Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003340.1

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Reverse (-)

17520 .. 20777

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003340.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

atggcgacggaacagactttattcaagtctgagatattaaacgagttgagacaactgagactggggctaacagctcaggtgattgagccttcggtgcttcaaatcgattctcagtcgacttctccagtaccaatcatatctccatcagtgactcaacctatctctcaggtgctgcaattcgagaccatggattcctacggaccgcaacaacagcattacatgaggccgtcgccgccaccaccaccactaccgaccatttcggttccctaccactatcagcagcaaggcgctgaacaagattgggcagccaaggctagggcatgggcagctaggacgaaaatggattaccaggataagcaatcgcaatatactttagctggccaaccagaagaacaaattgggtcgcttccctcttcacaatcggtgagtatggtaactctcactttgcctactgagtctatgttaccatactcacctgcacttgttgtggttgattctggagtgagtattagtagaggtaagggtaaaaggatagatgatggtcgtaattgtaacttgggtacttctttgggtacaaataagcttattagtgatgctttgaaatctggggaaggtagtacggaacggcaacatgctaagtctcagttaagtaccatggagatgactgcttgtatggtgaagaacgaacattttggttgtaaaattggtaaaaatgatgagcctgcacttctaggttctttatcacagctaccggaatccatcaaatcagtgagctcgctgccgccgccgtcaattcagacttcttcaggaccagctcagttgatgtctccaactagaagtcttgtaccagaggagggagatgtcgtccaaaagaagactggtgaacttacagagcttgataatatatctacgttggtaggaaattactttcagtatgccttacctaagtgttgtgggtatggaagggatattggtacatgttctgtggtaaatgtttttaatgcattgtgtgtgctcacgcattacattgagagtccaaagaagattagtcactatgtactgcaactatgcttctctggatttgataagaaggttcgtgataaaggtagtactctcttaacaaatgaactttttatggagtactttgcagggacaatggcatctggtaatagcttgaaatttaccatttcactaataatgactttgattgaattatggagttatggatatgttgagaaaaatataagatggtttaccaaaatttcagtgattagttttggaaatggatgctttgatttccaccatgggcttatctcttgtggcattgaattcaatagtttcttggtgaatagaaatgatggacacatagttgttctatgccccaacatgttcagagatggggttaatttggagtatcagtgggaaacaaaaggatctgggcatttgcttatggtggctcgtcctctgcatgtgaagcttcttaagaatgatgtaccggtttcgaatcagttctatgggtttgtaaaggagttggagaaagcacttgctattttgcttgtgagtttgctcaaaattacggcagatattagaaagcagattgagcttcttcacgggcaagcgaaaagggcagagttgtatattgaccttaaggaggtgaaaaggagagaagagcttctggtattgatggggagcaacaatgagaggaacaagaagaacaaagagtctatagacttggttattaaggaagttattgattttgtccagatcaactcagagttctcatcttcgaggtacttttctggtctagttgttccaataactacttttgttattcaagctgtgcttgttggaaatgtctcacatgtttttggaattttgagtgtttttcttgtcaataaactgaatcacaagaaggaatcacttgaggttatttgccttgcgaccatcttctttgttacttatgtattgtctttacatatgcaacttgtggacaaatgtatgccacctcaaatagtggagtttactgaacattacataacaaagaaagagttggtcactttttggatttgggttcctacagcactgtcaagttcaaaagtttggatacttaacttgcatggtttgattgtgatcgagggtcatctattaattggtgacatattccggataagagagcttattttttatattgaatctcatatcactcccactggagcaattgctactggacttgttttctactctagtgaagacttgcacattaccaactcagattcacatatggctcactataacatgtgtttgcggcacaccaagtgcaaggtgagggatataataagcaacatttgtttgagaagctcaatgacttatgaggaagagatttcaaagctagaggcagaagctcagaagcaaacagggagtgacttcacactgcaaggttctacactctgtaatagatattatgatcgttcctcgtcttctcaatccataattgtcaagatctcagatgaatttcgattccccaaaagtggaaacgagcttattcacgtagcccttatacctaactatgcactgaagagtctattgcatcaatgttccagaagttggatcatcaccattatcttcatattcttttacatttctattataaaagctgcaaatgatactgtgaagttaacagctgagtttctggtgattcttaatatcgagaactacttttgggacgcaattgagtcatggttaaatggaactcttggtaaaaatggttcttgtgagattaaatggggtggcaattttactaaacaaggatcattggattatggtgcagactttgggtttggactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009610 GO:0009617 GO:0009620 GO:0009877 GO:0009987 GO:0010033 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0036377 GO:0042221 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

948

Amino Acids

106.13

Weight (kDa)

6.6

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2648
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	2604
AccI	GTMKAC	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	2163
AciI	CCGC	5 cut(s)	203, 233, 782, 785, 2305
AclWI	GGATC	3 cut(s)	1441, 2615, 2815
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	5 cut(s)	1178, 1260, 1328, 1872, 2510
AcuI	CTGAAG	2 cut(s)	789, 2594
AdeI	CACNNNGTG	1 cut(s)	2316
AfiI	CCNNNNNNNGG	5 cut(s)	315, 854, 1651, 2528, 2604
AflII	CTTAAG	2 cut(s)	1481, 1646
AflIII	ACRYGT	4 cut(s)	977, 1386, 1861, 2295
AgeI	ACCGGT	1 cut(s)	1495
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
Alw21I	GWGCWC	2 cut(s)	776, 1017
Alw26I	GTCTC	6 cut(s)	43, 52, 176, 645, 831, 1861
AlwI	GGATC	3 cut(s)	1441, 2615, 2815
AlwNI	CAGNNNCTG	1 cut(s)	172
Aor13HI	TCCGGA	1 cut(s)	2163
AoxI	GGCC	2 cut(s)	224, 379
ApeKI	GCWGC	6 cut(s)	172, 280, 305, 326, 778, 2654
ApoI	RAATTY	5 cut(s)	1178, 1260, 1328, 1872, 2510
ArsI	GACNNNNNNTTYG	1 cut(s)	2819
AseI	ATTAAT	1 cut(s)	2147
AsiGI	ACCGGT	1 cut(s)	1495
Asp700I	GAANNNNTTC	2 cut(s)	1508, 1671
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	200, 809
AsuII	TTCGAA	1 cut(s)	1502
AvaII	GGWCC	2 cut(s)	200, 809
BalI	TGGCCA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	3 cut(s)	881, 2256, 2469
Bbv12I	GWGCWC	2 cut(s)	776, 1017
BbvI	GCAGC	6 cut(s)	159, 292, 317, 338, 765, 2641
BccI	CCATC	8 cut(s)	151, 533, 767, 1242, 1352, 1391, 1678, 1952
BceAI	ACGGC	4 cut(s)	211, 641, 772, 1593
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	2097
BcoDI	GTCTC	6 cut(s)	43, 52, 176, 645, 831, 1861
BfaI	CTAG	7 cut(s)	315, 330, 731, 834, 1805, 2244, 2390
BfmI	CTRYAG	2 cut(s)	1725, 2076
BfoI	RGCGCY	1 cut(s)	291
BfrI	CTTAAG	2 cut(s)	1481, 1646
