Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

75944013 .. 75945409

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34540

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATGCTGCCGACACCACCATTATTGGCCACGTCGGATCTCTACCACTACCAGCAGCAACAACCTCCACCTCTGCTGCCGTCAAGACCACCAGTCCTTCACCAGCAGCAAGAGGTGTGGTACTCGAACCAAAATCAGTACCAGTCATTACAGCCCCCATCGCCTCTACAACAGTGGGTTTGGCCACCTCACGCCAACCATCTACCTCCCTCGCTGGGCTATTATCATCCACCACCGCCTCCTCATTATGCGCACCATTATTATCCTCAATCTCTCTCTCACGGACCTCCTCAGTCTTATTATCCTCAGCAGCTCAATCGGGAATGGGCAGCTCAAAGTCCACCAAGGTTGGTGCAGCAGAAGTCGGGAACTGGGTTGGCTGAGATGGGCCCAGAGATCAACTCGTTTTACTCATCGGGTTCTTCTTCTATTATGACTATGGGCTCCTTTCAAGTGCAACTTATTGGATGTTTGAGCACGATGGTGGAATTTGAAATTGAAGGCATTGAAGTTCCAATAGGTGTGAGCTTGGAGAATGGATTTGATCAAATTAGCCGTGATGTTGAATTGCAGTCCGAGTATGACAAAGTGGTTGTTGCTGAAATAGGGGATGTGGAGTTGAAAACTGATGTTGTTGGTGCCGACGGAGTTGATTTCTGGGAGAGAGAGGAAAAAGAACTTGAAGCTAAAGATTGTGAAGTTGTTGATGATGATGATAAGGACGATGAAAGGGAAAATGACAACATGATATTTAGGAACTTTGTACCTGCTAAACAATTATTGGAAGAGCTGGAACGAGAATCGGATACTGGTTCTTACTCAAGTGCAGAGAGTTATGGCGACCGTTCTCTGAGTTATGGTGATGATTCTCAGAGAGTTGATAGGCAGATTATGTCAGGCTTTGGTAAAGAAGTGAATACTAATGAACGTTTTTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

313

Amino Acids

35.67

Weight (kDa)

