Rroxscaffold_1G00066940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000779
Physical Location & Seq
Forward (+)
88374990 .. 88375717
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066940.1

Sequence Viewer

Length: 594 bp
ATGGGCTCTATTCCGGCGCAAGCTATTGGTTGTTTCAGCACGATGAAGGAATGTCTTAGTGGCAACTCTCTCACTTTACCTACCGAGTCTACGTTACCATACTTACCTGCACTTGTTGTTGTTGATTCTGGAGTGAGTATTAGTAGAGATAAGGGTAAAATGATAGATGATGGTAGTAATTGTAACTTGGGTACTTCTTTGGGTACAAATAAGCTTATTAGTGATGGTTTGAAATCTAGGGAAGGTAGTACAAAAAGGCAACAGTTTGTTCGAACTCAAGGTTGGGGTACTCCTCCTATCCGGAAGGTTCTTTATCACGCCTCCACCGTCAATTCGGACTTCTTCATGATCAACTCGTTTATGTCTCCAACTAGAGGTCTTGTACTAGGGAAGGGATATGCAAACAAAAATAGGATTGGTGAGCTTGATAACCGGTTGAATGTGGGTTCAAAGAAGATTAGTCATTATGGACTGCAATTATGCTTCTCCGGGTTTGATAAGAAGGTACGTGACAAAGGTGGTGACCACACTCTCCTAACAGATGAATTTTCTATCCCGAATAGAAAGTTTGCAGGGAATATGAGGCTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.46

Weight (kDa)

9.63

Isoelectric Point (pI)

29.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 300
AcsI RAATTY 1 cut(s) 545
AfaI GTAC 6 cut(s) 193, 205, 250, 289, 384, 507
AfiI CCNNNNNNNGG 1 cut(s) 374
AgeI ACCGGT 1 cut(s) 432
AgsI TTSAA 3 cut(s) 232, 439, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 265, 297
AluBI AGCT 3 cut(s) 23, 214, 424
AluI AGCT 3 cut(s) 23, 214, 424
Alw26I GTCTC 1 cut(s) 369
Aor13HI TCCGGA 1 cut(s) 300
ApeKI GCWGC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 545
AsiGI ACCGGT 1 cut(s) 432
AspLEI GCGC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 2 cut(s) 431, 533
AsuII TTCGAA 1 cut(s) 271
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 573
BccI CCATC 2 cut(s) 164, 218
BclI TGATCA 1 cut(s) 348
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 3 cut(s) 237, 372, 386
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 1 cut(s) 587
BlsI GCNGC 1 cut(s) 588
Bme1390I CCNGG 1 cut(s) 490
BmrFI CCNGG 1 cut(s) 490
BpmI CTGGAG 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 490
BsaAI YACGTR 1 cut(s) 509
BsaWI WCCGGW 2 cut(s) 300, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse118I RCCGGY 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 573
BsgI GTGCAG 1 cut(s) 93
BshTI ACCGGT 1 cut(s) 432
BsiSI CCGG 4 cut(s) 14, 301, 433, 489
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 300
Bsp143I GATC 1 cut(s) 348
BspEI TCCGGA 1 cut(s) 300
BspHI TCATGA 1 cut(s) 345
BspMI ACCTGC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 432
BssAI RCCGGY 1 cut(s) 432
BssMI GATC 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 264, 328
BstBAI YACGTR 1 cut(s) 509
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 56
BstEII GGTNACC 1 cut(s) 521
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 1 cut(s) 348
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 488
BstV1I GCAGC 1 cut(s) 573
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 432
Csp6I GTAC 6 cut(s) 192, 204, 249, 288, 383, 506
CspAI ACCGGT 1 cut(s) 432
CviAII CATG 1 cut(s) 346
CviJI RGCY 5 cut(s) 6, 23, 214, 424, 586
CviKI_1 RGCY 5 cut(s) 6, 23, 214, 424, 586
CviQI GTAC 6 cut(s) 192, 204, 249, 288, 383, 506
DdeI CTNAG 1 cut(s) 56
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 8
Eco91I GGTNACC 1 cut(s) 521
EcoO65I GGTNACC 1 cut(s) 521
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 349
FaiI YATR 7 cut(s) 100, 347, 362, 399, 468, 481, 581
FatI CATG 1 cut(s) 345
FbaI TGATCA 1 cut(s) 348
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 587
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 587
FspBI CTAG 3 cut(s) 237, 372, 386
GlaI GCGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 587
GsuI CTGGAG 1 cut(s) 150
HapII CCGG 4 cut(s) 14, 301, 433, 489
HhaI GCGC 1 cut(s) 19
Hin1II CATG 1 cut(s) 349
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 2 cut(s) 86, 125
HpaII CCGG 4 cut(s) 14, 301, 433, 489
HphI GGTGA 2 cut(s) 431, 533
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 4 cut(s) 129, 301, 346, 556
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 5 cut(s) 40, 236, 298, 385, 496
HpyCH4III ACNGT 2 cut(s) 264, 328
HpyCH4IV ACGT 2 cut(s) 92, 508
HpyCH4V TGCA 4 cut(s) 110, 401, 475, 572
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 2 cut(s) 92, 508
Hsp92II CATG 1 cut(s) 349
HspAI GCGC 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 1 cut(s) 348
LpnPI CCDG 7 cut(s) 27, 114, 120, 314, 446, 502, 558
Lsp1109I GCAGC 1 cut(s) 573
MaeI CTAG 3 cut(s) 237, 372, 386
MaeII ACGT 2 cut(s) 92, 508
MaeIII GTNAC 4 cut(s) 93, 182, 509, 521
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 2 cut(s) 334, 466
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 178, 331, 476, 545
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 4 cut(s) 303, 331, 368, 576
MroI TCCGGA 1 cut(s) 300
MspI CCGG 4 cut(s) 14, 301, 433, 489
MspR9I CCNGG 1 cut(s) 490
NciI CCSGG 1 cut(s) 490
NdeII GATC 1 cut(s) 348
NlaIII CATG 1 cut(s) 349
NmuCI GTSAC 2 cut(s) 509, 521
NspV TTCGAA 1 cut(s) 271
PagI TCATGA 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PfeI GAWTC 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 432
PkrI GCNGC 1 cut(s) 588
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 509
PspEI GGTNACC 1 cut(s) 521
RsaI GTAC 6 cut(s) 193, 205, 250, 289, 384, 507
RsaNI GTAC 6 cut(s) 192, 204, 249, 288, 383, 506
SatI GCNGC 1 cut(s) 587
Sau3AI GATC 1 cut(s) 348
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 1 cut(s) 8
SfuI TTCGAA 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 4 cut(s) 178, 331, 476, 545
SspMI CTAG 3 cut(s) 237, 372, 386
StyD4I CCNGG 1 cut(s) 488
TaaI ACNGT 2 cut(s) 264, 328
TaiI ACGT 2 cut(s) 95, 511
TaqI TCGA 1 cut(s) 271
TasI AATT 4 cut(s) 178, 331, 476, 545
TatI WGTACW 2 cut(s) 248, 382
TfiI GAWTC 1 cut(s) 125
TseFI GTSAC 2 cut(s) 509, 521
TseI GCWGC 1 cut(s) 586
Tsp45I GTSAC 2 cut(s) 509, 521
TspDTI ATGAA 3 cut(s) 59, 334, 558
XapI RAATTY 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 89
XspI CTAG 3 cut(s) 237, 372, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.