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	2097
BglII	AGATCT	1 cut(s)	2499
BmcAI	AGTACT	2 cut(s)	1111, 1142
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	200, 809
BmgT120I	GGNCC	2 cut(s)	200, 809
BmiI	GGNNCC	2 cut(s)	264, 2073
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	4 cut(s)	583, 1169, 1277, 2596
BmuI	ACTGGG	1 cut(s)	71
BpiI	GAAGAC	3 cut(s)	881, 2256, 2469
BpmI	CTGGAG	3 cut(s)	108, 519, 2232
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	1502
BpuEI	CTTGAG	1 cut(s)	1943
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	2548
BsaBI	GATNNNNATC	1 cut(s)	2129
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	4 cut(s)	186, 309, 654, 1303
BsaWI	WCCGGW	3 cut(s)	751, 1495, 2163
BsaXI	ACNNNNNCTCC	4 cut(s)	849, 879, 1403, 1433
Bsc4I	CCNNNNNNNGG	5 cut(s)	315, 854, 1651, 2528, 2604
Bse118I	RCCGGY	1 cut(s)	1495
Bse1I	ACTGG	5 cut(s)	66, 125, 883, 2215, 2230
Bse8I	GATNNNNATC	1 cut(s)	2129
BseAI	TCCGGA	1 cut(s)	2163
BseBI	CCWGG	1 cut(s)	350
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	4 cut(s)	186, 309, 654, 1303
BseGI	GGATG	1 cut(s)	1292
BseJI	GATNNNNATC	1 cut(s)	2129
BseLI	CCNNNNNNNGG	5 cut(s)	315, 854, 1651, 2528, 2604
BseNI	ACTGG	5 cut(s)	66, 125, 883, 2215, 2230
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	6 cut(s)	159, 292, 317, 338, 765, 2641
BsgI	GTGCAG	3 cut(s)	462, 708, 2844
BshFI	GGCC	2 cut(s)	226, 381
BshTI	ACCGGT	1 cut(s)	1495
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	776, 1017
BsiSI	CCGG	3 cut(s)	752, 1496, 2164
BslFI	GGGAC	2 cut(s)	1165, 2735
BslI	CCNNNNNNNGG	5 cut(s)	315, 854, 1651, 2528, 2604
BsmAI	GTCTC	6 cut(s)	43, 52, 176, 645, 831, 1861
BsmFI	GGGAC	2 cut(s)	1165, 2735
BsnI	GGCC	2 cut(s)	226, 381
Bso31I	GGTCTC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	1502
Bsp1286I	GDGCHC	2 cut(s)	776, 1017
Bsp13I	TCCGGA	1 cut(s)	2163
Bsp143I	GATC	7 cut(s)	1433, 1764, 2130, 2464, 2499, 2607, 2807
Bsp19I	CCATGG	3 cut(s)	186, 654, 1303
BspACI	CCGC	5 cut(s)	203, 233, 782, 785, 2305
BspANI	GGCC	2 cut(s)	226, 381
BspDI	ATCGAT	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	2163
BspLI	GGNNCC	2 cut(s)	264, 2073
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	3 cut(s)	1441, 2615, 2815
BspQI	GCTCTTC	1 cut(s)	1662
BspT104I	TTCGAA	1 cut(s)	1502
BspTI	CTTAAG	2 cut(s)	1481, 1646
BspTNI	GGTCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	1495
BsrI	ACTGG	5 cut(s)	66, 125, 883, 2215, 2230
BssAI	RCCGGY	1 cut(s)	1495
BssECI	CCNNGG	4 cut(s)	186, 309, 654, 1303
BssMI	GATC	7 cut(s)	1433, 1764, 2130, 2464, 2499, 2607, 2807
BssT1I	CCWWGG	4 cut(s)	186, 309, 654, 1303
