Rroxscaffold_4G00290700

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000779
Physical Location & Seq
Reverse (-)
11260255 .. 11266867
6613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290700.1

Sequence Viewer

Length: 1332 bp
ATGGCCCTTCTACCTAACTATGCACTGAAGAGTCTATTGCATCAATGGTGTGAGGAAAACAAGTGCTTGGTCTCCCTCTCACGTGCTTTTGAAATTGCATTTGGTGGGAAGAAGGTGCATGTCTCTCAACTTGAAGGGAAGAAAACTGTCCATAACAATGTTGCTGAAGTTATTGCGGACATTGATGGCAAACTCTATGATATCTCGGTTATTATGCAGTTGGTGATGGTTTTGTCCACTAGGCCTATGGATGAAGTGAAGGGCATCATGTGTATCATGCATGAATCTCTAGCAGGTAATCCAATCGGGAGATTTGATCAATTCAAATTCAAAGCATTTGTTTTGATGATCACTTCGAGGGTAAGCTACCTTGCAAGTGGTTGTCCGGGCTTCCATTTTCCGGAATGGAATTTCTCATATGCAGGTTGGTTGATTGCAAAAGGTGTCGGGGATATCATGGATCCCGATTCCTCTTCCGGTGGCGGAGCGGACTTGTTGGAGAGGGTTCGCGACGACGTGGGGATCGGCTATGCTCGGATCCGATTGGAAACCACCGATCTGGTTTGGGATGCTAGGATCCGATCCGTAGATCGTGGTGGCGGGCGGGCTAGAGATCCTTGCGGCATTTGGAGAATGATGGCCGGAGGGAGCGATGGCCCGCGTTCGCTCGGTGCTCGGCCGGGGACGAAGGAGATGCTGCCGGTGGTGGGATGGTGCGGATGTGCGGGCGGGGATGCGGTATCACGGCCTCGCCGTTTGGACACTTTGCATAGCGCTGCTTGGGGTCGCCGTTTTGGTTACCATCATGGCCAAGAAGAACAAGAAAATCGCCATCACGACCAGAAAACGTACAAGAAAATTGACAAGGCAGAGGTGGACGTACAGTATGCTACACTATCCGGAGATAGATTTGTTAAAGTTAATGATGCAAACATAGGGAAGCATGCTGAACCCTACTTAGTGTCAATGGCAAAGCATGGCGAGAAATTGACAATTGGATCTCAATTCTTCATCACATTTTTTAGTTTACCTCATCTCGATGGGAAACACGTTGTTTTTGGCAAGGTTGTGGAAGGATTCAAGGTACTCTATGAGATGGAGGACGTCTTAACAACTTTTGGAAAACCAAACGTGCCCGTAGTCATTGTAGAATGTGGAGAAAATGTGCAAGAGACAAATGCTAGGAAGAGAATACATTTGATTGGACTCGGTAATGTCAAAGTGAGGAGGGGATGGCATTTTATATTGCTGGAAGCCAAATTCCTAGATTATGATCTTGGTTGCCACTTCAGTTCTCATTTTAATAGGGGTTTAATTTTGAGTCTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

443

Amino Acids

49.38

Weight (kDa)

