Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Reverse (-)

10237643 .. 10242853

Gene Structure 5211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0077100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGATGGGCTCAAACTCAATCCAAATCCCAATCGCTCTGGCCTATCACACCTCCCCTCCTTCTTCTTCTTCTTCTCTTTCACCTCTCACCTTCTCCCTTCCTCTACTTCCTCGCTCGCCTCTTCATCCCTCTCTACGACGTCGTTTCCAGACTCTCCGCCTCGCAATCCATCGCCGCTCTTCAATTCTCGCCTCCTCCTCCTCCGCCGCCGGCGTCACCAATTCCGCGCCGAGAAATGGAAACTACACCGTCAGCGATTTCATGACCACCAAAGAGCATTTACACGTCGTTAAACCCTCCACAACCGTCGACCAAGCATTGAATTTTCTGGTGGAGAAGAGAATTACCGGTTTTCCTGTGATTGATGATGACTGGAAGCTGGTTGGTGTTGTTTCGGATTATGACTTGTTAGCATTGGACTCCATATCAGGAAATATAGGAGGTGGTAGTCAACATGACACAAACTTATTTCCAGATGTGGACAGTTCTTGGAAGACATTCAATGAAATACAGAAATTGCTTAGCAAAACGAATGGAAAAGTTGTTGGCGACTTGATGACACCTGCTCCACTTGTTGTTCGTGAAACCACCAATCTAGAAGATGCTGCTAGGTTGTTGCTTGCAACAAAATATCGCCGACTGCCAGTTGTAGATAGTGATGGCAAGCTGGTTGGGATCATTACAAGGGGAAATGTTGTTAAAGCTGCCCTTCAGATAAAACGTGGTAGTAAAAAATTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

247

Amino Acids

26.8

Weight (kDa)