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	2085, 2668
Bst6I	CTCTTC	4 cut(s)	418, 1662, 2370, 2570
BstAFI	CTTAAG	2 cut(s)	1481, 1646
BstBAI	YACGTR	1 cut(s)	2548
BstBI	TTCGAA	1 cut(s)	1502
BstC8I	GCNNGC	4 cut(s)	379, 723, 776, 1617
BstDSI	CCRYGG	3 cut(s)	186, 654, 1303
BstENI	CCTNNNNNAGG	1 cut(s)	1649
BstF5I	GGATG	1 cut(s)	1292
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	7 cut(s)	1436, 1767, 2133, 2467, 2502, 2610, 2810
BstMAI	GTCTC	6 cut(s)	43, 52, 176, 645, 831, 1861
BstMBI	GATC	7 cut(s)	1433, 1764, 2130, 2464, 2499, 2607, 2807
BstMWI	GCNNNNNNNGC	9 cut(s)	94, 211, 232, 311, 326, 784, 1474, 1600, 1625
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	6 cut(s)	635, 981, 1390, 1472, 1865, 2299
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	1725, 2076
BstV1I	GCAGC	6 cut(s)	159, 292, 317, 338, 765, 2641
BstV2I	GAAGAC	3 cut(s)	881, 2256, 2469
BstX2I	RGATCY	2 cut(s)	1433, 2499
BstYI	RGATCY	2 cut(s)	1433, 2499
Bsu15I	ATCGAT	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	2097
BsuRI	GGCC	2 cut(s)	226, 381
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	3 cut(s)	186, 654, 1303
BtsCI	GGATG	1 cut(s)	1292
BtsI	GCAGTG	1 cut(s)	2429
BtsIMutI	CAGTG	8 cut(s)	153, 774, 1272, 1424, 2081, 2208, 2429, 2570
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	4 cut(s)	379, 723, 776, 1617
CaiI	CAGNNNCTG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	1495
Cfr13I	GGNCC	2 cut(s)	200, 809
ClaI	ATCGAT	1 cut(s)	105
CpoI	CGGWCCG	1 cut(s)	200
CseI	GACGC	1 cut(s)	2732
CspAI	ACCGGT	1 cut(s)	1495
CspI	CGGWCCG	1 cut(s)	200
DpnI	GATC	7 cut(s)	1435, 1766, 2132, 2466, 2501, 2609, 2809
DpnII	GATC	7 cut(s)	1433, 1764, 2130, 2464, 2499, 2607, 2807
DraIII	CACNNNGTG	1 cut(s)	2316
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	4 cut(s)	418, 1662, 2370, 2570
EarI	CTCTTC	4 cut(s)	418, 1662, 2370, 2570
Ecl136II	GAGCTC	1 cut(s)	774
Eco130I	CCWWGG	4 cut(s)	186, 309, 654, 1303
Eco24I	GRGCYC	1 cut(s)	776
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	2 cut(s)	200, 809
Eco53kI	GAGCTC	1 cut(s)	774
Eco57I	CTGAAG	2 cut(s)	789, 2594
EcoICRI	GAGCTC	1 cut(s)	774
EcoNI	CCTNNNNNAGG	1 cut(s)	1649
EcoRI	GAATTC	1 cut(s)	1328
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	4 cut(s)	186, 309, 654, 1303
EcoT22I	ATGCAT	1 cut(s)	1006
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	4 cut(s)	186, 309, 654, 1303
FalI	AAGNNNNNCTT	2 cut(s)	1827, 1859
FaqI	GGGAC	2 cut(s)	1165, 2735
FauNDI	CATATG	2 cut(s)	1977, 2280
FblI	GTMKAC	1 cut(s)	116
FokI	GGATG	1 cut(s)	1299
FriOI	GRGCYC	1 cut(s)	776
FspBI	CTAG	7 cut(s)	315, 330, 731, 834, 1805, 2244, 2390