8.28

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 295 - 386 2.2e-19 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1107
Acc36I ACCTGC 2 cut(s) 284, 413
AccBSI CCGCTC 1 cut(s) 488
AccII CGCG 2 cut(s) 510, 661
AccIII TCCGGA 2 cut(s) 400, 899
AcoI YGGCCR 3 cut(s) 639, 677, 808
AcsI RAATTY 3 cut(s) 326, 409, 1259
AcuI CTGAAG 3 cut(s) 47, 186, 1273
AcvI CACGTG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 1104
AfaI GTAC 3 cut(s) 851, 882, 1086
AfeI AGCGCT 1 cut(s) 775
AfiI CCNNNNNNNGG 2 cut(s) 400, 707
AflIII ACRYGT 1 cut(s) 1048
AgsI TTSAA 5 cut(s) 92, 134, 325, 331, 1081
AjiI CACGTC 1 cut(s) 517
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 4 cut(s) 76, 127, 1166, 1328
Aor13HI TCCGGA 2 cut(s) 400, 899
Aor51HI AGCGCT 1 cut(s) 775
AoxI GGCC 7 cut(s) 3, 242, 639, 655, 677, 746, 808
ApeKI GCWGC 2 cut(s) 697, 776
ApoI RAATTY 3 cut(s) 326, 409, 1259
AspLEI GCGC 1 cut(s) 776
AspS9I GGNCC 2 cut(s) 4, 656
AsuC2I CCSGG 2 cut(s) 387, 681
AsuHPI GGTGA 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 1137
BalI TGGCCA 1 cut(s) 810
BamHI GGATCC 3 cut(s) 460, 537, 576
BbrPI CACGTG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 2 cut(s) 684, 763
BceAI ACGGC 3 cut(s) 738, 761, 774
BcgI CGANNNNNNTGC 2 cut(s) 676, 710
BclI TGATCA 2 cut(s) 316, 348
BcnI CCSGG 2 cut(s) 387, 681
BcoDI GTCTC 4 cut(s) 76, 127, 1166, 1328
BfaI CTAG 6 cut(s) 240, 290, 573, 609, 1182, 1265
BfoI RGCGCY 1 cut(s) 777
BfuAI ACCTGC 2 cut(s) 284, 413
BisI GCNGC 3 cut(s) 622, 698, 777
BlsI GCNGC 3 cut(s) 623, 699, 778
Bme1390I CCNGG 2 cut(s) 387, 681
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 2 cut(s) 4, 656
BmiI GGNNCC 3 cut(s) 462, 539, 578
BmrFI CCNGG 2 cut(s) 387, 681
BmsI GCATC 6 cut(s) 49, 273, 559, 684, 724, 916
BpuMI CCSGG 2 cut(s) 387, 681
BsaAI YACGTR 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 1272
BsaHI GRCGYC 1 cut(s) 1104
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 680
BsaWI WCCGGW 3 cut(s) 400, 476, 899
BsaXI ACNNNNNCTCC 2 cut(s) 1149, 1179
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 707
Bse118I RCCGGY 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 1272
BseAI TCCGGA 2 cut(s) 400, 899
BseDI CCNNGG 1 cut(s) 680
BseGI GGATG 6 cut(s) 256, 574, 716, 725, 739, 1238
BseJI GATNNNNATC 1 cut(s) 1272
BseLI CCNNNNNNNGG 2 cut(s) 400, 707
BseRI GAGGAG 1 cut(s) 1240
BseSI GKGCMC 1 cut(s) 1137
BseX3I CGGCCG 1 cut(s) 677
BseXI GCAGC 2 cut(s) 684, 763
Bsh1236I CGCG 2 cut(s) 510, 661
Bsh1285I CGRYCG 1 cut(s) 680
BshFI GGCC 7 cut(s) 5, 244, 641, 657, 679, 748, 810
BsiEI CGRYCG 1 cut(s) 680
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 7 cut(s) 386, 401, 477, 642, 680, 701, 900
BslFI GGGAC 1 cut(s) 697
BslI CCNNNNNNNGG 2 cut(s) 400, 707
BsmAI GTCTC 4 cut(s) 76, 127, 1166, 1328
BsmFI GGGAC 1 cut(s) 697
BsnI GGCC 7 cut(s) 5, 244, 641, 657, 679, 748, 810
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 676, 1137
Bsp13I TCCGGA 2 cut(s) 400, 899
Bsp68I TCGCGA 1 cut(s) 510
BspANI GGCC 7 cut(s) 5, 244, 641, 657, 679, 748, 810
BspEI TCCGGA 2 cut(s) 400, 899
BspFNI CGCG 2 cut(s) 510, 661
BspLI GGNNCC 3 cut(s) 462, 539, 578
BspMI ACCTGC 2 cut(s) 284, 413
BspTNI GGTCTC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 488
