Rroxscaffold_2G00094100

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000779
Physical Location & Seq
Reverse (-)
15432886 .. 15434087
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094100.1

Sequence Viewer

Length: 726 bp
ATGGAGACGTTGATGTTCTTGTGTGCAATTTCAGAATTTGGCACCTTGGCTACTCTAAATGCATGGTTGAATGGTAACTTTCTGTTTTTACCTCTTGAGAACAAAGTGGAGAAAATGAATTTGCTTCTTGCCGATAAGTTGGAGAAACTGGACAAAATTGTGAAAATGTTGCTTGTTGACAATTGGGAGAGATGGAAGTATTTAGTAATTGCTATGAATAAGAATGGTACTAAAGATTTACATGCGAATTTTCTTGAAAACCATTTGGAGCAATTTGTGAAGTGTTTGCGATATGTTATGTCTACTTGGGCTGCACTTTACACAATGCGAAGTTGGGATTCAAATTCTATTTACGACTTTGATGATGATCGTGTTATCTTTACAAGGTTCTCATACGGGGGTTTATCCGTACTTGTTGAAAGTGAGTACTCTTCTTGCTTGATGGGGCCAACTATTGCACGAGACATTGGTGTATATGGTTACGGACCTTCGGATCTGGTAGTTAAGCTTGCGTGTAAGAGGGCCAAAATCAACACAAAGCTTGGAGTATACACAAGAACCTCTAATTACAATGCCAACAATACCGATCAAACAAAGTTCACAAGTTGGTTGCATGTTGATCCGAGATTATATGAGCAGAAGCTATTTTTAACCATATTGCTGCAGCATGGAATATTTAAGGTGGGAGGAGAACTTATAGATGATGGAAACTTCATTGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

241

Amino Acids

27.76

Weight (kDa)

6.52

Isoelectric Point (pI)

