Rroxscaffold_1G00043450

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000779
Physical Location & Seq
Reverse (-)
61974643 .. 61975908
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043450.1

Sequence Viewer

Length: 774 bp
ATGTTTGATAACATCTTATGCTCAAAGGTGAGCTCATGGAATGTCATACTCTCTGGTTATGTCCGGAATGAAGAACACATGGAGACATTCTCTCATAGCTTTAAAGTTGGTGATGTTATCGCTTTTAAACCACTACGATTACAGTGTGTGGCTGCCGTTGAGGACAAGTTGAAGCATTTCGACATGATTGGTGGAGACCTTGAGTTATTAATGTTCTTGTTATTCTGCGGTGTCGTGTCCTATGGAGAAGCATTTACAAGTTTGGAGTTGTTGCAAAATGAATGTCGATTGATCAAGCGAGATGTCAAGGCTATTGTTGCAAGTACGATTATTCGGTTGCATTTAAATGAAGCTACTGAATTGATTTTATCAAGTGGCATGAGAGTTTGTCGTAAGAGTACAGACTTTGATGATGATCGGGTTATCTTTACAAGGTTCTCATATGGGGGTTTATCCGTACTTGTTGAAAGTGAGTACTCTTCTTGCTTGATGGGGCCAACTATTGCACGAGACATTGGTGTATATGGTTATAGACCTTCGGATCTGGTAGTTAAGCTTGCGTGTAAGAGGGCCAAAATCAACACAAAGCTTGGAGTATACACAAGAACCTCTAATTACAATGCCAACAATACTTATCAAACAAAGTTCACAAGTTGGTTGCATGTTGATCCGAGATTATATGAGCAGAAGCTATTTTTAACCATATTGCTGCAGCATGGAATATTTAAGGTGGGAGGAGAACTTATAGATGATGGAAACTTCATTGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

257

Amino Acids

29.12

Weight (kDa)

7.03

Isoelectric Point (pI)