BsrFI RCCGGY 1 cut(s) 700
BssAI RCCGGY 1 cut(s) 700
BssECI CCNNGG 1 cut(s) 680
BssNI GRCGYC 1 cut(s) 1104
Bst4CI ACNGT 2 cut(s) 148, 885
Bst6I CTCTTC 3 cut(s) 23, 478, 1181
BstACI GRCGYC 1 cut(s) 1104
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 5 cut(s) 602, 606, 659, 727, 945
BstDEI CTNAG 1 cut(s) 958
BstEII GGTNACC 1 cut(s) 797
BstF5I GGATG 6 cut(s) 256, 574, 716, 725, 739, 1238
BstFNI CGCG 2 cut(s) 510, 661
BstH2I RGCGCY 1 cut(s) 777
BstHHI GCGC 1 cut(s) 776
BstMAI GTCTC 4 cut(s) 76, 127, 1166, 1328
BstMCI CGRYCG 1 cut(s) 680
BstNSI RCATGY 2 cut(s) 122, 947
BstPI GGTNACC 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 385, 679
BstSLI GKGCMC 1 cut(s) 1137
BstUI CGCG 2 cut(s) 510, 661
BstV1I GCAGC 2 cut(s) 684, 763
BstX2I RGATCY 5 cut(s) 460, 537, 576, 613, 998
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 5 cut(s) 460, 537, 576, 613, 998
BstZI CGGCCG 1 cut(s) 677
BsuRI GGCC 7 cut(s) 5, 244, 641, 657, 679, 748, 810
BtgZI GCGATG 1 cut(s) 666
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 6 cut(s) 256, 574, 716, 725, 739, 1238
BtsIMutI CAGTG 1 cut(s) 23
BtuMI TCGCGA 1 cut(s) 510
BveI ACCTGC 2 cut(s) 284, 413
Cac8I GCNNGC 5 cut(s) 602, 606, 659, 727, 945
CfoI GCGC 1 cut(s) 776
Cfr10I RCCGGY 1 cut(s) 700
Cfr13I GGNCC 2 cut(s) 4, 656
Csp6I GTAC 3 cut(s) 850, 881, 1085
CviAII CATG 8 cut(s) 119, 268, 277, 281, 457, 806, 944, 977
CviQI GTAC 3 cut(s) 850, 881, 1085
DdeI CTNAG 1 cut(s) 958
EaeI YGGCCR 3 cut(s) 639, 677, 808
EagI CGGCCG 1 cut(s) 677
Eam1104I CTCTTC 3 cut(s) 23, 478, 1181
EarI CTCTTC 3 cut(s) 23, 478, 1181
EciI GGCGGA 1 cut(s) 498
EclXI CGGCCG 1 cut(s) 677
Eco147I AGGCCT 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 76
Eco32I GATATC 2 cut(s) 202, 454
Eco47III AGCGCT 1 cut(s) 775
Eco52I CGGCCG 1 cut(s) 677
Eco57I CTGAAG 3 cut(s) 47, 186, 1273
Eco72I CACGTG 1 cut(s) 83
Eco91I GGTNACC 1 cut(s) 797
EcoO65I GGTNACC 1 cut(s) 797
EcoRV GATATC 2 cut(s) 202, 454
EcoT22I ATGCAT 1 cut(s) 282
FaeI CATG 8 cut(s) 122, 271, 280, 284, 460, 809, 947, 980
FaqI GGGAC 1 cut(s) 697
FatI CATG 8 cut(s) 118, 267, 276, 280, 456, 805, 943, 976
FauI CCCGC 5 cut(s) 593, 597, 666, 718, 722
FauNDI CATATG 1 cut(s) 418
FbaI TGATCA 2 cut(s) 316, 348
Fnu4HI GCNGC 3 cut(s) 622, 698, 777
FokI GGATG 6 cut(s) 263, 581, 723, 732, 746, 1245
Fsp4HI GCNGC 3 cut(s) 622, 698, 777
FspBI CTAG 6 cut(s) 240, 290, 573, 609, 1182, 1265
GlaI GCGC 1 cut(s) 775
GluI GCNGC 3 cut(s) 622, 698, 777
HaeII RGCGCY 1 cut(s) 777
HaeIII GGCC 7 cut(s) 5, 244, 641, 657, 679, 748, 810
HapII CCGG 7 cut(s) 386, 401, 477, 642, 680, 701, 900
HhaI GCGC 1 cut(s) 776
Hin1I GRCGYC 1 cut(s) 1104
Hin1II CATG 8 cut(s) 122, 271, 280, 284, 460, 809, 947, 980
Hin6I GCGC 1 cut(s) 774
HinP1I GCGC 1 cut(s) 774
HinfI GANTC 6 cut(s) 31, 284, 467, 1077, 1206, 1321
HpaII CCGG 7 cut(s) 386, 401, 477, 642, 680, 701, 900
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 3 cut(s) 237, 877, 1028
Hpy188I TCNGA 3 cut(s) 537, 542, 581
Hpy188III TCNNGA 8 cut(s) 307, 401, 464, 509, 836, 900, 1037, 1325
Hpy8I GTNNAC 3 cut(s) 237, 877, 1028
Hpy99I CGWCG 2 cut(s) 515, 518
HpyAV CCTTC 6 cut(s) 17, 106, 128, 253, 682, 1067
HpyCH4III ACNGT 2 cut(s) 148, 885
HpyCH4IV ACGT 7 cut(s) 82, 516, 848, 879, 1050, 1104, 1131