9.89

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	84 - 138	9.7e-13	CBS domain
CBS	PF00571	182 - 236	2.3e-17	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	571
AatII	GACGTC	1 cut(s)	142
Acc36I	ACCTGC	1 cut(s)	571
AccBSI	CCGCTC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	227
AciI	CCGC	5 cut(s)	157, 175, 204, 207, 225
AclWI	GGATC	1 cut(s)	683
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	695
AcyI	GRCGYC	2 cut(s)	139, 213
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	283
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	183, 322, 502
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	4 cut(s)	379, 667, 704, 740
AluI	AGCT	4 cut(s)	379, 667, 704, 740
AlwI	GGATC	1 cut(s)	683
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	605, 704
ApoI	RAATTY	1 cut(s)	322
AsiGI	ACCGGT	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	72, 79, 208
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	592, 691
BccI	CCATC	2 cut(s)	177, 653
BfaI	CTAG	2 cut(s)	596, 609
BfuAI	ACCTGC	1 cut(s)	571
BisI	GCNGC	4 cut(s)	175, 207, 606, 705
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	4 cut(s)	176, 208, 607, 706
BmgBI	CACGTC	1 cut(s)	286
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	521
BsaHI	GRCGYC	2 cut(s)	139, 213
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 550, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	2 cut(s)	209, 347
Bse1I	ACTGG	2 cut(s)	377, 644
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseNI	ACTGG	2 cut(s)	377, 644
BseRI	GAGGAG	3 cut(s)	184, 187, 190
BseXI	GCAGC	2 cut(s)	592, 691
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	41
BshTI	ACCGGT	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	210, 348
BslI	CCNNNNNNNGG	1 cut(s)	236
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	675
Bsp1720I	GCTNAGC	1 cut(s)	521
BspACI	CCGC	5 cut(s)	157, 175, 204, 207, 225
BspANI	GGCC	1 cut(s)	41
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	1 cut(s)	683
BspQI	GCTCTTC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	177
BsrFI	RCCGGY	2 cut(s)	209, 347
BsrI	ACTGG	2 cut(s)	377, 644
BssAI	RCCGGY	2 cut(s)	209, 347
BssMI	GATC	1 cut(s)	675
BssNI	GRCGYC	2 cut(s)	139, 213
Bst4CI	ACNGT	3 cut(s)	250, 307, 485
Bst6I	CTCTTC	3 cut(s)	126, 184, 332
BstACI	GRCGYC	2 cut(s)	139, 213
BstC8I	GCNNGC	4 cut(s)	116, 211, 621, 665
BstDEI	CTNAG	2 cut(s)	521, 741
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	678
BstMBI	GATC	1 cut(s)	675
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	592, 691
BstV2I	GAAGAC	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	4 cut(s)	116, 211, 621, 665
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	2 cut(s)	209, 347
CseI	GACGC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	2 cut(s)	262, 455
CviJI	RGCY	6 cut(s)	9, 41, 379, 667, 704, 740
CviKI_1	RGCY	6 cut(s)	9, 41, 379, 667, 704, 740
DdeI	CTNAG	2 cut(s)	521, 741
DpnI	GATC	1 cut(s)	677
DpnII	GATC	1 cut(s)	675
Eam1104I	CTCTTC	3 cut(s)	126, 184, 332
EarI	CTCTTC	3 cut(s)	126, 184, 332
EciI	GGCGGA	2 cut(s)	146, 193
Eco24I	GRGCYC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	695
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	2 cut(s)	265, 458
FaiI	YATR	5 cut(s)	263, 402, 425, 437, 456
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FatI	CATG	2 cut(s)	261, 454
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	175, 207, 606, 705
FokI	GGATG	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	4 cut(s)	175, 207, 606, 705
FspBI	CTAG	2 cut(s)	596, 609
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	4 cut(s)	175, 207, 606, 705
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	210, 348
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	2 cut(s)	139, 213
Hin1II	CATG	2 cut(s)	265, 458
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	2 cut(s)	310, 452
HindII	GTYRAC	2 cut(s)	310, 452
HinfI	GANTC	2 cut(s)	151, 419
HpaII	CCGG	2 cut(s)	210, 348
HphI	GGTGA	3 cut(s)	72, 79, 208
Hpy166II	GTNNAC	3 cut(s)	310, 452, 481
Hpy188I	TCNGA	2 cut(s)	397, 714
Hpy188III	TCNNGA	6 cut(s)	148, 262, 429, 473, 581, 596
Hpy8I	GTNNAC	3 cut(s)	310, 452, 481
Hpy99I	CGWCG	4 cut(s)	141, 144, 290, 311
HpyAV	CCTTC	4 cut(s)	69, 100, 107, 719
HpyCH4III	ACNGT	3 cut(s)	250, 307, 485
HpyCH4IV	ACGT	3 cut(s)	139, 285, 721
HpyCH4V	TGCA	1 cut(s)	623
HpyF3I	CTNAG	2 cut(s)	521, 741
HpySE526I	ACGT	3 cut(s)	139, 285, 721
Hsp92I	GRCGYC	2 cut(s)	139, 213
Hsp92II	CATG	2 cut(s)	265, 458
HspAI	GCGC	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	675
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	2 cut(s)	592, 691
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	596, 609
MaeII	ACGT	3 cut(s)	139, 285, 721
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	677
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	1 cut(s)	675
MboII	GAAGA	9 cut(s)	54, 57, 60, 63, 113, 171, 349, 505, 611
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	6 cut(s)	183, 220, 322, 342, 515, 734
MlyI	GAGTC	2 cut(s)	145, 413
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	2 cut(s)	291, 699
MspI	CCGG	2 cut(s)	210, 348
MvnI	CGCG	1 cut(s)	227
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	1 cut(s)	675
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	265, 458
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	261
PaqCI	CACCTGC	1 cut(s)	571
PciSI	GCTCTTC	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	497
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	4 cut(s)	176, 208, 607, 706
PleI	GAGTC	2 cut(s)	145, 413
PpsI	GAGTC	2 cut(s)	145, 413
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	291, 699
SatI	GCNGC	4 cut(s)	175, 207, 606, 705
Sau3AI	GATC	1 cut(s)	675
SchI	GAGTC	2 cut(s)	145, 413
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	1 cut(s)	592
SgrAI	CRCCGGYG	1 cut(s)	209
Sse9I	AATT	6 cut(s)	183, 220, 322, 342, 515, 734
SsiI	CCGC	5 cut(s)	157, 175, 204, 207, 225
SspMI	CTAG	2 cut(s)	596, 609
TaaI	ACNGT	3 cut(s)	250, 307, 485
TaiI	ACGT	3 cut(s)	142, 288, 724
TaqI	TCGA	1 cut(s)	309
TasI	AATT	6 cut(s)	183, 220, 322, 342, 515, 734
TauI	GCSGC	2 cut(s)	177, 209
Tru1I	TTAA	2 cut(s)	291, 699
Tru9I	TTAA	2 cut(s)	291, 699
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	605, 704
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	113, 250, 519
XapI	RAATTY	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	2 cut(s)	596, 609
ZraI	GACGTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.