Rmu_sc0001648.1_g000043

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001648.1
OG0000779
Physical Location & Seq
Forward (+)
250169 .. 254531
4363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001648.1_g000043.1.cds

Sequence Viewer

Length: 1698 bp
ctgccgtcaattcagacttcttcaggaccagttcagctgaggtctctaactagaagtcttgtatcagaggagagaaatgtcgtcaaaaagaagactggtgaacttacagagcttgataatctatcgactaaggtaggcaattacttccagtatgccttgcataagtgttgtgggtatggaaaggatattagtgcatgttatgtggtgaatgttttcaatgtaatgtgtgtaatgattaagcattacattgagagtccaaagaagattaatcactatgttctgcaagtatgcttctctgggtttgataagaaggtacgtgataaaggtagtggccacactagcttaacagatgaattttctatcctgaatagaaagtttgtagagaatatgaggctaattggtgttgattttcgtgtaatgaacgttgttgttgtagaaaatgccaatgatcttaatgcggctgtcaatgatgtgctgaatgaggttctccttttcttgaacaagcgtcctaaaagtcctccaaatgttcagtctcctagcagccattcaactgcagctgaatttgaagagcagagtaaagaattgattcaccagcaggtggataaggaagtagaggttgagctatttcaaacagcaggattctctgatgttgtatctaaaatcagtgctcatgaggaagaaggaatctattctccatggaatgaggaatattttctagaggaaattgttagtacaagacctaatccaagaaatattgtgcagcaatatgaatattcaaatattggagctaccgaattgattttatcaaatggcatgagagttagctataagagtacagactttgttgatgatcagtttatctttacaagtttctcatatgggggtttggccatacttgttgaaatagagtacttttcttgcatgctggggccaactattgcaggagaaattggtgtatatggttatagaccttcagctttggtcgataagcttgcgtgtaagagggccgaagtcagcacaaagtttggagcatacatgagaatctctaattacaatgccaacaatactgatcaaacaaatttcacaagttggttgtatgttgatctgaggtattgttcttcttcggctatctcaattgttgctactcttcttctttctgtggcattagttatgtgtgttactatttttggtgtgatgaagactatagaaaaagcacacattgatggaattgttgagaaagctaagaagaggcaacttgatgttattttgggattaggtgaggataagtcattttttacaatattgctgcaacatggaattcctatgcaaggagaagaagtgggtgatgtcgctgttttctcaagtgtttggtcggagcttgagtttccggccacctttggcgacaatttttattgggtcttggagctcttggatcatacaaccgtccctcaaaatttcttggtccaattcaaagtatggagcacaaatcgaatgattgaaggtaagctccagcagctgaagcaacaagtgccaaaaagatatgatggaagtgaaagcagcccatcgttgaaggaggtgtggctgtcggaggtgatggtagaggcagagatttttttcctgtcttcagtggtagaggtggtggttcatagaatcgtagtgatcactgggcaagctcctcctacccgatttaccttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

565

Amino Acids

63.62

Weight (kDa)

