Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Reverse (-)

71169500 .. 71173375

Gene Structure 3876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACGACCGGCTCCGTTCAAGTGCAAGCTATGGGTTGTTTGAGCACGATGGATGAATATGAAATTAAAGGCATTGAGGTTCCAATAAGTGTGAGCTTGGAGAATGGATTCGATCAACTAGGCCGCGATGTTGAATTGCAATCCGAGTATGACAAAATCAAGCTACCCACTCAATTGGTCCGGATGATAAAGAAAAAGATGGAAATTGTGATGGGAGTGGAGAGTCCGGAAACCGCAGCGAGAAAGGGACCCATAGAAGAAAACTTATACAAAGATGATAATGCTAGTGATTTTGAGAAGATTTTTGCTGGTATACCTGAAGTTAGTGTTTTTTATTGGAATGTCAATTTGATTGCAGCTTGTGTACGGTTTGGTGATAAAAAAGGTGGCCGTCAAATGTTTGATAACATCCTTTGCTCAAATGTGTTTTCATGGGATGCCATACTCTCGACTATTTCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

154

Amino Acids

17.24

Weight (kDa)

4.65

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	1 cut(s)	126
AccIII	TCCGGA	2 cut(s)	180, 226
AciI	CCGC	2 cut(s)	124, 234
AcoI	YGGCCR	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	20, 134
AluBI	AGCT	4 cut(s)	29, 96, 163, 359
AluI	AGCT	4 cut(s)	29, 96, 163, 359
Alw21I	GWGCWC	1 cut(s)	47
Aor13HI	TCCGGA	2 cut(s)	180, 226
AoxI	GGCC	2 cut(s)	121, 388
ApeKI	GCWGC	2 cut(s)	236, 356
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	178, 248
AsuHPI	GGTGA	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	178, 248
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	248, 368
BccI	CCATC	3 cut(s)	43, 193, 205
BceAI	ACGGC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	119, 285
BisI	GCNGC	3 cut(s)	124, 237, 357
BlsI	GCNGC	3 cut(s)	125, 238, 358
Bme18I	GGWCC	2 cut(s)	178, 248
BmgT120I	GGNCC	2 cut(s)	178, 248
BmiI	GGNNCC	4 cut(s)	13, 81, 249, 250
BmsI	GCATC	1 cut(s)	427
BsaWI	WCCGGW	2 cut(s)	180, 226
Bse118I	RCCGGY	1 cut(s)	8
BseAI	TCCGGA	2 cut(s)	180, 226
BseGI	GGATG	4 cut(s)	58, 189, 408, 442
BseXI	GCAGC	2 cut(s)	248, 368
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	123, 390
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	9, 181, 227
BslFI	GGGAC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	123, 390
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp13I	TCCGGA	2 cut(s)	180, 226
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	2 cut(s)	124, 234
BspANI	GGCC	2 cut(s)	123, 390
BspEI	TCCGGA	2 cut(s)	180, 226
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	4 cut(s)	13, 81, 249, 250
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	1 cut(s)	112
BssNAI	GTATAC	1 cut(s)	314
Bst1107I	GTATAC	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	58, 189, 408, 442
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	248, 368
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstZ17I	GTATAC	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	123, 390
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	4 cut(s)	58, 189, 408, 442
Cac8I	GCNNGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	178, 248
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	1 cut(s)	432
CviJI	RGCY	7 cut(s)	12, 29, 96, 123, 163, 359, 390
CviKI_1	RGCY	7 cut(s)	12, 29, 96, 123, 163, 359, 390
CviQI	GTAC	1 cut(s)	365
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	178, 248
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	248
FaeI	CATG	1 cut(s)	435
FaiI	YATR	8 cut(s)	32, 60, 150, 254, 268, 314, 433, 443
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	1 cut(s)	431
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	124, 237, 357
FokI	GGATG	4 cut(s)	65, 196, 395, 449
Fsp4HI	GCNGC	3 cut(s)	124, 237, 357
FspBI	CTAG	2 cut(s)	119, 285
GluI	GCNGC	3 cut(s)	124, 237, 357
HaeIII	GGCC	2 cut(s)	123, 390
HapII	CCGG	3 cut(s)	9, 181, 227
Hin1II	CATG	1 cut(s)	435
HinfI	GANTC	2 cut(s)	108, 223
HpaII	CCGG	3 cut(s)	9, 181, 227
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	314, 365
Hpy188I	TCNGA	2 cut(s)	145, 460
Hpy188III	TCNNGA	3 cut(s)	181, 227, 448
Hpy8I	GTNNAC	2 cut(s)	314, 365
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	25, 139, 356
Hsp92II	CATG	1 cut(s)	435
KflI	GGGWCCC	1 cut(s)	248
Kpn2I	TCCGGA	2 cut(s)	180, 226
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	5 cut(s)	22, 194, 240, 294, 330
Lsp1109I	GCAGC	2 cut(s)	248, 368
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	119, 285
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	2 cut(s)	269, 310
MfeI	CAATTG	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	5 cut(s)	63, 134, 173, 204, 346
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	1 cut(s)	70
MroI	TCCGGA	2 cut(s)	180, 226
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	66
MspI	CCGG	3 cut(s)	9, 181, 227
MunI	CAATTG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	126
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	4 cut(s)	13, 81, 249, 250
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	125, 238, 358
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PpuMI	RGGWCCY	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	248
PspN4I	GGNNCC	4 cut(s)	13, 81, 249, 250
PspPI	GGNCC	2 cut(s)	178, 248
PspPPI	RGGWCCY	1 cut(s)	248
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	3 cut(s)	124, 237, 357
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	2 cut(s)	178, 248
SchI	GAGTC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	7 cut(s)	31, 81, 98, 165, 319, 361, 388
SfaNI	GCATC	1 cut(s)	427
SinI	GGWCC	2 cut(s)	178, 248
Sse9I	AATT	5 cut(s)	63, 134, 173, 204, 346
SsiI	CCGC	2 cut(s)	124, 234
SspMI	CTAG	2 cut(s)	119, 285
TaaI	ACNGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	111, 449
TasI	AATT	5 cut(s)	63, 134, 173, 204, 346
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	2 cut(s)	236, 356
TspDTI	ATGAA	3 cut(s)	69, 75, 420
TspGWI	ACGGA	1 cut(s)	4
VpaK11BI	GGWCC	2 cut(s)	178, 248
XmiI	GTMKAC	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	2 cut(s)	119, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.