Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Reverse (-)

3445670 .. 3448314

Gene Structure 2645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGGAGCAACAATGAGAGGGAAAAGAAGAGCAAAGAGTTTATAGACTTGGGCAAAGAAAATGATATATTGAGTAGCATTGGTTCGCGAAGCTCCAGGGACTATAAGGAACAAATTTCAAAGCTAGAGGCAGTAGCTCAAAGGCAAGCAGGGAGTGGTGATCTAATTGTGGTATGCAATATAAACTATCTCATATCCCTCTGTCATATTTCAAATCCATGGTTCTTGTCAATATATGATGATTTCAAAACAACCAACAAGGAAGAATTCAAGCTGCCAGGTTTTGATGAATTTCGACGCTCAATTTCATTTGACTTGATGAAAGATCCGGTGATAGTAGCATCAGGGCATACACATGATGGAAACTTCATTGCTCAGTGGATAAATTCAGAGCACCAAACATGCCCCAAAAGTGGACAGAAACTTATTCACATGGCCCTTGTACCTAACTATGCATTGAAGAGTCTATTGCATCAATTGTGTGAGGAAAACAATTCCCTTGTCTCCCACTCACGTGACTTTGTAATTGCATTTGGTGGGAAGAAGGTGCATGACTCTAAACTTGAAGGGAAGATGGCGGGTCTCTACTTATTGTCTACATACAGTCCATACACAGAATTCACTCCAAAACTTATGGAGATTTATGAAAAGCTAAAAGCAAAGGTAGAGAGCTTTGAGATTATTTTTATATCACTTAATGATGCAGAAGAAGCATTCAAGCAAGATTTTAAGAACATGCCTTGGTTTGCATTGGGCCAGAATGACATCAAAACCTGTGATAAATTGACTCGGGATTCTGAGCTCTCAACCTCACCCATTCTTGTTATTATTGGGGCAGATGGAAAAACTATCCATAACAATGTTGCTGAAGCTATTGAAGACGTTGATGGCAAAGTCTATGATTTTCCAGTTATTATGCAGTTGGTGATGGTAATGGAATTTTCTAGCTTGTCTTTTGTGAAAAATGATAACTCAAGTCGGCGCATGGAGGTGTTTGAGAAGAAAAAGGGCTACATGGTTATTGGCTATGATATTACCCATGAGAAGGCTACTATCAATATTGTCAAGGTGCATGCAAAGAAGGCTTTTGATGAAAAATGGGTGGCAAAAATTGCAAGGAAAATTGTCATGGTTATGACAAATGAAAGTCTTTACACCACTACCTATACTGAAGTGATCACTGGAATTTGTAAGACCCTGCAACTTTCTGAATATGAGATTAGAAACTCAGATGGTTTATTACTTTATTTAATGGTGAACTTGCTAGACATTTTCCTCGTATTAAGTCTACATCAACTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009610 GO:0009617 GO:0009620 GO:0009877 GO:0009987 GO:0010033 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0036377 GO:0042221 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

434

Amino Acids

49.42

Weight (kDa)

