Rroxscaffold_1G00043440

Non-specific phospholipase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
61973455 .. 61974593
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043440.1

Sequence Viewer

Length: 693 bp
ATGGCCCTTCTACCTAACTATGCACCGAAGAGTCTATTGCATCAATGGTGTGAGGAAAACAAGTGCTTGGTCTCCCTCTCACGTGCTTTTGAAATTGCATTTGGTGGGAAGAAGGTGCATGTCTCTCAACTTGAAGGGAAGAAAACTGTCCATAACAATGTTGCTGAAGTTATTGCGGACATTGATGGCAAACTCTATGATATCTCGGTTATTATGCAGTTGGTGATGGTTTTGTCCACTAGGCCTATGGATGAAGTGAAGGGCATCATGTGTATCGTGCATGAATCTCTAGCAGGTAATCCAACTGGGAGATTTGATCAATTCAAATTCAAAGCATTTGTTTTGATGATCACTTCGAGGGTAAGCTACCTTGCAAGTGGTTGTCGGGCTTCCATTTTCCAGAATGGAATTTCTCATATGCAGGCGAAGGAGTACGGTGGTCTATCCGAGTTTCGGGGGTTGGTTGTCCAAGTACTCCGGTTAGCTGCAGTGCTTAATGGAGATCACTTCTTGAGTAGCTTCCCTTATGGAATGAGTAAGAAGATGAGTGTGAAGGAAGCTCACGAGTATATAAAGGGTGCTGTTTCAAGATTCATTAGAGCAAACAAAGAGGCCATCAAGTTGGGAGCAATCAAATCAGCAATAGTAGATATAAGATCTTCCCTCACAATAAGCTCCAAAACTAAAAATTAA

Protein Analysis

230

Amino Acids

25.4

Weight (kDa)

