RLG00000015595

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000779
Physical Location & Seq
Reverse (-)
68348431 .. 68350263
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015595

Sequence Viewer

Length: 384 bp
ATGAAAGCTGTTGTTGTAGAAAATCCCAATGATCTTAATGCAGTTGTCAATGATGTGCTGAATGAGGTTCTCCTTTTCTTGAACAAGCGTCCTGAAAGTCCTCCAAATGTTCAGTCTCCTAGCAGCCATTCAACTGCAGCTGAATCTGAAGAGCGGAGTAAAGAATTGATTCACCAGCAGGTTATCTTTACAAGTTTCTCATATGGGGGTTTGACCATACTTGTTGAAAGTGAGTACTTTTCTTGCTTGATGGGGCCAACTATTGCAGGAGAAATTGGTGTATATGGTTATAGACCTTCAGCTCTGGTAGATGGACTTGCTCTTAGGGCCCCATATGCAACTCATCTCCCTTATGAATGCCGTAGCTTTGAAACCCGGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

128

Amino Acids

13.96

Weight (kDa)

4.95

Isoelectric Point (pI)

65.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 168, 282
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 4 cut(s) 82, 132, 227, 371
AluBI AGCT 4 cut(s) 8, 140, 302, 366
AluI AGCT 4 cut(s) 8, 140, 302, 366
Alw26I GTCTC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 2 cut(s) 254, 327
ApaI GGGCCC 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 123, 137
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 168
AspS9I GGNCC 3 cut(s) 254, 327, 328
AsuC2I CCSGG 2 cut(s) 376, 377
AsuHPI GGTGA 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 375
BaeGI GKGCMC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 135, 149
BccI CCATC 2 cut(s) 244, 305
BceAI ACGGC 1 cut(s) 345
BcnI CCSGG 2 cut(s) 376, 377
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 2 cut(s) 124, 138
BlsI GCNGC 2 cut(s) 125, 139
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 2 cut(s) 376, 377
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 3 cut(s) 254, 327, 328
BmiI GGNNCC 3 cut(s) 255, 329, 330
BmrFI CCNGG 2 cut(s) 376, 377
BpuMI CCSGG 2 cut(s) 376, 377
BsaJI CCNNGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 375
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 2 cut(s) 135, 149
BshFI GGCC 2 cut(s) 256, 329
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 2 cut(s) 256, 329
BsoBI CYCGRG 1 cut(s) 375
Bsp120I GGGCCC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 1 cut(s) 154
BspANI GGCC 2 cut(s) 256, 329
BspLI GGNNCC 3 cut(s) 255, 329, 330
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 144
BsrBI CCGCTC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 323
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 326, 335
BstSCI CCNGG 2 cut(s) 374, 375
BstSFI CTRYAG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 135, 149
BsuRI GGCC 2 cut(s) 256, 329
BveI ACCTGC 1 cut(s) 169
Cfr13I GGNCC 3 cut(s) 254, 327, 328
Cfr9I CCCGGG 1 cut(s) 375
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 235
CviJI RGCY 7 cut(s) 8, 126, 140, 256, 302, 329, 366
CviKI_1 RGCY 7 cut(s) 8, 126, 140, 256, 302, 329, 366
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 323
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 331
Eco57I CTGAAG 2 cut(s) 168, 282
Eco88I CYCGRG 1 cut(s) 375
EcoO109I RGGNCCY 2 cut(s) 327, 328
EcoT38I GRGCYC 1 cut(s) 331
FaiI YATR 9 cut(s) 202, 204, 218, 283, 285, 291, 334, 336, 354
FauNDI CATATG 2 cut(s) 202, 334
Fnu4HI GCNGC 2 cut(s) 124, 138
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 2 cut(s) 124, 138
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 124, 138
HaeIII GGCC 2 cut(s) 256, 329
HapII CCGG 1 cut(s) 376
HgaI GACGC 1 cut(s) 77
HinfI GANTC 2 cut(s) 143, 169
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 79, 92
HpyAV CCTTC 1 cut(s) 306
HpyCH4V TGCA 4 cut(s) 41, 137, 266, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 335
HpyF3I CTNAG 1 cut(s) 323
Kzo9I GATC 1 cut(s) 31
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 105, 164, 188, 252, 290
Lsp1109I GCAGC 2 cut(s) 135, 149
MaeI CTAG 1 cut(s) 120
MalI GATC 1 cut(s) 33
MbiI CCGCTC 1 cut(s) 154
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 2 cut(s) 164, 273
MnlI CCTC 2 cut(s) 58, 111
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 2 cut(s) 376, 377
Mva1269I GAATGC 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 326, 335
NciI CCSGG 2 cut(s) 376, 377
NdeI CATATG 2 cut(s) 202, 334
NdeII GATC 1 cut(s) 31
NlaIV GGNNCC 3 cut(s) 255, 329, 330
PciSI GCTCTTC 1 cut(s) 144
PctI GAATGC 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 143, 169
PkrI GCNGC 2 cut(s) 125, 139
PspN4I GGNNCC 3 cut(s) 255, 329, 330
PspOMI GGGCCC 1 cut(s) 327
PspPI GGNCC 3 cut(s) 254, 327, 328
PstI CTGCAG 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 124, 138
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 3 cut(s) 254, 327, 328
ScaI AGTACT 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 376, 377
SduI GDGCHC 1 cut(s) 331
SetI ASST 7 cut(s) 10, 69, 142, 183, 298, 304, 368
SfcI CTRYAG 1 cut(s) 135
SmaI CCCGGG 1 cut(s) 377
Sse9I AATT 2 cut(s) 164, 273
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 374, 375
TasI AATT 2 cut(s) 164, 273
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 2 cut(s) 143, 169
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 2 cut(s) 123, 137
TspDTI ATGAA 2 cut(s) 17, 369
TspMI CCCGGG 1 cut(s) 375
XmaI CCCGGG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.