Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

54823653 .. 54823880

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG433000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGACGACGGGCTCCGTTCAAGTGCAAGCTATGGGTTGTTTGAGCACGATGGATGAATATGAAATTAAAGGCATTGAGGTTCCAATAGGTGTGAGCTTGGAGAATGGATTCAATCAACTTGGCCGCGATGTTGAATTGCAATACAAGTATGACAAAGTGTTTGTTGCTGGTGTGAATCCAGAACCAGTGGCCCAACCGTCTTGGTTGTTGAAGCAGACCGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0007186 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043021 GO:0043024 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0060089 GO:0061927 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

75

Amino Acids

8.31

Weight (kDa)

4.36

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	126
AciI	CCGC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	121
AgsI	TTSAA	4 cut(s)	20, 112, 134, 211
AluBI	AGCT	2 cut(s)	29, 96
AluI	AGCT	2 cut(s)	29, 96
Alw21I	GWGCWC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	121, 189
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	47
BccI	CCATC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	13, 81
Bse1I	ACTGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	123, 191
BsiHKAI	GWGCWC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	123, 191
Bsp1286I	GDGCHC	2 cut(s)	14, 47
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	123, 191
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	13, 81
BsrI	ACTGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	123, 191
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	190
CviJI	RGCY	5 cut(s)	12, 29, 96, 123, 191
CviKI_1	RGCY	5 cut(s)	12, 29, 96, 123, 191
EaeI	YGGCCR	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	14
FaiI	YATR	3 cut(s)	32, 60, 150
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	123, 191
HinfI	GANTC	2 cut(s)	108, 175
Hpy188III	TCNNGA	1 cut(s)	179
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	25, 139
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	3 cut(s)	153, 192, 198
MhlI	GDGCHC	2 cut(s)	14, 47
MluCI	AATT	2 cut(s)	63, 134
MnlI	CCTC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	66
MvnI	CGCG	1 cut(s)	126
NlaIV	GGNNCC	2 cut(s)	13, 81
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	108, 175
PkrI	GCNGC	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	13, 81
PspPI	GGNCC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	190
SduI	GDGCHC	2 cut(s)	14, 47
SetI	ASST	4 cut(s)	31, 81, 91, 98
Sse9I	AATT	2 cut(s)	63, 134
SsiI	CCGC	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	198
TasI	AATT	2 cut(s)	63, 134
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	108, 175
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	69, 75
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.