5.99

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	96 - 164	7.3e-14	U-box domain
Thioredoxin_8	PF13905	190 - 282	7.1e-14	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	596, 1288
AccII	CGCG	1 cut(s)	88
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	7 cut(s)	114, 266, 290, 385, 617, 938, 1185
AcuI	CTGAAG	2 cut(s)	888, 1191
AcvI	CACGTG	1 cut(s)	515
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	2 cut(s)	413, 1045
AgsI	TTSAA	8 cut(s)	120, 213, 247, 271, 460, 566, 718, 878
AjnI	CCWGG	2 cut(s)	95, 277
AleI	CACNNNNGTG	1 cut(s)	513
AluBI	AGCT	9 cut(s)	93, 124, 137, 274, 652, 672, 802, 872, 948
AluI	AGCT	9 cut(s)	93, 124, 137, 274, 652, 672, 802, 872, 948
Alw21I	GWGCWC	2 cut(s)	396, 804
Alw26I	GTCTC	2 cut(s)	508, 587
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	789
AoxI	GGCC	2 cut(s)	435, 754
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	7 cut(s)	114, 266, 290, 385, 617, 938, 1185
AspLEI	GCGC	1 cut(s)	984
AspS9I	GGNCC	2 cut(s)	436, 754
AsuHPI	GGTGA	5 cut(s)	170, 343, 804, 937, 1267
AvaI	CYCGRG	1 cut(s)	789
BanII	GRGCYC	1 cut(s)	804
BbrPI	CACGTG	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	2 cut(s)	396, 804
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	6 cut(s)	353, 568, 833, 881, 922, 1226
BciT130I	CCWGG	2 cut(s)	97, 279
BclI	TGATCA	1 cut(s)	1176
BcoDI	GTCTC	2 cut(s)	508, 587
BfaI	CTAG	3 cut(s)	125, 945, 1265
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	2 cut(s)	97, 279
BmeT110I	CYCGRG	1 cut(s)	789
BmgT120I	GGNCC	2 cut(s)	436, 754
BmrFI	CCNGG	2 cut(s)	97, 279
BmsI	GCATC	3 cut(s)	350, 481, 691
BpiI	GAAGAC	1 cut(s)	885
BpmI	CTGGAG	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	958
BsaAI	YACGTR	1 cut(s)	515
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	3 cut(s)	96, 218, 740
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	1 cut(s)	1281
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 1045
Bse1I	ACTGG	2 cut(s)	908, 1186
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	97, 279
BseDI	CCNNGG	3 cut(s)	96, 218, 740
BseLI	CCNNNNNNNGG	2 cut(s)	413, 1045
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	389, 789, 1242
BseNI	ACTGG	2 cut(s)	908, 1186
BseRI	GAGGAG	1 cut(s)	1289
BseXI	GCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	437, 756
BsiHKAI	GWGCWC	2 cut(s)	396, 804
BsiHKCI	CYCGRG	1 cut(s)	789
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	413, 1045
BsmAI	GTCTC	2 cut(s)	508, 587
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	437, 756
Bso31I	GGTCTC	1 cut(s)	587
BsoBI	CYCGRG	1 cut(s)	789
Bsp1286I	GDGCHC	2 cut(s)	396, 804
Bsp143I	GATC	3 cut(s)	160, 325, 1176
Bsp19I	CCATGG	1 cut(s)	218
Bsp68I	TCGCGA	1 cut(s)	88
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	2 cut(s)	437, 756
BspCNI	CTCAG	3 cut(s)	388, 790, 1241
BspFNI	CGCG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	908, 1186
BssECI	CCNNGG	3 cut(s)	96, 218, 740
BssMI	GATC	3 cut(s)	160, 325, 1176
BssT1I	CCWWGG	2 cut(s)	218, 740
Bst2UI	CCWGG	2 cut(s)	97, 279
Bst4CI	ACNGT	1 cut(s)	605
Bst6I	CTCTTC	2 cut(s)	23, 455
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	147, 1074
BstDEI	CTNAG	3 cut(s)	375, 798, 1228
BstDSI	CCRYGG	1 cut(s)	218
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	3 cut(s)	163, 328, 1179
BstMAI	GTCTC	2 cut(s)	508, 587
BstMBI	GATC	3 cut(s)	160, 325, 1176
BstMWI	GCNNNNNNNGC	3 cut(s)	710, 1082, 1112
BstNI	CCWGG	2 cut(s)	97, 279
BstNSI	RCATGY	3 cut(s)	405, 739, 1076
BstSCI	CCNGG	2 cut(s)	95, 277
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	437, 756
BtgI	CCRYGG	1 cut(s)	218
BtsIMutI	CAGTG	2 cut(s)	383, 1179
BtuMI	TCGCGA	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	147, 1074
CfoI	GCGC	1 cut(s)	984
Cfr13I	GGNCC	2 cut(s)	436, 754
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	443
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	3 cut(s)	375, 798, 1228
DpnI	GATC	3 cut(s)	162, 327, 1178
DpnII	GATC	3 cut(s)	160, 325, 1176
Eam1104I	CTCTTC	2 cut(s)	23, 455
EarI	CTCTTC	2 cut(s)	23, 455
Ecl136II	GAGCTC	1 cut(s)	802
Eco130I	CCWWGG	2 cut(s)	218, 740
Eco24I	GRGCYC	1 cut(s)	804
Eco31I	GGTCTC	1 cut(s)	587
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	2 cut(s)	888, 1191
Eco72I	CACGTG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	789
