	46, 117
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	127
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	23, 38
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	264, 304
PspPPI	RGGWCCY	1 cut(s)	264
PstI	CTGCAG	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	2 cut(s)	264, 304
SetI	ASST	4 cut(s)	8, 67, 231, 317
SfaNI	GCATC	1 cut(s)	77
SfcI	CTRYAG	1 cut(s)	33
SgrAI	CRCCGGYG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	3 cut(s)	15, 199, 224
SmoI	CTYRAG	3 cut(s)	15, 199, 224
Sse9I	AATT	3 cut(s)	162, 239, 269
SsiI	CCGC	1 cut(s)	148
TaqI	TCGA	1 cut(s)	300
TasI	AATT	3 cut(s)	162, 239, 269
TfiI	GAWTC	2 cut(s)	23, 38
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	59, 102, 174
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.