GlaI	GCGC	1 cut(s)	289
GsuI	CTGGAG	3 cut(s)	108, 519, 2232
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	226, 381
HapII	CCGG	3 cut(s)	752, 1496, 2164
HgaI	GACGC	1 cut(s)	2732
HhaI	GCGC	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	2 cut(s)	117, 2676
HindII	GTYRAC	2 cut(s)	117, 2676
HindIII	AAGCTT	2 cut(s)	581, 1475
HpaI	GTTAAC	1 cut(s)	2676
HpaII	CCGG	3 cut(s)	752, 1496, 2164
Hpy166II	GTNNAC	6 cut(s)	117, 884, 1254, 1990, 2022, 2676
Hpy188I	TCNGA	7 cut(s)	31, 798, 1394, 1774, 2272, 2406, 2506
Hpy8I	GTNNAC	6 cut(s)	117, 884, 1254, 1990, 2022, 2676
Hpy99I	CGWCG	2 cut(s)	10, 232
HpyAV	CCTTC	5 cut(s)	99, 605, 957, 1084, 1906
HpyCH4III	ACNGT	2 cut(s)	2085, 2668
HpyCH4IV	ACGT	2 cut(s)	911, 2547
HpyF10VI	GCNNNNNNNGC	9 cut(s)	94, 211, 232, 311, 326, 784, 1474, 1600, 1625
HpySE526I	ACGT	2 cut(s)	911, 2547
HspAI	GCGC	1 cut(s)	288
Kpn2I	TCCGGA	1 cut(s)	2163
KspAI	GTTAAC	1 cut(s)	2676
Kzo9I	GATC	7 cut(s)	1433, 1764, 2130, 2464, 2499, 2607, 2807
LguI	GCTCTTC	1 cut(s)	1662
LmnI	GCTCC	2 cut(s)	1689, 2213
Lsp1109I	GCAGC	6 cut(s)	159, 292, 317, 338, 765, 2641
LweI	GCATC	4 cut(s)	583, 1169, 1277, 2596
MaeI	CTAG	7 cut(s)	315, 330, 731, 834, 1805, 2244, 2390
MaeII	ACGT	2 cut(s)	911, 2547
MaeIII	GTNAC	9 cut(s)	148, 433, 462, 551, 1049, 1954, 2053, 2153, 2420
MalI	GATC	7 cut(s)	1435, 1766, 2132, 2466, 2501, 2609, 2809
MboI	GATC	7 cut(s)	1433, 1764, 2130, 2464, 2499, 2607, 2807
MfeI	CAATTG	2 cut(s)	2217, 2727
MflI	RGATCY	2 cut(s)	1433, 2499
MhlI	GDGCHC	2 cut(s)	776, 1017
MlsI	TGGCCA	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	6 cut(s)	145, 464, 1042, 1730, 2587, 2741
MmeI	TCCRAC	4 cut(s)	854, 1512, 1828, 2585
Mox20I	TGGCCA	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	1006
MroI	TCCGGA	1 cut(s)	2163
MroXI	GAANNNNTTC	2 cut(s)	1508, 1671
MscI	TGGCCA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	659
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	2681
MspCI	CTTAAG	2 cut(s)	1481, 1646
MspI	CCGG	3 cut(s)	752, 1496, 2164
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	2 cut(s)	2217, 2727
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	9 cut(s)	94, 211, 232, 311, 326, 784, 1474, 1600, 1625
NcoI	CCATGG	3 cut(s)	186, 654, 1303
NdeI	CATATG	2 cut(s)	1977, 2280
NdeII	GATC	7 cut(s)	1433, 1764, 2130, 2464, 2499, 2607, 2807
NlaIV	GGNNCC	2 cut(s)	264, 2073
NmuCI	GTSAC	5 cut(s)	148, 1049, 2053, 2153, 2420
NsiI	ATGCAT	1 cut(s)	1006
NspI	RCATGY	6 cut(s)	635, 981, 1390, 1472, 1865, 2299
NspV	TTCGAA	1 cut(s)	1502
PaqCI	CACCTGC	1 cut(s)	484
PciI	ACATGT	4 cut(s)	977, 1386, 1861, 2295
