Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

51242959 .. 51243997

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTTTTGGTAGGAGAAGCATTTACAAGTTTAGAGTTGCTGCAAAATGAATCTCAGATTGATCAAACAGTTGCCAAGGCTATTGTTGCCAGGTTCTCATATGGGGGTCTATCCGAACTTGTTGCAAATAAAGCACACATTGACGAATTTGCTATGAAAGCTAAGAAGAAGCAACTTGGTATTGTTTTCGGATTATATGAGGAGAAGCTATTTTTAACCATATTGCTGCAGCATGGAATTTTTAAGGTGGGAGGAGAATTTATAGATGATGGAAACTTCATTGCTCAGTTAATAAATTCAGAGCACCAAACATGCCCCAAAAGTGGACAGAAAATTATTCACATGGGCCTTCTACCTAACTATGCACTAAAGAGTCTATTGCATCAATGGTGTGAGGAAAAGAAGTGCCTGGTCTCCCTCTCACGTGCTTTTGAAATTGCATTTGGTGGGAAGAAGGTGCATGTCTCTCAACTTGAAGGGAAGAAAACTGTCCGTAACAATGTTGCTGAAGTTATTGCAGACATTGATGGCAAAATCTATGATATCTCAGTTATTAATGGTTTTGTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009610 GO:0009617 GO:0009620 GO:0009877 GO:0009987 GO:0010033 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0036377 GO:0042221 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

190

Amino Acids

21.12

Weight (kDa)

7.05

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	146, 237, 257, 295
AcuI	CTGAAG	1 cut(s)	528
AcvI	CACGTG	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	434, 476
AjnI	CCWGG	2 cut(s)	89, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AluBI	AGCT	2 cut(s)	161, 208
AluI	AGCT	2 cut(s)	161, 208
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	2 cut(s)	418, 469
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	3 cut(s)	40, 226, 229
ApoI	RAATTY	4 cut(s)	146, 237, 257, 295
AseI	ATTAAT	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	346
BbrPI	CACGTG	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	27, 213, 241
BccI	CCATC	2 cut(s)	263, 521
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	2 cut(s)	91, 410
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	418, 469
BfaI	CTAG	1 cut(s)	571
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	3 cut(s)	41, 227, 230
BlsI	GCNGC	3 cut(s)	42, 228, 231
Bme1390I	CCNGG	2 cut(s)	91, 410
BmgT120I	GGNCC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	91, 410
BmsI	GCATC	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	91, 410
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	3 cut(s)	68, 299, 561
BseRI	GAGGAG	2 cut(s)	215, 267
BseXI	GCAGC	3 cut(s)	27, 213, 241
BshFI	GGCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	418, 469
BsnI	GGCC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	3 cut(s)	67, 298, 560
BspMAI	CTGCAG	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	91, 410
Bst4CI	ACNGT	2 cut(s)	70, 490
BstBAI	YACGTR	1 cut(s)	425
BstDEI	CTNAG	4 cut(s)	54, 162, 285, 547
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	418, 469
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 131, 158
BstNI	CCWGG	2 cut(s)	91, 410
BstNSI	RCATGY	2 cut(s)	315, 464
BstSCI	CCNGG	2 cut(s)	89, 408
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	27, 213, 241
BsuRI	GGCC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	346
CviAII	CATG	4 cut(s)	233, 312, 343, 461
CviJI	RGCY	4 cut(s)	80, 161, 208, 348
CviKI_1	RGCY	4 cut(s)	80, 161, 208, 348
DdeI	CTNAG	4 cut(s)	54, 162, 285, 547
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	528
Eco72I	CACGTG	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	89, 408
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	236, 315, 346, 464
FatI	CATG	4 cut(s)	232, 311, 342, 460
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	41, 227, 230
Fsp4HI	GCNGC	3 cut(s)	41, 227, 230
FspBI	CTAG	1 cut(s)	571
GluI	GCNGC	3 cut(s)	41, 227, 230
HaeIII	GGCC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	236, 315, 346, 464
HinfI	GANTC	2 cut(s)	50, 373
Hpy166II	GTNNAC	2 cut(s)	326, 568
Hpy188I	TCNGA	4 cut(s)	57, 115, 191, 301
Hpy8I	GTNNAC	2 cut(s)	326, 568
HpyAV	CCTTC	3 cut(s)	359, 448, 470
HpyCH4III	ACNGT	2 cut(s)	70, 490
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	8 cut(s)	43, 125, 229, 365, 382, 440, 460, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 131, 158
HpyF3I	CTNAG	4 cut(s)	54, 162, 285, 547
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	4 cut(s)	236, 315, 346, 464
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	76, 103, 395, 422
Lsp1109I	GCAGC	3 cut(s)	27, 213, 241
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	571
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	178, 463, 493
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	6 cut(s)	146, 237, 257, 295, 333, 435
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	4 cut(s)	193, 245, 388, 428
MseI	TTAA	4 cut(s)	215, 243, 290, 555
MspR9I	CCNGG	2 cut(s)	91, 410
MvaI	CCWGG	2 cut(s)	91, 410
MwoI	GCNNNNNNNGC	3 cut(s)	86, 131, 158
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	236, 315, 346, 464
NspI	RCATGY	2 cut(s)	315, 464
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	42, 228, 231
PleI	GAGTC	1 cut(s)	381
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	381
Ppu21I	YACGTR	1 cut(s)	425
PshBI	ATTAAT	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	89, 408
PspCI	CACGTG	1 cut(s)	425
PspGI	CCWGG	2 cut(s)	89, 408
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	215, 243, 290, 555
SatI	GCNGC	3 cut(s)	41, 227, 230
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	2 cut(s)	91, 410
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	7 cut(s)	95, 163, 210, 249, 358, 427, 459
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	227
Sse9I	AATT	6 cut(s)	146, 237, 257, 295, 333, 435
SspMI	CTAG	1 cut(s)	571
StyD4I	CCNGG	2 cut(s)	89, 408
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	70, 490
TaiI	ACGT	1 cut(s)	427
TasI	AATT	6 cut(s)	146, 237, 257, 295, 333, 435
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	4 cut(s)	215, 243, 290, 555
Tru9I	TTAA	4 cut(s)	215, 243, 290, 555
TseI	GCWGC	3 cut(s)	40, 226, 229
TspDTI	ATGAA	3 cut(s)	63, 170, 268
TspGWI	ACGGA	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	4 cut(s)	146, 237, 257, 295
XceI	RCATGY	2 cut(s)	315, 464
XspI	CTAG	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.