Rmu_sc0003340.1_g000008

Endo-1,3(4)-beta-glucanase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003340.1
Physical Location & Seq
Reverse (-)
17124 .. 17444
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003340.1_g000008.1.cds

Sequence Viewer

Length: 321 bp
atgaggtataagcctcaagttgattcacttgctgcagatttcatgaacctggacaagaggacagatttccattattccctggtgagatgctttgatttgtgtaaactgcattcacgggcaggaggggtgacttacaaggaaacaatgcaggatggttatgtaatttcaaaattctggtttgagattgtggctatttgtttgagcagcagattattccttaaacttgaggtcaagtttcaattgaagaggggtgatgttgttaggacccaactatgtgatcaaccgagcctaacttgtatccaggcccagaatcctgtgtag

Protein Analysis

106

Amino Acids

12.32

Weight (kDa)

8.88

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 170
AgsI TTSAA 3 cut(s) 168, 239, 244
AjnI CCWGG 3 cut(s) 48, 78, 300
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 32, 204
ApoI RAATTY 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 264, 304
AsuHPI GGTGA 3 cut(s) 94, 139, 263
AvaII GGWCC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 19, 216
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 3 cut(s) 50, 80, 302
BciVI GTATCC 1 cut(s) 308
BclI TGATCA 1 cut(s) 277
BfmI CTRYAG 1 cut(s) 33
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 2 cut(s) 33, 205
BlsI GCNGC 2 cut(s) 34, 206
Bme1390I CCNGG 3 cut(s) 50, 80, 302
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 264, 304
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 3 cut(s) 50, 80, 302
BmsI GCATC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 78
BseBI CCWGG 3 cut(s) 50, 80, 302
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 157
BseXI GCAGC 2 cut(s) 19, 216
BshFI GGCC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 277
BspANI GGCC 1 cut(s) 305
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 266
BspMAI CTGCAG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 277
Bst2UI CCWGG 3 cut(s) 50, 80, 302
Bst6I CTCTTC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstNI CCWGG 3 cut(s) 50, 80, 302
BstSCI CCNGG 3 cut(s) 48, 78, 300
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 19, 216
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 1 cut(s) 157
CciI TCATGA 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 264, 304
CviAII CATG 1 cut(s) 43
CviJI RGCY 4 cut(s) 13, 191, 288, 305
CviKI_1 RGCY 4 cut(s) 13, 191, 288, 305
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 3 cut(s) 48, 78, 300
FaeI CATG 1 cut(s) 46
FaiI YATR 4 cut(s) 9, 44, 159, 274
FatI CATG 1 cut(s) 42
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 33, 205
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 33, 205
GluI GCNGC 2 cut(s) 33, 205
HaeIII GGCC 1 cut(s) 305
Hin1II CATG 1 cut(s) 46
HinfI GANTC 2 cut(s) 23, 310
HphI GGTGA 3 cut(s) 94, 139, 263
Hpy166II GTNNAC 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 35, 109, 148
Hsp92II CATG 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 1 cut(s) 277
LpnPI CCDG 9 cut(s) 35, 62, 65, 92, 105, 134, 160, 287, 314
Lsp1109I GCAGC 2 cut(s) 19, 216
LweI GCATC 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 256
MfeI CAATTG 1 cut(s) 239
MluCI AATT 3 cut(s) 162, 170, 239
MnlI CCTC 5 cut(s) 24, 51, 116, 220, 240
MseI TTAA 1 cut(s) 219
MspR9I CCNGG 3 cut(s) 50, 80, 302
MunI CAATTG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 3 cut(s) 50, 80, 302
NdeII GATC 1 cut(s) 277
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 127
PagI TCATGA 1 cut(s) 42
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 23, 310
PkrI GCNGC 2 cut(s) 34, 206
PpuMI RGGWCCY 1 cut(s) 264
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 3 cut(s) 48, 78, 300
PspGI CCWGG 3 cut(s) 48, 78, 300
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 2 cut(s) 264, 304
PspPPI RGGWCCY 1 cut(s) 264
PstI CTGCAG 1 cut(s) 37
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 33, 205
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 2 cut(s) 264, 304
ScrFI CCNGG 3 cut(s) 50, 80, 302
SetI ASST 3 cut(s) 8, 51, 231
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 15, 224
SmoI CTYRAG 2 cut(s) 15, 224
Sse9I AATT 3 cut(s) 162, 170, 239
StyD4I CCNGG 3 cut(s) 48, 78, 300
TasI AATT 3 cut(s) 162, 170, 239
TfiI GAWTC 2 cut(s) 23, 310
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 32, 204
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 31, 59
VpaK11BI GGWCC 1 cut(s) 264
XapI RAATTY 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.