5.41

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 586
Acc36I ACCTGC 1 cut(s) 586
AccB7I CCANNNNNTGG 1 cut(s) 598
AciI CCGC 1 cut(s) 458
AclI AACGTT 1 cut(s) 423
AclWI GGATC 1 cut(s) 1440
AcoI YGGCCR 3 cut(s) 331, 888, 1389
AcsI RAATTY 5 cut(s) 353, 560, 1078, 1317, 1453
AcuI CTGAAG 4 cut(s) 6, 957, 1538, 1608
AfaI GTAC 4 cut(s) 315, 733, 835, 911
AfiI CCNNNNNNNGG 2 cut(s) 598, 1328
Alw21I GWGCWC 3 cut(s) 670, 1428, 1484
Alw26I GTCTC 2 cut(s) 48, 537
AlwI GGATC 1 cut(s) 1440
AlwNI CAGNNNCTG 1 cut(s) 1516
AoxI GGCC 5 cut(s) 331, 888, 929, 1005, 1389
ApeKI GCWGC 6 cut(s) 540, 554, 760, 1306, 1513, 1557
ApoI RAATTY 5 cut(s) 353, 560, 1078, 1317, 1453
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 4 cut(s) 212, 585, 688, 711
AspS9I GGNCC 4 cut(s) 26, 929, 1005, 1462
AsuHPI GGTGA 6 cut(s) 110, 217, 581, 1289, 1355, 1603
AvaII GGWCC 2 cut(s) 26, 1462
BalI TGGCCA 2 cut(s) 333, 890
BanII GRGCYC 1 cut(s) 1428
BbsI GAAGAC 3 cut(s) 98, 1205, 1614
Bbv12I GWGCWC 3 cut(s) 670, 1428, 1484
BbvCI CCTCAGC 1 cut(s) 38
BbvI GCAGC 6 cut(s) 552, 566, 772, 1293, 1525, 1569
BccI CCATC 4 cut(s) 1217, 1538, 1570, 1588
BcgI CGANNNNNNTGC 2 cut(s) 974, 1008
BclI TGATCA 3 cut(s) 850, 1069, 1659
BcoDI GTCTC 2 cut(s) 48, 537
BfaI CTAG 4 cut(s) 51, 339, 537, 716
BfmI CTRYAG 2 cut(s) 552, 1203
BfuAI ACCTGC 1 cut(s) 586
BisI GCNGC 7 cut(s) 459, 541, 555, 761, 1307, 1514, 1558
BlsI GCNGC 7 cut(s) 460, 542, 556, 762, 1308, 1515, 1559
BmcAI AGTACT 1 cut(s) 911
Bme18I GGWCC 2 cut(s) 26, 1462
BmgT120I GGNCC 4 cut(s) 26, 929, 1005, 1462
BmiI GGNNCC 1 cut(s) 930
BmrI ACTGGG 1 cut(s) 1674
BmuI ACTGGG 1 cut(s) 1674
BpiI GAAGAC 3 cut(s) 98, 1205, 1614
BpmI CTGGAG 1 cut(s) 1493
Bpu10I CCTNAGC 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 1345, 1400
BsaAI YACGTR 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 695
BsaXI ACNNNNNCTCC 4 cut(s) 1323, 1353, 1367, 1397
Bsc4I CCNNNNNNNGG 2 cut(s) 598, 1328
Bse1I ACTGG 4 cut(s) 29, 100, 148, 1669
BseDI CCNNGG 1 cut(s) 695
BseLI CCNNNNNNNGG 2 cut(s) 598, 1328
BseMII CTCAG 2 cut(s) 29, 1097
BseNI ACTGG 4 cut(s) 29, 100, 148, 1669
BseRI GAGGAG 2 cut(s) 83, 1665
BseXI GCAGC 6 cut(s) 552, 566, 772, 1293, 1525, 1569
BseYI CCCAGC 1 cut(s) 925
BsgI GTGCAG 1 cut(s) 779
BshFI GGCC 5 cut(s) 333, 890, 931, 1007, 1391
BsiHKAI GWGCWC 3 cut(s) 670, 1428, 1484
BsiSI CCGG 1 cut(s) 1388
BslFI GGGAC 1 cut(s) 1430
BslI CCNNNNNNNGG 2 cut(s) 598, 1328
BsmAI GTCTC 2 cut(s) 48, 537
BsmFI GGGAC 1 cut(s) 1430
BsnI GGCC 5 cut(s) 333, 890, 931, 1007, 1391
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 3 cut(s) 670, 1428, 1484
Bsp143I GATC 6 cut(s) 448, 850, 1069, 1102, 1432, 1659
Bsp19I CCATGG 1 cut(s) 695
BspACI CCGC 1 cut(s) 458
BspANI GGCC 5 cut(s) 333, 890, 931, 1007, 1391
BspCNI CTCAG 2 cut(s) 30, 1098
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 1 cut(s) 930
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 1 cut(s) 1440
BspQI GCTCTTC 1 cut(s) 561
BspTNI GGTCTC 1 cut(s) 48
BsrI ACTGG 4 cut(s) 29, 100, 148, 1669
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 6 cut(s) 448, 850, 1069, 1102, 1432, 1659
BssT1I CCWWGG 1 cut(s) 695
Bst4CI ACNGT 1 cut(s) 1444
Bst6I CTCTTC 3 cut(s) 561, 1152, 1241
BstAPI GCANNNNNTGC 1 cut(s) 1528