24.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 597
AccIII TCCGGA 1 cut(s) 63
AciI CCGC 1 cut(s) 228
AclWI GGATC 2 cut(s) 549, 662
AfaI GTAC 4 cut(s) 325, 400, 459, 476
AgsI TTSAA 2 cut(s) 172, 467
AluBI AGCT 6 cut(s) 33, 99, 353, 556, 589, 691
AluI AGCT 6 cut(s) 33, 99, 353, 556, 589, 691
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 3 cut(s) 77, 189, 504
AlwI GGATC 2 cut(s) 549, 662
Aor13HI TCCGGA 1 cut(s) 63
AoxI GGCC 2 cut(s) 494, 570
ApeKI GCWGC 3 cut(s) 152, 709, 712
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AseI ATTAAT 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 494, 570
AsuHPI GGTGA 2 cut(s) 40, 122
BanII GRGCYC 1 cut(s) 35
BauI CACGAG 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 3 cut(s) 139, 696, 724
BccI CCATC 2 cut(s) 484, 746
BceAI ACGGC 1 cut(s) 140
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 3 cut(s) 77, 189, 504
BfmI CTRYAG 1 cut(s) 710
BisI GCNGC 3 cut(s) 153, 710, 713
BlsI GCNGC 3 cut(s) 154, 711, 714
BmcAI AGTACT 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 494, 570
BmiI GGNNCC 1 cut(s) 495
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpuEI CTTGAG 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 762
Bse8I GATNNNNATC 1 cut(s) 414
BseAI TCCGGA 1 cut(s) 63
BseJI GATNNNNATC 1 cut(s) 414
BseMI GCAATG 1 cut(s) 762
BseRI GAGGAG 1 cut(s) 750
BseXI GCAGC 3 cut(s) 139, 696, 724
BshFI GGCC 2 cut(s) 496, 572
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 64
BsmAI GTCTC 3 cut(s) 77, 189, 504
BsnI GGCC 2 cut(s) 496, 572
Bso31I GGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 35
Bsp13I TCCGGA 1 cut(s) 63
Bsp143I GATC 4 cut(s) 291, 415, 541, 667
BspACI CCGC 1 cut(s) 228
BspANI GGCC 2 cut(s) 496, 572
BspEI TCCGGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 495
BspMAI CTGCAG 1 cut(s) 714
BspPI GGATC 2 cut(s) 549, 662
BspTNI GGTCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 762
BssMI GATC 4 cut(s) 291, 415, 541, 667
BssNAI GTATAC 1 cut(s) 598
BssSI CACGAG 1 cut(s) 507
Bst1107I GTATAC 1 cut(s) 598
Bst2BI CACGAG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 558
BstKTI GATC 4 cut(s) 294, 418, 544, 670
BstMAI GTCTC 3 cut(s) 77, 189, 504
BstMBI GATC 4 cut(s) 291, 415, 541, 667
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 665
BstSFI CTRYAG 1 cut(s) 710
BstV1I GCAGC 3 cut(s) 139, 696, 724
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BstZ17I GTATAC 1 cut(s) 598
BsuRI GGCC 2 cut(s) 496, 572
BtsIMutI CAGTG 2 cut(s) 149, 769
Cac8I GCNNGC 1 cut(s) 558
Cfr13I GGNCC 2 cut(s) 494, 570
Csp6I GTAC 4 cut(s) 324, 399, 458, 475
CviAII CATG 6 cut(s) 36, 79, 184, 379, 662, 716
CviQI GTAC 4 cut(s) 324, 399, 458, 475
DpnI GATC 4 cut(s) 293, 417, 543, 669
DpnII GATC 4 cut(s) 291, 415, 541, 667
DraI TTTAAA 3 cut(s) 103, 127, 345
Eam1104I CTCTTC 1 cut(s) 484
EarI CTCTTC 1 cut(s) 484
Ecl136II GAGCTC 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 6 cut(s) 39, 82, 187, 382, 665, 719
FatI CATG 6 cut(s) 35, 78, 183, 378, 661, 715
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 3 cut(s) 153, 710, 713
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 3 cut(s) 153, 710, 713
GluI GCNGC 3 cut(s) 153, 710, 713
HaeIII GGCC 2 cut(s) 496, 572
HapII CCGG 1 cut(s) 64
Hin1II CATG 6 cut(s) 39, 82, 187, 382, 665, 719
HindIII AAGCTT 2 cut(s) 554, 587
HpaII CCGG 1 cut(s) 64
HphI GGTGA 2 cut(s) 40, 122
Hpy166II GTNNAC 2 cut(s) 598, 648
Hpy188I TCNGA 2 cut(s) 541, 672
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 598, 648
HpyAV CCTTC 1 cut(s) 546
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4V TGCA 6 cut(s) 274, 320, 340, 506, 661, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
Hsp92II CATG 6 cut(s) 39, 82, 187, 382, 665, 719
Kpn2I TCCGGA 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 4 cut(s) 291, 415, 541, 667
LpnPI CCDG 3 cut(s) 39, 77, 530
Lsp1109I GCAGC 3 cut(s) 139, 696, 724
MalI GATC 4 cut(s) 293, 417, 543, 669
MboI GATC 4 cut(s) 291, 415, 541, 667
MboII GAAGA 2 cut(s) 83, 471
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 2 cut(s) 359, 613
MnlI CCTC 4 cut(s) 154, 561, 619, 728
MroI TCCGGA 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 7 cut(s) 102, 126, 209, 344, 552, 698, 726
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeI CATATG 1 cut(s) 442
NdeII GATC 4 cut(s) 291, 415, 541, 667
NlaIII CATG 6 cut(s) 39, 82, 187, 382, 665, 719
NlaIV GGNNCC 1 cut(s) 495
NspI RCATGY 1 cut(s) 665
PdmI GAANNNNTTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 154, 711, 714
PshBI ATTAAT 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 2 cut(s) 494, 570
PstI CTGCAG 1 cut(s) 714
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 4 cut(s) 325, 400, 459, 476
RsaNI GTAC 4 cut(s) 324, 399, 458, 475
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 35
SaqAI TTAA 7 cut(s) 102, 126, 209, 344, 552, 698, 726
SatI GCNGC 3 cut(s) 153, 710, 713
Sau3AI GATC 4 cut(s) 291, 415, 541, 667
Sau96I GGNCC 2 cut(s) 494, 570
ScaI AGTACT 1 cut(s) 476
SduI GDGCHC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 710
SmiI ATTTAAAT 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 359, 613
SsiI CCGC 1 cut(s) 228
SspI AATATT 1 cut(s) 723
SstI GAGCTC 1 cut(s) 35
SwaI ATTTAAAT 1 cut(s) 345
TaaI ACNGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 180, 286
TasI AATT 2 cut(s) 359, 613
TatI WGTACW 2 cut(s) 398, 474
Tru1I TTAA 7 cut(s) 102, 126, 209, 344, 552, 698, 726
Tru9I TTAA 7 cut(s) 102, 126, 209, 344, 552, 698, 726
TscAI CASTG 1 cut(s) 149
TseI GCWGC 3 cut(s) 152, 709, 712
TspDTI ATGAA 4 cut(s) 84, 294, 363, 751
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 1 cut(s) 149
VspI ATTAAT 1 cut(s) 209
XceI RCATGY 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.