PciSI	GCTCTTC	1 cut(s)	1662
PdmI	GAANNNNTTC	2 cut(s)	1508, 1671
PflMI	CCANNNNNTGG	1 cut(s)	2604
PinAI	ACCGGT	1 cut(s)	1495
PleI	GAGTC	6 cut(s)	145, 463, 1041, 1729, 2586, 2740
PpsI	GAGTC	6 cut(s)	145, 463, 1041, 1729, 2586, 2740
Ppu21I	YACGTR	1 cut(s)	2548
PscI	ACATGT	4 cut(s)	977, 1386, 1861, 2295
PshBI	ATTAAT	1 cut(s)	2147
PsiI	TTATAA	1 cut(s)	2648
Psp124BI	GAGCTC	1 cut(s)	776
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	264, 2073
PspPI	GGNCC	2 cut(s)	200, 809
PsrI	GAACNNNNNNTAC	2 cut(s)	2749, 2781
PstNI	CAGNNNCTG	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	1433, 2499
PvuII	CAGCTG	1 cut(s)	2681
RseI	CAYNNNNRTG	1 cut(s)	659
Rsr2I	CGGWCCG	1 cut(s)	200
RsrII	CGGWCCG	1 cut(s)	200
SacI	GAGCTC	1 cut(s)	776
SalI	GTCGAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	1662
Sau3AI	GATC	7 cut(s)	1433, 1764, 2130, 2464, 2499, 2607, 2807
Sau96I	GGNCC	2 cut(s)	200, 809
ScaI	AGTACT	2 cut(s)	1111, 1142
SchI	GAGTC	6 cut(s)	145, 464, 1042, 1730, 2587, 2741
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	776, 1017
SfaNI	GCATC	4 cut(s)	583, 1169, 1277, 2596
SfcI	CTRYAG	2 cut(s)	1725, 2076
SfuI	TTCGAA	1 cut(s)	1502
SinI	GGWCC	2 cut(s)	200, 809
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	3 cut(s)	1481, 1646, 1922
SmoI	CTYRAG	3 cut(s)	1481, 1646, 1922
SsiI	CCGC	5 cut(s)	203, 233, 782, 785, 2305
SspMI	CTAG	7 cut(s)	315, 330, 731, 834, 1805, 2244, 2390
SstI	GAGCTC	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	4 cut(s)	186, 309, 654, 1303
TaaI	ACNGT	2 cut(s)	2085, 2668
TaiI	ACGT	2 cut(s)	914, 2550
TaqI	TCGA	8 cut(s)	105, 116, 180, 1502, 1787, 2133, 2515, 2706
TatI	WGTACW	3 cut(s)	1057, 1109, 1140
TauI	GCSGC	4 cut(s)	235, 784, 787, 2308
TscAI	CASTG	8 cut(s)	153, 774, 1272, 1424, 2088, 2215, 2436, 2577
TseFI	GTSAC	5 cut(s)	148, 1049, 2053, 2153, 2420
TseI	GCWGC	6 cut(s)	172, 280, 305, 326, 778, 2654
Tsp45I	GTSAC	5 cut(s)	148, 1049, 2053, 2153, 2420
TspDTI	ATGAA	3 cut(s)	1140, 2523, 2614
TspGWI	ACGGA	3 cut(s)	23, 213, 635
TspRI	CASTG	8 cut(s)	153, 774, 1272, 1424, 2088, 2215, 2436, 2577
Van91I	CCANNNNNTGG	1 cut(s)	2604
Vha464I	CTTAAG	2 cut(s)	1481, 1646
VpaK11BI	GGWCC	2 cut(s)	200, 809
VspI	ATTAAT	1 cut(s)	2147
XagI	CCTNNNNNAGG	1 cut(s)	1649
XapI	RAATTY	5 cut(s)	1178, 1260, 1328, 1872, 2510
XceI	RCATGY	6 cut(s)	635, 981, 1390, 1472, 1865, 2299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	875
XmiI	GTMKAC	1 cut(s)	116
XmnI	GAANNNNTTC	2 cut(s)	1508, 1671
XspI	CTAG	7 cut(s)	315, 330, 731, 834, 1805, 2244, 2390
ZrmI	AGTACT	2 cut(s)	1111, 1142
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.