9.55

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 284
AciI CCGC 1 cut(s) 176
AcsI RAATTY 2 cut(s) 326, 408
AcuI CTGAAG 1 cut(s) 186
AcvI CACGTG 1 cut(s) 83
AfaI GTAC 2 cut(s) 434, 474
AfiI CCNNNNNNNGG 1 cut(s) 453
AgsI TTSAA 5 cut(s) 92, 134, 325, 331, 588
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 5 cut(s) 366, 485, 519, 560, 675
AluI AGCT 5 cut(s) 366, 485, 519, 560, 675
Alw26I GTCTC 2 cut(s) 76, 127
AoxI GGCC 3 cut(s) 3, 242, 612
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 2 cut(s) 326, 408
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 235
BauI CACGAG 1 cut(s) 563
BbrPI CACGTG 1 cut(s) 83
BbvI GCAGC 1 cut(s) 472
BccI CCATC 3 cut(s) 179, 220, 623
BclI TGATCA 2 cut(s) 316, 348
BcoDI GTCTC 2 cut(s) 76, 127
BfaI CTAG 2 cut(s) 240, 290
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 656
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
BmcAI AGTACT 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 49, 273
BmuI ACTGGG 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 532
BsaAI YACGTR 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 477
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse1I ACTGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 472
BshFI GGCC 3 cut(s) 5, 244, 614
BsiSI CCGG 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 2 cut(s) 76, 127
BsnI GGCC 3 cut(s) 5, 244, 614
Bso31I GGTCTC 1 cut(s) 76
Bsp143I GATC 4 cut(s) 316, 348, 502, 656
BspACI CCGC 1 cut(s) 176
BspANI GGCC 3 cut(s) 5, 244, 614
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 310
BssMI GATC 4 cut(s) 316, 348, 502, 656
BssSI CACGAG 1 cut(s) 563
Bst2BI CACGAG 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 148, 437
Bst6I CTCTTC 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 423
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 4 cut(s) 319, 351, 505, 659
BstMAI GTCTC 2 cut(s) 76, 127
BstMBI GATC 4 cut(s) 316, 348, 502, 656
BstNSI RCATGY 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 656
BstXI CCANNNNNNTGG 1 cut(s) 622
BstYI RGATCY 1 cut(s) 656
BsuRI GGCC 3 cut(s) 5, 244, 614
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 495
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 433, 473
CviAII CATG 3 cut(s) 119, 268, 281
CviJI RGCY 9 cut(s) 5, 244, 366, 389, 485, 519, 560, 614, 675
CviKI_1 RGCY 9 cut(s) 5, 244, 366, 389, 485, 519, 560, 614, 675
CviQI GTAC 2 cut(s) 433, 473
DpnI GATC 4 cut(s) 318, 350, 504, 658
DpnII GATC 4 cut(s) 316, 348, 502, 656
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco147I AGGCCT 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 76
Eco32I GATATC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 186
Eco72I CACGTG 1 cut(s) 83
EcoRV GATATC 1 cut(s) 202
FaeI CATG 3 cut(s) 122, 271, 284
FatI CATG 3 cut(s) 118, 267, 280
FauNDI CATATG 1 cut(s) 417
FbaI TGATCA 2 cut(s) 316, 348
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 2 cut(s) 240, 290
GluI GCNGC 1 cut(s) 486
HaeIII GGCC 3 cut(s) 5, 244, 614
HapII CCGG 1 cut(s) 478
Hin1II CATG 3 cut(s) 122, 271, 284
HinfI GANTC 3 cut(s) 31, 284, 591
HpaII CCGG 1 cut(s) 478
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 4 cut(s) 400, 511, 563, 588
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 6 cut(s) 17, 106, 128, 253, 421, 547
HpyCH4III ACNGT 2 cut(s) 148, 437
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 9 cut(s) 23, 40, 98, 118, 217, 280, 374, 421, 488
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 3 cut(s) 122, 271, 284
Ksp22I TGATCA 2 cut(s) 316, 348
Kzo9I GATC 4 cut(s) 316, 348, 502, 656
LmnI GCTCC 2 cut(s) 626, 680
LpnPI CCDG 5 cut(s) 279, 291, 407, 413, 491
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 2 cut(s) 49, 273
MaeI CTAG 2 cut(s) 240, 290
MaeII ACGT 1 cut(s) 82
MalI GATC 4 cut(s) 318, 350, 504, 658
MboI GATC 4 cut(s) 316, 348, 502, 656
MboII GAAGA 5 cut(s) 40, 121, 151, 553, 651
MflI RGATCY 1 cut(s) 656
MluCI AATT 5 cut(s) 93, 320, 326, 408, 688
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 5 cut(s) 46, 86, 351, 604, 674
MseI TTAA 2 cut(s) 495, 691
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 478
NdeI CATATG 1 cut(s) 417
NdeII GATC 4 cut(s) 316, 348, 502, 656
NlaIII CATG 3 cut(s) 122, 271, 284
NspI RCATGY 1 cut(s) 122
PceI AGGCCT 1 cut(s) 244
PfeI GAWTC 2 cut(s) 284, 591
PkrI GCNGC 1 cut(s) 487
PleI GAGTC 1 cut(s) 39
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 1 cut(s) 83
PspCI CACGTG 1 cut(s) 83
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 656
RsaI GTAC 2 cut(s) 434, 474
RsaNI GTAC 2 cut(s) 433, 473
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 495, 691
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 4 cut(s) 316, 348, 502, 656
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 474
SchI GAGTC 1 cut(s) 40
SfaNI GCATC 2 cut(s) 49, 273
SfcI CTRYAG 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
Sse9I AATT 5 cut(s) 93, 320, 326, 408, 688
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 1 cut(s) 176
SspMI CTAG 2 cut(s) 240, 290
StuI AGGCCT 1 cut(s) 244
TaaI ACNGT 2 cut(s) 148, 437
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 356
TasI AATT 5 cut(s) 93, 320, 326, 408, 688
TatI WGTACW 1 cut(s) 472
TfiI GAWTC 2 cut(s) 284, 591
Tru1I TTAA 2 cut(s) 495, 691
Tru9I TTAA 2 cut(s) 495, 691
TscAI CASTG 1 cut(s) 495
TseI GCWGC 1 cut(s) 485
TspDTI ATGAA 3 cut(s) 267, 297, 583
TspRI CASTG 1 cut(s) 495
XapI RAATTY 2 cut(s) 326, 408
XceI RCATGY 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XspI CTAG 2 cut(s) 240, 290
ZrmI AGTACT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.