EcoICRI	GAGCTC	1 cut(s)	802
EcoRI	GAATTC	2 cut(s)	266, 617
EcoRII	CCWGG	2 cut(s)	95, 277
EcoT14I	CCWWGG	2 cut(s)	218, 740
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	804
ErhI	CCWWGG	2 cut(s)	218, 740
FaqI	GGGAC	1 cut(s)	113
FauI	CCCGC	1 cut(s)	571
FbaI	TGATCA	1 cut(s)	1176
FblI	GTMKAC	2 cut(s)	596, 1288
Fnu4HI	GCNGC	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	3 cut(s)	125, 945, 1265
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	1 cut(s)	275
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	437, 756
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	984
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HinfI	GANTC	4 cut(s)	463, 554, 787, 794
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	5 cut(s)	170, 343, 804, 937, 1267
Hpy166II	GTNNAC	4 cut(s)	416, 597, 1258, 1289
Hpy188I	TCNGA	5 cut(s)	391, 799, 1210, 1231, 1304
Hpy188III	TCNNGA	2 cut(s)	87, 791
Hpy8I	GTNNAC	4 cut(s)	416, 597, 1258, 1289
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	4 cut(s)	538, 560, 1039, 1075
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4IV	ACGT	2 cut(s)	514, 882
HpyF10VI	GCNNNNNNNGC	3 cut(s)	710, 1082, 1112
HpyF3I	CTNAG	3 cut(s)	375, 798, 1228
HpySE526I	ACGT	2 cut(s)	514, 882
HspAI	GCGC	1 cut(s)	982
Ksp22I	TGATCA	1 cut(s)	1176
Kzo9I	GATC	3 cut(s)	160, 325, 1176
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	6, 98
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	3 cut(s)	350, 481, 691
MaeI	CTAG	3 cut(s)	125, 945, 1265
MaeII	ACGT	2 cut(s)	514, 882
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	3 cut(s)	162, 327, 1178
MboI	GATC	3 cut(s)	160, 325, 1176
MboII	GAAGA	8 cut(s)	40, 275, 472, 553, 583, 719, 890, 1012
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	396, 804
MlyI	GAGTC	3 cut(s)	472, 548, 781
MnlI	CCTC	7 cut(s)	12, 121, 209, 478, 820, 982, 1286
Mph1103I	ATGCAT	1 cut(s)	457
MseI	TTAA	4 cut(s)	696, 729, 1250, 1283
MslI	CAYNNNNRTG	5 cut(s)	354, 513, 858, 989, 1133
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	97, 279
MunI	CAATTG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	2 cut(s)	97, 279
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	710, 1082, 1112
NcoI	CCATGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	160, 325, 1176
NmuCI	GTSAC	1 cut(s)	515
NruI	TCGCGA	1 cut(s)	88
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	3 cut(s)	405, 739, 1076
OliI	CACNNNNGTG	1 cut(s)	513
PaeI	GCATGC	1 cut(s)	1076
PciSI	GCTCTTC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	794
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	3 cut(s)	471, 548, 781
PmaCI	CACGTG	1 cut(s)	515
PmlI	CACGTG	1 cut(s)	515
PpsI	GAGTC	3 cut(s)	471, 548, 781
Ppu21I	YACGTR	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	95, 277
PspCI	CACGTG	1 cut(s)	515
PspGI	CCWGG	2 cut(s)	95, 277
PspPI	GGNCC	2 cut(s)	436, 754
PsrI	GAACNNNNNNTAC	2 cut(s)	67, 99
PsuI	RGATCY	1 cut(s)	325
RruI	TCGCGA	1 cut(s)	88
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	5 cut(s)	354, 513, 858, 989, 1133
SacI	GAGCTC	1 cut(s)	804
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	696, 729, 1250, 1283
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	3 cut(s)	160, 325, 1176
Sau96I	GGNCC	2 cut(s)	436, 754
SchI	GAGTC	3 cut(s)	472, 548, 781
ScrFI	CCNGG	2 cut(s)	97, 279
SduI	GDGCHC	2 cut(s)	396, 804
SfaNI	GCATC	3 cut(s)	350, 481, 691
SmiMI	CAYNNNNRTG	5 cut(s)	354, 513, 858, 989, 1133
SmlI	CTYRAG	1 cut(s)	973
SmoI	CTYRAG	1 cut(s)	973
SphI	GCATGC	1 cut(s)	1076
SsiI	CCGC	1 cut(s)	578
SspI	AATATT	1 cut(s)	1060
SspMI	CTAG	3 cut(s)	125, 945, 1265
SstI	GAGCTC	1 cut(s)	804
StyD4I	CCNGG	2 cut(s)	95, 277
StyI	CCWWGG	2 cut(s)	218, 740
TaaI	ACNGT	1 cut(s)	605
TaiI	ACGT	2 cut(s)	517, 885
TaqI	TCGA	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	794
Tru1I	TTAA	4 cut(s)	696, 729, 1250, 1283
Tru9I	TTAA	4 cut(s)	696, 729, 1250, 1283
TscAI	CASTG	2 cut(s)	383, 1186
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	7 cut(s)	297, 303, 335, 358, 660, 1107, 1158
TspRI	CASTG	2 cut(s)	383, 1186
XapI	RAATTY	7 cut(s)	114, 266, 290, 385, 617, 938, 1185
XceI	RCATGY	3 cut(s)	405, 739, 1076
XmiI	GTMKAC	2 cut(s)	596, 1288
XspI	CTAG	3 cut(s)	125, 945, 1265
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.