Rh5CG501600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000779
Physical Location & Seq
Forward (+)
69702034 .. 69717864
15831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG501600.1

Sequence Viewer

Length: 345 bp
ATGAACATTTTTGGGAGTAAAATTGGTAGAAATGGTGAGCTTGCACTTTTAGGTTCTTTATCACAGCATCCGCAATTCAACGAATCAGTGAGCTCGCTGCTGCCGTCATCTATTCAAACTTCTCCAGGATCAGCTCAGGCATTGGCCCCAACTAAAGGTTTTGTACGAGAAGAGGAAGACGTCGACAAAAATAGGACAGGTGAACTTACAGAGCTTGATAGCCTATTGACTATGCTGAATTTCAAGAGACAAGGGGTTTTCAAAAAGAACAATGTGCTGTTATTATGTGGTCCAGAGCTCTTTCAAGTTTCAAAGAAGATAGGGTACTGCCAGTACAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.57

Weight (kDa)

8.62

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 183
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 3 cut(s) 165, 326, 335
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 6 cut(s) 79, 116, 244, 262, 305, 312
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 5 cut(s) 40, 93, 134, 214, 298
AluI AGCT 5 cut(s) 40, 93, 134, 214, 298
Alw21I GWGCWC 2 cut(s) 95, 300
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 1 cut(s) 136
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 97, 100
ApoI RAATTY 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 145, 290
AsuHPI GGTGA 2 cut(s) 47, 212
AvaII GGWCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 95, 300
BarI GAAGNNNNNNTAC 2 cut(s) 308, 340
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 95, 300
BbvI GCAGC 2 cut(s) 84, 87
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 241
BisI GCNGC 2 cut(s) 98, 101
BlsI GCNGC 2 cut(s) 99, 102
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 145, 290
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 2 cut(s) 84, 87
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 95, 300
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 241
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 95, 300
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 331
BssMI GATC 1 cut(s) 128
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 42, 95
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 84, 87
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 42, 95
Cfr13I GGNCC 2 cut(s) 145, 290
Csp6I GTAC 3 cut(s) 164, 325, 334
CviJI RGCY 7 cut(s) 40, 93, 134, 146, 214, 222, 298
CviKI_1 RGCY 7 cut(s) 40, 93, 134, 146, 214, 222, 298
CviQI GTAC 3 cut(s) 164, 325, 334
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 2 cut(s) 93, 298
Eco24I GRGCYC 2 cut(s) 95, 300
Eco47I GGWCC 1 cut(s) 290
Eco53kI GAGCTC 2 cut(s) 93, 298
EcoICRI GAGCTC 2 cut(s) 93, 298
EcoRII CCWGG 1 cut(s) 124
EcoT38I GRGCYC 2 cut(s) 95, 300
FaiI YATR 2 cut(s) 233, 286
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 98, 101
FokI GGATG 1 cut(s) 54
FriOI GRGCYC 2 cut(s) 95, 300
Fsp4HI GCNGC 2 cut(s) 98, 101
GluI GCNGC 2 cut(s) 98, 101
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 1 cut(s) 83
HphI GGTGA 2 cut(s) 47, 212
Hpy166II GTNNAC 2 cut(s) 184, 203
Hpy188III TCNNGA 2 cut(s) 244, 293
Hpy8I GTNNAC 2 cut(s) 184, 203
Hpy99I CGWCG 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 128
LpnPI CCDG 5 cut(s) 111, 122, 138, 183, 306
Lsp1109I GCAGC 2 cut(s) 84, 87
LweI GCATC 1 cut(s) 76
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 3 cut(s) 182, 188, 328
MhlI GDGCHC 2 cut(s) 95, 300
MluCI AATT 3 cut(s) 21, 74, 238
MnlI CCTC 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
NdeII GATC 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PfeI GAWTC 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 2 cut(s) 99, 102
Psp124BI GAGCTC 2 cut(s) 95, 300
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 145, 290
RsaI GTAC 3 cut(s) 165, 326, 335
RsaNI GTAC 3 cut(s) 164, 325, 334
SacI GAGCTC 2 cut(s) 95, 300
SalI GTCGAC 1 cut(s) 182
SatI GCNGC 2 cut(s) 98, 101
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 2 cut(s) 145, 290
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 2 cut(s) 95, 300
SetI ASST 9 cut(s) 42, 55, 95, 136, 160, 183, 202, 216, 300
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 290
Sse9I AATT 3 cut(s) 21, 74, 238
SsiI CCGC 1 cut(s) 71
SstI GAGCTC 2 cut(s) 95, 300
StyD4I CCNGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 183
TasI AATT 3 cut(s) 21, 74, 238
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 1 cut(s) 83
TscAI CASTG 1 cut(s) 93
TseI GCWGC 2 cut(s) 97, 100
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 183
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.