20.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 2 cut(s) 302, 549
AclWI GGATC 2 cut(s) 501, 614
AcsI RAATTY 4 cut(s) 35, 118, 247, 343
AfaI GTAC 3 cut(s) 229, 411, 428
AgsI TTSAA 4 cut(s) 70, 257, 342, 419
AluBI AGCT 3 cut(s) 508, 541, 643
AluI AGCT 3 cut(s) 508, 541, 643
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 2 cut(s) 501, 614
AoxI GGCC 2 cut(s) 446, 522
ApeKI GCWGC 3 cut(s) 311, 661, 664
ApoI RAATTY 4 cut(s) 35, 118, 247, 343
AspS9I GGNCC 3 cut(s) 446, 485, 522
AvaII GGWCC 1 cut(s) 485
BanI GGYRCC 1 cut(s) 41
BauI CACGAG 1 cut(s) 459
BbvI GCAGC 3 cut(s) 298, 648, 676
BccI CCATC 3 cut(s) 186, 436, 698
BcoDI GTCTC 1 cut(s) 456
BfmI CTRYAG 1 cut(s) 662
BisI GCNGC 3 cut(s) 312, 662, 665
BlsI GCNGC 3 cut(s) 313, 663, 666
BmcAI AGTACT 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 3 cut(s) 446, 485, 522
BmiI GGNNCC 2 cut(s) 43, 447
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 366
BseMI GCAATG 1 cut(s) 714
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 702
BseXI GCAGC 3 cut(s) 298, 648, 676
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 2 cut(s) 448, 524
BshNI GGYRCC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 456
BsnI GGCC 2 cut(s) 448, 524
Bsp143I GATC 4 cut(s) 367, 493, 586, 619
BspANI GGCC 2 cut(s) 448, 524
BspLI GGNNCC 2 cut(s) 43, 447
BspMAI CTGCAG 1 cut(s) 666
BspPI GGATC 2 cut(s) 501, 614
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 4 cut(s) 367, 493, 586, 619
BssNAI GTATAC 1 cut(s) 550
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 45
Bst1107I GTATAC 1 cut(s) 550
Bst2BI CACGAG 1 cut(s) 459
Bst6I CTCTTC 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 510
BstKTI GATC 4 cut(s) 370, 496, 589, 622
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 4 cut(s) 367, 493, 586, 619
BstNSI RCATGY 2 cut(s) 245, 617
BstSFI CTRYAG 1 cut(s) 662
BstV1I GCAGC 3 cut(s) 298, 648, 676
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BstZ17I GTATAC 1 cut(s) 550
BsuRI GGCC 2 cut(s) 448, 524
BtsIMutI CAGTG 1 cut(s) 721
Cac8I GCNNGC 1 cut(s) 510
Cfr13I GGNCC 3 cut(s) 446, 485, 522
Csp6I GTAC 3 cut(s) 228, 410, 427
CviAII CATG 4 cut(s) 63, 242, 614, 668
CviJI RGCY 7 cut(s) 50, 311, 448, 508, 524, 541, 643
CviKI_1 RGCY 7 cut(s) 50, 311, 448, 508, 524, 541, 643
CviQI GTAC 3 cut(s) 228, 410, 427
DpnI GATC 4 cut(s) 369, 495, 588, 621
DpnII GATC 4 cut(s) 367, 493, 586, 619
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 4 cut(s) 66, 245, 617, 671
FatI CATG 4 cut(s) 62, 241, 613, 667
FblI GTMKAC 2 cut(s) 302, 549
Fnu4HI GCNGC 3 cut(s) 312, 662, 665
Fsp4HI GCNGC 3 cut(s) 312, 662, 665
GluI GCNGC 3 cut(s) 312, 662, 665
HaeIII GGCC 2 cut(s) 448, 524
Hin1II CATG 4 cut(s) 66, 245, 617, 671
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 2 cut(s) 506, 539
HinfI GANTC 1 cut(s) 338
Hpy166II GTNNAC 4 cut(s) 178, 303, 550, 600
Hpy188I TCNGA 3 cut(s) 34, 493, 624
Hpy188III TCNNGA 2 cut(s) 95, 254
Hpy8I GTNNAC 4 cut(s) 178, 303, 550, 600
HpyAV CCTTC 1 cut(s) 498
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 6 cut(s) 26, 62, 314, 458, 613, 664
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 4 cut(s) 66, 245, 617, 671
Kzo9I GATC 4 cut(s) 367, 493, 586, 619
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 2 cut(s) 134, 482
Lsp1109I GCAGC 3 cut(s) 298, 648, 676
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 74, 479
MalI GATC 4 cut(s) 369, 495, 588, 621
MboI GATC 4 cut(s) 367, 493, 586, 619
MboII GAAGA 1 cut(s) 423
MfeI CAATTG 1 cut(s) 181
MflI RGATCY 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 4 cut(s) 102, 513, 571, 680
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 3 cut(s) 504, 650, 678
MunI CAATTG 1 cut(s) 181
NdeII GATC 4 cut(s) 367, 493, 586, 619
NlaIII CATG 4 cut(s) 66, 245, 617, 671
NlaIV GGNNCC 2 cut(s) 43, 447
NsiI ATGCAT 1 cut(s) 64
NspI RCATGY 2 cut(s) 245, 617
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 3 cut(s) 313, 663, 666
PspN4I GGNNCC 2 cut(s) 43, 447
PspPI GGNCC 3 cut(s) 446, 485, 522
PstI CTGCAG 1 cut(s) 666
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 3 cut(s) 229, 411, 428
RsaNI GTAC 3 cut(s) 228, 410, 427
SaqAI TTAA 3 cut(s) 504, 650, 678
SatI GCNGC 3 cut(s) 312, 662, 665
Sau3AI GATC 4 cut(s) 367, 493, 586, 619
Sau96I GGNCC 3 cut(s) 446, 485, 522
ScaI AGTACT 1 cut(s) 428
SfcI CTRYAG 1 cut(s) 662
SinI GGWCC 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SspI AATATT 1 cut(s) 675
StyI CCWWGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 11
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 3 cut(s) 504, 650, 678
Tru9I TTAA 3 cut(s) 504, 650, 678
TseI GCWGC 3 cut(s) 311, 661, 664
TspDTI ATGAA 3 cut(s) 131, 230, 703
TspGWI ACGGA 2 cut(s) 397, 498
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 4 cut(s) 35, 118, 247, 343
XceI RCATGY 2 cut(s) 245, 617
XmiI GTMKAC 2 cut(s) 302, 549
ZrmI AGTACT 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.