Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

30746388 .. 30747213

Gene Structure 826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37934

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAACTCTTGGTAAAAATGGTTCTTGTGAGATTAAATGGGGTGGCAATTTTACTAAACAAGGATCATTGGATTATGGTGCAGCCTTTGGGTTTGGACTTTACATTAATCACCATTATCACTTTGGGTTACTTTCTGTATGGGATTTCGGTGCTTGCTAAGATTGAACTGGAATGGGAGATGAGGTATGAGCCTCAAGTTGATTCACTTGCCGCAGATTTCATGAACCTAGACAAGAGGACAGATTTCTATTATTCCCTGGTGAGATGCTTTGATTTGTATAGACTGCATTCCTGGGCAGGAGGGGTGAGTTACAAGGAAACAATGCAGGATGGTTATGTAATTTCAAAATTCTGGTTTGAGATTATGGCTATTTGTCTGAGCAGCAGATTATTTCTTAAACTTGAGGTCAAGTTTCAATTGAAGAGGGGTGGTGTTGTTAGGACCCAACTATGTGATCAACCGAGCCCAAACTTGTATCCAGGCCCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

164

Amino Acids

19.1

Weight (kDa)

7.67

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	42 - 107	6.8e-16	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	167, 348, 419, 424
AjnI	CCWGG	3 cut(s)	258, 293, 481
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	2 cut(s)	82, 384
ApoI	RAATTY	1 cut(s)	350
AseI	ATTAAT	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	444, 485
AsuHPI	GGTGA	3 cut(s)	103, 274, 319
AvaII	GGWCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	94, 396
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	3 cut(s)	260, 295, 483
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	1 cut(s)	457
BfaI	CTAG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	3 cut(s)	83, 213, 385
BlsI	GCNGC	3 cut(s)	84, 214, 386
Bme1390I	CCNGG	3 cut(s)	260, 295, 483
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	444, 485
BmiI	GGNNCC	1 cut(s)	446
BmrFI	CCNGG	3 cut(s)	260, 295, 483
BmsI	GCATC	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	180, 425
BsaJI	CCNNGG	2 cut(s)	258, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bse1I	ACTGG	1 cut(s)	174
BseBI	CCWGG	3 cut(s)	260, 295, 483
BseDI	CCNNGG	2 cut(s)	258, 294
BseGI	GGATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	94, 396
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	2 cut(s)	64, 457
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	258, 294
BssMI	GATC	2 cut(s)	64, 457
Bst2UI	CCWGG	3 cut(s)	260, 295, 483
Bst6I	CTCTTC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	159, 380
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	67, 460
BstMBI	GATC	2 cut(s)	64, 457
BstNI	CCWGG	3 cut(s)	260, 295, 483
BstSCI	CCNGG	3 cut(s)	258, 293, 481
BstV1I	GCAGC	2 cut(s)	94, 396
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	444, 485
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	5 cut(s)	85, 193, 371, 468, 486
CviKI_1	RGCY	5 cut(s)	85, 193, 371, 468, 486
DdeI	CTNAG	2 cut(s)	159, 380
DpnI	GATC	2 cut(s)	66, 459
DpnII	GATC	2 cut(s)	64, 457
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRII	CCWGG	3 cut(s)	258, 293, 481
EcoT38I	GRGCYC	1 cut(s)	470
FaeI	CATG	1 cut(s)	226
FaiI	YATR	8 cut(s)	77, 141, 189, 224, 282, 339, 368, 454
FatI	CATG	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	3 cut(s)	83, 213, 385
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	83, 213, 385
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	3 cut(s)	83, 213, 385
HaeIII	GGCC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	3 cut(s)	103, 274, 319
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	82, 289, 328
HpyF3I	CTNAG	2 cut(s)	159, 380
Hsp92II	CATG	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	64, 457
LpnPI	CCDG	9 cut(s)	155, 245, 272, 280, 285, 307, 314, 340, 468
Lsp1109I	GCAGC	2 cut(s)	94, 396
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	128, 311
MalI	GATC	2 cut(s)	66, 459
MboI	GATC	2 cut(s)	64, 457
MboII	GAAGA	1 cut(s)	436
MfeI	CAATTG	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	4 cut(s)	48, 342, 350, 419
MnlI	CCTC	6 cut(s)	177, 204, 231, 296, 400, 420
MseI	TTAA	3 cut(s)	35, 107, 399
MspR9I	CCNGG	3 cut(s)	260, 295, 483
MunI	CAATTG	1 cut(s)	419
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	3 cut(s)	260, 295, 483
NdeII	GATC	2 cut(s)	64, 457
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	446
PagI	TCATGA	1 cut(s)	222
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	84, 214, 386
PpuMI	RGGWCCY	1 cut(s)	444
PshBI	ATTAAT	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	3 cut(s)	258, 293, 481
PspGI	CCWGG	3 cut(s)	258, 293, 481
PspN4I	GGNNCC	1 cut(s)	446
PspPI	GGNCC	2 cut(s)	444, 485
PspPPI	RGGWCCY	1 cut(s)	444
PsrI	GAACNNNNNNTAC	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	35, 107, 399
SatI	GCNGC	3 cut(s)	83, 213, 385
Sau3AI	GATC	2 cut(s)	64, 457
Sau96I	GGNCC	2 cut(s)	444, 485
ScrFI	CCNGG	3 cut(s)	260, 295, 483
SduI	GDGCHC	1 cut(s)	470
SetI	ASST	3 cut(s)	188, 231, 411
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	1 cut(s)	444
SmlI	CTYRAG	2 cut(s)	195, 404
SmoI	CTYRAG	2 cut(s)	195, 404
Sse9I	AATT	4 cut(s)	48, 342, 350, 419
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	258, 293, 481
TasI	AATT	4 cut(s)	48, 342, 350, 419
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	3 cut(s)	35, 107, 399
Tru9I	TTAA	3 cut(s)	35, 107, 399
TseI	GCWGC	2 cut(s)	82, 384
TspDTI	ATGAA	3 cut(s)	17, 211, 239
VpaK11BI	GGWCC	1 cut(s)	444
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.