Rh7AG294100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000779
Physical Location & Seq
Reverse (-)
32101378 .. 32101935
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG294100.1

Sequence Viewer

Length: 558 bp
ATGTCGTTTCATGGTTACTATCCTGGGGATCGTAACAATTGGTATCAGAGCCCATCGATTGGGCCGATGGGGCAAGGGCCACCGGAGTTGTCTGTTGCGGCGGCGCAATATCGGGTTTCACCTGGTTTTGCTCCGACGAGAACGGCGGTGTTGGACGGCAGTTGTGCTCAAACTATTGGTACATACACTGGTTTCTCTCTCTATTCGCATTCGTATACACCACAGATTCCACCACAGCAATACTACCCACCATCACCGCCATCACAATCGTTCACCCAAAATCCTCAATTTCACACTCAGATTAGTAGTATGGTCGATTCCACACACTCCTTTTCCCCAATCCATTCTCATATGACCCATTCCGTTTATTCACTACCACAAACCCCTAATCACCTCCTTTGCAACATCCGAGAAATTTCCATTCACCATGTCAACATCCTCCAACTCCAGGTGAGGTCTATCACCATTACCCACCTACCCAGCCTTATTGCATCCCCACAAATCAGTTTGTTCCTCCACCTTCCACTCATGAGCAACCACATCCTATTTCAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.61

Weight (kDa)

7.24

Isoelectric Point (pI)

67.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 1 cut(s) 215
AciI CCGC 4 cut(s) 98, 101, 146, 257
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 414
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 2 cut(s) 59, 448
AgsI TTSAA 1 cut(s) 551
AjnI CCWGG 3 cut(s) 22, 121, 447
Alw21I GWGCWC 1 cut(s) 169
AlwI GGATC 1 cut(s) 36
AoxI GGCC 2 cut(s) 62, 77
ApoI RAATTY 1 cut(s) 414
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 62, 77
AsuHPI GGTGA 7 cut(s) 111, 246, 265, 383, 416, 454, 463
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 169
BccI CCATC 4 cut(s) 61, 61, 259, 268
BceAI ACGGC 2 cut(s) 159, 172
BciT130I CCWGG 3 cut(s) 24, 123, 449
BglI GCCNNNNNGGC 1 cut(s) 70
BisI GCNGC 2 cut(s) 99, 102
BlsI GCNGC 2 cut(s) 100, 103
Bme1390I CCNGG 3 cut(s) 24, 123, 449
BmgT120I GGNCC 2 cut(s) 62, 77
BmrFI CCNGG 3 cut(s) 24, 123, 449
BmsI GCATC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 431
Bsa29I ATCGAT 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 448
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 3 cut(s) 24, 123, 449
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 4 cut(s) 405, 435, 491, 540
BseLI CCNNNNNNNGG 2 cut(s) 59, 448
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 479
BshFI GGCC 2 cut(s) 64, 79
BshVI ATCGAT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 59, 448
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 64, 79
Bsp1286I GDGCHC 2 cut(s) 53, 169
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 4 cut(s) 98, 101, 146, 257
BspANI GGCC 2 cut(s) 64, 79
BspCNI CTCAG 1 cut(s) 310
BspDI ATCGAT 1 cut(s) 56
BspHI TCATGA 1 cut(s) 528
BspPI GGATC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 1 cut(s) 28
BssNAI GTATAC 1 cut(s) 216
Bst1107I GTATAC 1 cut(s) 216
Bst2UI CCWGG 3 cut(s) 24, 123, 449
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 4 cut(s) 405, 435, 491, 540
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 3 cut(s) 24, 123, 449
BstSCI CCNGG 3 cut(s) 22, 121, 447
BstZ17I GTATAC 1 cut(s) 216
Bsu15I ATCGAT 1 cut(s) 56
BsuRI GGCC 2 cut(s) 64, 79
BsuTUI ATCGAT 1 cut(s) 56
BtsCI GGATG 4 cut(s) 405, 435, 491, 540
BtsIMutI CAGTG 1 cut(s) 186
CciI TCATGA 1 cut(s) 528
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 62, 77
ClaI ATCGAT 1 cut(s) 56
CsiI ACCWGGT 1 cut(s) 121
Csp6I GTAC 1 cut(s) 180
CspCI CAANNNNNGTGG 2 cut(s) 69, 104
CviAII CATG 3 cut(s) 11, 428, 529
CviJI RGCY 4 cut(s) 51, 64, 79, 483
CviKI_1 RGCY 4 cut(s) 51, 64, 79, 483
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 53
EcoRII CCWGG 3 cut(s) 22, 121, 447
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 3 cut(s) 14, 431, 532
FaiI YATR 8 cut(s) 12, 184, 216, 311, 351, 353, 429, 530
FatI CATG 3 cut(s) 10, 427, 528
FauNDI CATATG 1 cut(s) 351
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 99, 102
FokI GGATG 4 cut(s) 392, 422, 478, 527
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 99, 102
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 99, 102
GsaI CCCAGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 2 cut(s) 64, 79
HapII CCGG 1 cut(s) 83
HhaI GCGC 1 cut(s) 106
Hin1II CATG 3 cut(s) 14, 431, 532
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 2 cut(s) 226, 317
HpaII CCGG 1 cut(s) 83
HphI GGTGA 7 cut(s) 111, 246, 265, 383, 416, 454, 463
Hpy166II GTNNAC 3 cut(s) 216, 273, 433
Hpy188I TCNGA 4 cut(s) 48, 135, 300, 410
Hpy188III TCNNGA 1 cut(s) 529
Hpy8I GTNNAC 3 cut(s) 216, 273, 433
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 530
HpyCH4V TGCA 2 cut(s) 402, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 3 cut(s) 14, 431, 532
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 9 cut(s) 9, 36, 96, 108, 135, 174, 434, 461, 493
LweI GCATC 1 cut(s) 500
MabI ACCWGGT 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 14, 32
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MfeI CAATTG 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 53, 169
MluCI AATT 3 cut(s) 37, 287, 414
MmeI TCCRAC 3 cut(s) 132, 158, 466
MnlI CCTC 5 cut(s) 294, 404, 447, 449, 524
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 3 cut(s) 24, 123, 449
MunI CAATTG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 3 cut(s) 24, 123, 449
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeI CATATG 1 cut(s) 351
NdeII GATC 1 cut(s) 28
NlaIII CATG 3 cut(s) 14, 431, 532
PagI TCATGA 1 cut(s) 528
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 226, 317
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 2 cut(s) 100, 103
Psp6I CCWGG 3 cut(s) 22, 121, 447
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 3 cut(s) 22, 121, 447
PspPI GGNCC 2 cut(s) 62, 77
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SatI GCNGC 2 cut(s) 99, 102
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 2 cut(s) 62, 77
ScrFI CCNGG 3 cut(s) 24, 123, 449
SduI GDGCHC 2 cut(s) 53, 169
SetI ASST 6 cut(s) 124, 396, 453, 458, 477, 522
SexAI ACCWGGT 1 cut(s) 121
SfaNI GCATC 1 cut(s) 500
Sse9I AATT 3 cut(s) 37, 287, 414
SsiI CCGC 4 cut(s) 98, 101, 146, 257
StyD4I CCNGG 3 cut(s) 22, 121, 447
TaqI TCGA 2 cut(s) 56, 315
TasI AATT 3 cut(s) 37, 287, 414
TauI GCSGC 2 cut(s) 101, 104
TfiI GAWTC 2 cut(s) 226, 317
TscAI CASTG 1 cut(s) 193
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 59
XapI RAATTY 1 cut(s) 414
XmiI GTMKAC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.