Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

8815318 .. 8816777

Gene Structure 1460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAAACTGATGGTGGGTTTGCAAACAATTTGGAGAAGATGTGTTTGTTTATTGCTCGTAGGTTTGAGATAATGGAAGGAAATGCACCAATATCTTGGAAGGGTATGGAAACCAATTTGTTTGCTCTTTGTGTGGTCGCTAAGGTACACCTACGGGAAAGCCAAATCTTGAATTTTTCGGTCATTATGCAGTTGGTGATGATTTTGTCCACTAGGCCTTTGGATGAACTGAAGGGCATCATGTGTATTAATGTGCATAGTTCTCTTGGAGACGTTGATGACTCTTATTCTAAAAATACGTGTGAAGAATCTCAAGGTTCGGCGATTAAAAAGTACTTGAGGGATGCAATTGAGTCATGGTTAGATGGAATTCTTGGTAAAAATGGTTCTTGTGAGATTAAATGGGGTGGCAATTTTACTAAACAAGGATCATTGGATTATGGTGCAGACTTCGGGTTTGGACTTTACATTGATCACCATTATTACTTGAGTTACTTTACGTATGGCATTTCGGTGCTTGCGAAGATTGAACTGGAATGGGGGATGAGGTATAAGCCTCAAGTTGATTCACTTGCTGCAGATTCCATGAACTTAGACAAGAGGACATGTTTCCATTATTCACTCGGTGAGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

212

Amino Acids

23.95

Weight (kDa)

5.24

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	102 - 201	5.3e-18	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	172, 369
AcuI	CTGAAG	1 cut(s)	251
AdeI	CACNNNGTG	1 cut(s)	626
AfaI	GTAC	2 cut(s)	147, 335
AflIII	ACRYGT	2 cut(s)	299, 605
AgsI	TTSAA	2 cut(s)	172, 530
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	436
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	2 cut(s)	172, 369
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AseI	ATTAAT	1 cut(s)	249
AsuHPI	GGTGA	3 cut(s)	208, 467, 638
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	2 cut(s)	5, 359
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
BmcAI	AGTACT	1 cut(s)	335
BmsI	GCATC	3 cut(s)	246, 334, 621
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	4 cut(s)	297, 358, 508, 543
BsaAI	YACGTR	2 cut(s)	300, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse1I	ACTGG	1 cut(s)	537
BseGI	GGATG	3 cut(s)	229, 349, 549
BseNI	ACTGG	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	562
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	264
BsmBI	CGTCTC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	428, 472
BspANI	GGCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	537
BssMI	GATC	2 cut(s)	428, 472
BstBAI	YACGTR	2 cut(s)	300, 501
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	141, 592
BstF5I	GGATG	3 cut(s)	229, 349, 549
BstKTI	GATC	2 cut(s)	431, 475
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	428, 472
BstNSI	RCATGY	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	576
BstSNI	TACGTA	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	562
BstXI	CCANNNNNNTGG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	229, 349, 549
Cac8I	GCNNGC	1 cut(s)	519
Csp6I	GTAC	2 cut(s)	146, 334
CviAII	CATG	4 cut(s)	241, 357, 586, 606
CviJI	RGCY	3 cut(s)	162, 217, 556
CviKI_1	RGCY	3 cut(s)	162, 217, 556
CviQI	GTAC	2 cut(s)	146, 334
DdeI	CTNAG	2 cut(s)	141, 592
DpnI	GATC	2 cut(s)	430, 474
DpnII	GATC	2 cut(s)	428, 472
DraIII	CACNNNGTG	1 cut(s)	626
Eco105I	TACGTA	1 cut(s)	501
Eco147I	AGGCCT	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	4 cut(s)	244, 360, 589, 609
FatI	CATG	4 cut(s)	240, 356, 585, 605
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	3 cut(s)	236, 356, 556
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	217
Hin1II	CATG	4 cut(s)	244, 360, 589, 609
HinfI	GANTC	5 cut(s)	281, 308, 353, 566, 581
HphI	GGTGA	3 cut(s)	208, 467, 638
Hpy166II	GTNNAC	2 cut(s)	148, 210
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	148, 210
HpyAV	CCTTC	3 cut(s)	71, 94, 226
HpyCH4IV	ACGT	3 cut(s)	273, 299, 500
HpyCH4V	TGCA	7 cut(s)	23, 86, 190, 256, 347, 446, 578
HpyF3I	CTNAG	2 cut(s)	141, 592
HpySE526I	ACGT	3 cut(s)	273, 299, 500
Hsp92II	CATG	4 cut(s)	244, 360, 589, 609
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	428, 472
LpnPI	CCDG	1 cut(s)	518
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	3 cut(s)	246, 334, 621
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	3 cut(s)	273, 299, 500
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	2 cut(s)	430, 474
MboI	GATC	2 cut(s)	428, 472
MboII	GAAGA	3 cut(s)	49, 317, 535
MfeI	CAATTG	1 cut(s)	348
MluCI	AATT	6 cut(s)	28, 115, 172, 348, 369, 412
MlyI	GAGTC	2 cut(s)	275, 362
MnlI	CCTC	4 cut(s)	333, 540, 567, 594
MseI	TTAA	3 cut(s)	249, 327, 399
MslI	CAYNNNNRTG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	348
NdeII	GATC	2 cut(s)	428, 472
NlaIII	CATG	4 cut(s)	244, 360, 589, 609
NspI	RCATGY	1 cut(s)	609
PceI	AGGCCT	1 cut(s)	217
PciI	ACATGT	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	308, 566, 581
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	2 cut(s)	275, 361
PpsI	GAGTC	2 cut(s)	275, 361
Ppu21I	YACGTR	2 cut(s)	300, 501
PscI	ACATGT	1 cut(s)	605
PshBI	ATTAAT	1 cut(s)	249
PsrI	GAACNNNNNNTAC	2 cut(s)	370, 402
PstI	CTGCAG	1 cut(s)	580
RsaI	GTAC	2 cut(s)	147, 335
RsaNI	GTAC	2 cut(s)	146, 334
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	249, 327, 399
SatI	GCNGC	1 cut(s)	576
Sau3AI	GATC	2 cut(s)	428, 472
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	2 cut(s)	275, 362
SetI	ASST	8 cut(s)	65, 147, 153, 276, 302, 319, 503, 551
SfaNI	GCATC	3 cut(s)	246, 334, 621
SfcI	CTRYAG	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	4 cut(s)	312, 337, 487, 558
SmoI	CTYRAG	4 cut(s)	312, 337, 487, 558
SnaBI	TACGTA	1 cut(s)	501
Sse9I	AATT	6 cut(s)	28, 115, 172, 348, 369, 412
SseBI	AGGCCT	1 cut(s)	217
SspMI	CTAG	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	217
TaiI	ACGT	3 cut(s)	276, 302, 503
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	6 cut(s)	28, 115, 172, 348, 369, 412
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	308, 566, 581
Tru1I	TTAA	3 cut(s)	249, 327, 399
Tru9I	TTAA	3 cut(s)	249, 327, 399
TseI	GCWGC	1 cut(s)	575
TspDTI	ATGAA	2 cut(s)	240, 602
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	2 cut(s)	172, 369
XceI	RCATGY	1 cut(s)	609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.