4.45

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	638
AciI	CCGC	1 cut(s)	236
AclI	AACGTT	1 cut(s)	928
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	2 cut(s)	27, 182
AcsI	RAATTY	1 cut(s)	488
AfaI	GTAC	3 cut(s)	122, 140, 765
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	7 cut(s)	452, 494, 500, 509, 566, 622, 683
AhdI	GACNNNNNGTC	1 cut(s)	92
AjiI	CACGTC	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	5 cut(s)	313, 332, 528, 686, 790
AluI	AGCT	5 cut(s)	313, 332, 528, 686, 790
Alw21I	GWGCWC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	27, 182, 388
ApaI	GGGCCC	1 cut(s)	392
ApeKI	GCWGC	7 cut(s)	7, 55, 76, 106, 310, 329, 355
ApoI	RAATTY	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	3 cut(s)	284, 388, 389
AsuHPI	GGTGA	2 cut(s)	92, 872
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	392
BalI	TGGCCA	2 cut(s)	29, 184
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	2 cut(s)	392, 446
Bbv12I	GWGCWC	1 cut(s)	479
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	6 cut(s)	63, 67, 118, 322, 341, 367
BccI	CCATC	4 cut(s)	166, 207, 379, 475
BceAI	ACGGC	2 cut(s)	64, 540
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciVI	GTATCC	1 cut(s)	799
BclI	TGATCA	1 cut(s)	544
BfuAI	ACCTGC	1 cut(s)	775
BfuI	GTATCC	1 cut(s)	799
BisI	GCNGC	7 cut(s)	8, 56, 77, 107, 311, 330, 356
BlsI	GCNGC	7 cut(s)	9, 57, 78, 108, 312, 331, 357
Bme18I	GGWCC	1 cut(s)	284
BmeRI	GACNNNNNGTC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	3 cut(s)	284, 388, 389
BmiI	GGNNCC	3 cut(s)	390, 445, 640
BmrI	ACTGGG	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	381
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	805
BsaJI	CCNNGG	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	4 cut(s)	92, 142, 376, 814
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	3 cut(s)	226, 473, 616
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	5 cut(s)	305, 320, 372, 842, 884
BseNI	ACTGG	4 cut(s)	92, 142, 376, 814
BseRI	GAGGAG	2 cut(s)	231, 279
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	6 cut(s)	63, 67, 118, 322, 341, 367
BseYI	CCCAGC	1 cut(s)	214
BsgI	GTGCAG	2 cut(s)	374, 846
Bsh1285I	CGRYCG	1 cut(s)	844
BshFI	GGCC	3 cut(s)	29, 184, 390
BshNI	GGYRCC	1 cut(s)	638
BsiEI	CGRYCG	1 cut(s)	844
BsiHKAI	GWGCWC	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	215
BsnI	GGCC	3 cut(s)	29, 184, 390
Bsp120I	GGGCCC	1 cut(s)	388
Bsp1286I	GDGCHC	3 cut(s)	392, 446, 479
Bsp143I	GATC	3 cut(s)	37, 396, 544
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	3 cut(s)	29, 184, 390
BspCNI	CTCAG	5 cut(s)	304, 319, 373, 843, 883
BspLI	GGNNCC	3 cut(s)	390, 445, 640
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	1 cut(s)	45
BspQI	GCTCTTC	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	638
BsrI	ACTGG	4 cut(s)	92, 142, 376, 814
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	3 cut(s)	37, 396, 544
BssT1I	CCWWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	174, 845
Bst6I	CTCTTC	1 cut(s)	780
BstDEI	CTNAG	5 cut(s)	291, 306, 381, 851, 870
BstF5I	GGATG	3 cut(s)	226, 473, 616
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	3 cut(s)	40, 399, 547
BstMBI	GATC	3 cut(s)	37, 396, 544
BstMCI	CGRYCG	1 cut(s)	844
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	392
BstV1I	GCAGC	6 cut(s)	63, 67, 118, 322, 341, 367
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	3 cut(s)	29, 184, 390
BtgZI	GCGATG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	226, 473, 616
BtsIMutI	CAGTG	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	775
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	284, 388, 389
Csp6I	GTAC	3 cut(s)	121, 139, 764
CspCI	CAANNNNNGTGG	6 cut(s)	6, 41, 98, 133, 330, 365
CviAII	CATG	1 cut(s)	745
CviQI	GTAC	3 cut(s)	121, 139, 764
DdeI	CTNAG	5 cut(s)	291, 306, 381, 851, 870
DpnI	GATC	3 cut(s)	39, 398, 546
DpnII	GATC	3 cut(s)	37, 396, 544
DriI	GACNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	2 cut(s)	27, 182
Eam1104I	CTCTTC	1 cut(s)	780
Eam1105I	GACNNNNNGTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	780
Eco130I	CCWWGG	1 cut(s)	344
Eco24I	GRGCYC	2 cut(s)	392, 446
Eco47I	GGWCC	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	344
EcoT38I	GRGCYC	2 cut(s)	392, 446
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	1 cut(s)	748
FaiI	YATR	8 cut(s)	249, 434, 440, 582, 746, 837, 858, 893
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	1 cut(s)	744
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	7 cut(s)	8, 56, 77, 107, 311, 330, 356
FokI	GGATG	3 cut(s)	213, 480, 623
FriOI	GRGCYC	2 cut(s)	392, 446
Fsp4HI	GCNGC	7 cut(s)	8, 56, 77, 107, 311, 330, 356
FspAI	RTGCGCAY	1 cut(s)	252
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	7 cut(s)	8, 56, 77, 107, 311, 330, 356
GsaI	CCCAGC	1 cut(s)	218
HaeIII	GGCC	3 cut(s)	29, 184, 390
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	1 cut(s)	748
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	2 cut(s)	800, 866
HphI	GGTGA	2 cut(s)	92, 872
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	5 cut(s)	37, 577, 805, 852, 873
Hpy188III	TCNNGA	3 cut(s)	84, 320, 366
Hpy8I	GTNNAC	1 cut(s)	341
Hpy99I	CGWCG	2 cut(s)	37, 647
HpyAV	CCTTC	2 cut(s)	107, 494
HpyCH4III	ACNGT	2 cut(s)	174, 845
HpyCH4IV	ACGT	2 cut(s)	32, 928
HpyCH4V	TGCA	4 cut(s)	355, 457, 571, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	5 cut(s)	291, 306, 381, 851, 870
HpySE526I	ACGT	2 cut(s)	32, 928
Hsp92II	CATG	1 cut(s)	748
HspAI	GCGC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	37, 396, 544
LguI	GCTCTTC	1 cut(s)	780
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	6 cut(s)	63, 67, 118, 322, 341, 367
MaeII	ACGT	2 cut(s)	32, 928
MalI	GATC	3 cut(s)	39, 398, 546
MboI	GATC	3 cut(s)	37, 396, 544
MboII	GAAGA	3 cut(s)	414, 417, 797
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	3 cut(s)	392, 446, 479
MlsI	TGGCCA	2 cut(s)	29, 184
MluCI	AATT	5 cut(s)	488, 495, 549, 566, 776
MluNI	TGGCCA	2 cut(s)	29, 184
MmeI	TCCRAC	1 cut(s)	15
Mox20I	TGGCCA	2 cut(s)	29, 184
MscI	TGGCCA	2 cut(s)	29, 184
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	2 cut(s)	29, 184
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	3 cut(s)	37, 396, 544
NlaIII	CATG	1 cut(s)	748
NlaIV	GGNNCC	3 cut(s)	390, 445, 640
NsbI	TGCGCA	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	780
PfeI	GAWTC	2 cut(s)	800, 866
PkrI	GCNGC	7 cut(s)	9, 57, 78, 108, 312, 331, 357
Psp1406I	AACGTT	1 cut(s)	928
PspFI	CCCAGC	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	390, 445, 640
PspOMI	GGGCCC	1 cut(s)	388
PspPI	GGNCC	3 cut(s)	284, 388, 389
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	3 cut(s)	122, 140, 765
RsaNI	GTAC	3 cut(s)	121, 139, 764
RseI	CAYNNNNRTG	1 cut(s)	482
SapI	GCTCTTC	1 cut(s)	780
SatI	GCNGC	7 cut(s)	8, 56, 77, 107, 311, 330, 356
Sau3AI	GATC	3 cut(s)	37, 396, 544
Sau96I	GGNCC	3 cut(s)	284, 388, 389
SduI	GDGCHC	3 cut(s)	392, 446, 479
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
Sse9I	AATT	5 cut(s)	488, 495, 549, 566, 776
SsiI	CCGC	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	2 cut(s)	174, 845
TaiI	ACGT	2 cut(s)	35, 931
TaqI	TCGA	1 cut(s)	125
TasI	AATT	5 cut(s)	488, 495, 549, 566, 776
TfiI	GAWTC	2 cut(s)	800, 866
TscAI	CASTG	1 cut(s)	179
TseI	GCWGC	7 cut(s)	7, 55, 76, 106, 310, 329, 355
TspDTI	ATGAA	2 cut(s)	741, 939
TspGWI	ACGGA	2 cut(s)	297, 660
TspRI	CASTG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.