HpyF3I CTNAG 1 cut(s) 958
HpySE526I ACGT 7 cut(s) 82, 516, 848, 879, 1050, 1104, 1131
Hsp92I GRCGYC 1 cut(s) 1104
Hsp92II CATG 8 cut(s) 122, 271, 280, 284, 460, 809, 947, 980
HspAI GCGC 1 cut(s) 774
Kpn2I TCCGGA 2 cut(s) 400, 899
Ksp22I TGATCA 2 cut(s) 316, 348
LmnI GCTCC 2 cut(s) 485, 648
Lsp1109I GCAGC 2 cut(s) 684, 763
LweI GCATC 6 cut(s) 49, 273, 559, 684, 724, 916
MaeI CTAG 6 cut(s) 240, 290, 573, 609, 1182, 1265
MaeII ACGT 7 cut(s) 82, 516, 848, 879, 1050, 1104, 1131
MaeIII GTNAC 1 cut(s) 797
MbiI CCGCTC 1 cut(s) 488
MboII GAAGA 7 cut(s) 40, 121, 151, 465, 827, 1000, 1198
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 5 cut(s) 460, 537, 576, 613, 998
MhlI GDGCHC 2 cut(s) 676, 1137
MlsI TGGCCA 1 cut(s) 810
MluNI TGGCCA 1 cut(s) 810
MlyI GAGTC 3 cut(s) 40, 1200, 1330
MmeI TCCRAC 1 cut(s) 477
Mox20I TGGCCA 1 cut(s) 810
Mph1103I ATGCAT 1 cut(s) 282
MroI TCCGGA 2 cut(s) 400, 899
MscI TGGCCA 1 cut(s) 810
MseI TTAA 5 cut(s) 915, 921, 1109, 1302, 1313
MslI CAYNNNNRTG 2 cut(s) 156, 1038
Msp20I TGGCCA 1 cut(s) 810
MspI CCGG 7 cut(s) 386, 401, 477, 642, 680, 701, 900
MspR9I CCNGG 2 cut(s) 387, 681
MunI CAATTG 1 cut(s) 993
MvnI CGCG 2 cut(s) 510, 661
NciI CCSGG 2 cut(s) 387, 681
NdeI CATATG 1 cut(s) 418
NlaIII CATG 8 cut(s) 122, 271, 280, 284, 460, 809, 947, 980
NlaIV GGNNCC 3 cut(s) 462, 539, 578
NmeAIII GCCGAG 1 cut(s) 655
NruI TCGCGA 1 cut(s) 510
NsiI ATGCAT 1 cut(s) 282
NspI RCATGY 2 cut(s) 122, 947
PaeI GCATGC 1 cut(s) 947
PceI AGGCCT 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 751
PfeI GAWTC 3 cut(s) 284, 467, 1077
PkrI GCNGC 3 cut(s) 623, 699, 778
PleI GAGTC 3 cut(s) 39, 1200, 1329
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
PpsI GAGTC 3 cut(s) 39, 1200, 1329
Ppu21I YACGTR 1 cut(s) 83
PspCI CACGTG 1 cut(s) 83
PspEI GGTNACC 1 cut(s) 797
PspN4I GGNNCC 3 cut(s) 462, 539, 578
PspPI GGNCC 2 cut(s) 4, 656
PsuI RGATCY 5 cut(s) 460, 537, 576, 613, 998
RruI TCGCGA 1 cut(s) 510
RsaI GTAC 3 cut(s) 851, 882, 1086
RsaNI GTAC 3 cut(s) 850, 881, 1085
RseI CAYNNNNRTG 2 cut(s) 156, 1038
SaqAI TTAA 5 cut(s) 915, 921, 1109, 1302, 1313
SatI GCNGC 3 cut(s) 622, 698, 777
Sau96I GGNCC 2 cut(s) 4, 656
SchI GAGTC 3 cut(s) 40, 1200, 1330
ScrFI CCNGG 2 cut(s) 387, 681
SduI GDGCHC 2 cut(s) 676, 1137
SfaNI GCATC 6 cut(s) 49, 273, 559, 684, 724, 916
SmiMI CAYNNNNRTG 2 cut(s) 156, 1038
SphI GCATGC 1 cut(s) 947
SseBI AGGCCT 1 cut(s) 244
SspMI CTAG 6 cut(s) 240, 290, 573, 609, 1182, 1265
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 385, 679
TaaI ACNGT 2 cut(s) 148, 885
TaiI ACGT 7 cut(s) 85, 519, 851, 882, 1053, 1107, 1134
TaqI TCGA 3 cut(s) 356, 1038, 1326
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 3 cut(s) 284, 467, 1077
Tru1I TTAA 5 cut(s) 915, 921, 1109, 1302, 1313
Tru9I TTAA 5 cut(s) 915, 921, 1109, 1302, 1313
TscAI CASTG 1 cut(s) 30
TseI GCWGC 2 cut(s) 697, 776
TspDTI ATGAA 3 cut(s) 267, 297, 1000
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 1 cut(s) 30
XapI RAATTY 3 cut(s) 326, 409, 1259
XceI RCATGY 2 cut(s) 122, 947
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XspI CTAG 6 cut(s) 240, 290, 573, 609, 1182, 1265
ZraI GACGTC 1 cut(s) 1105
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.