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 3 cut(s) 923, 993, 1671
BstDEI CTNAG 4 cut(s) 38, 129, 1106, 1242
BstDSI CCRYGG 1 cut(s) 695
BstENI CCTNNNNNAGG 1 cut(s) 1326
BstKTI GATC 6 cut(s) 451, 853, 1072, 1105, 1435, 1662
BstMAI GTCTC 2 cut(s) 48, 537
BstMBI GATC 6 cut(s) 448, 850, 1069, 1102, 1432, 1659
BstMWI GCNNNNNNNGC 4 cut(s) 339, 1513, 1519, 1528
BstNSI RCATGY 2 cut(s) 198, 925
BstSFI CTRYAG 2 cut(s) 552, 1203
BstV1I GCAGC 6 cut(s) 552, 566, 772, 1293, 1525, 1569
BstV2I GAAGAC 3 cut(s) 98, 1205, 1614
BsuRI GGCC 5 cut(s) 333, 890, 931, 1007, 1391
BtgI CCRYGG 1 cut(s) 695
BtsIMutI CAGTG 3 cut(s) 670, 1632, 1662
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 3 cut(s) 923, 993, 1671
CaiI CAGNNNCTG 1 cut(s) 1516
CciI TCATGA 1 cut(s) 670
Cfr13I GGNCC 4 cut(s) 26, 929, 1005, 1462
CseI GACGC 1 cut(s) 494
Csp6I GTAC 4 cut(s) 314, 732, 834, 910
CviAII CATG 7 cut(s) 195, 671, 696, 814, 922, 1036, 1313
CviQI GTAC 4 cut(s) 314, 732, 834, 910
DdeI CTNAG 4 cut(s) 38, 129, 1106, 1242
DpnI GATC 6 cut(s) 450, 852, 1071, 1104, 1434, 1661
DpnII GATC 6 cut(s) 448, 850, 1069, 1102, 1432, 1659
EaeI YGGCCR 3 cut(s) 331, 888, 1389
Eam1104I CTCTTC 3 cut(s) 561, 1152, 1241
EarI CTCTTC 3 cut(s) 561, 1152, 1241
Ecl136II GAGCTC 1 cut(s) 1426
Eco130I CCWWGG 1 cut(s) 695
Eco24I GRGCYC 1 cut(s) 1428
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 26, 1462
Eco53kI GAGCTC 1 cut(s) 1426
Eco57I CTGAAG 4 cut(s) 6, 957, 1538, 1608
EcoICRI GAGCTC 1 cut(s) 1426
EcoNI CCTNNNNNAGG 1 cut(s) 1326
EcoRI GAATTC 1 cut(s) 1317
EcoT14I CCWWGG 1 cut(s) 695
EcoT38I GRGCYC 1 cut(s) 1428
ErhI CCWWGG 1 cut(s) 695
FaeI CATG 7 cut(s) 198, 674, 699, 817, 925, 1039, 1316
FaqI GGGAC 1 cut(s) 1430
FatI CATG 7 cut(s) 194, 670, 695, 813, 921, 1035, 1312
FauNDI CATATG 1 cut(s) 877
FbaI TGATCA 3 cut(s) 850, 1069, 1659
Fnu4HI GCNGC 7 cut(s) 459, 541, 555, 761, 1307, 1514, 1558
FriOI GRGCYC 1 cut(s) 1428
Fsp4HI GCNGC 7 cut(s) 459, 541, 555, 761, 1307, 1514, 1558
FspBI CTAG 4 cut(s) 51, 339, 537, 716
GluI GCNGC 7 cut(s) 459, 541, 555, 761, 1307, 1514, 1558
GsaI CCCAGC 1 cut(s) 929
GsuI CTGGAG 1 cut(s) 1493
HaeIII GGCC 5 cut(s) 333, 890, 931, 1007, 1391
HapII CCGG 1 cut(s) 1388
HgaI GACGC 1 cut(s) 494
Hin1II CATG 7 cut(s) 198, 674, 699, 817, 925, 1039, 1316
HindIII AAGCTT 1 cut(s) 989
HinfI GANTC 6 cut(s) 253, 586, 639, 684, 1041, 1650
HpaII CCGG 1 cut(s) 1388
HphI GGTGA 6 cut(s) 110, 217, 581, 1289, 1355, 1603
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 6 cut(s) 15, 67, 646, 1107, 1375, 1588
Hpy188III TCNNGA 5 cut(s) 24, 364, 496, 671, 716
Hpy8I GTNNAC 1 cut(s) 101
HpyAV CCTTC 5 cut(s) 304, 674, 981, 1493, 1564
HpyCH4III ACNGT 1 cut(s) 1444
HpyCH4IV ACGT 2 cut(s) 316, 423
HpyCH4V TGCA 9 cut(s) 160, 194, 283, 554, 760, 921, 941, 1309, 1327
HpyF10VI GCNNNNNNNGC 4 cut(s) 339, 1513, 1519, 1528
HpyF3I CTNAG 4 cut(s) 38, 129, 1106, 1242
HpySE526I ACGT 2 cut(s) 316, 423
Hsp92II CATG 7 cut(s) 198, 674, 699, 817, 925, 1039, 1316
Ksp22I TGATCA 3 cut(s) 850, 1069, 1659
Kzo9I GATC 6 cut(s) 448, 850, 1069, 1102, 1432, 1659
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 7 cut(s) 785, 1028, 1375, 1423, 1479, 1512, 1678
Lsp1109I GCAGC 6 cut(s) 552, 566, 772, 1293, 1525, 1569
MaeI CTAG 4 cut(s) 51, 339, 537, 716
MaeII ACGT 2 cut(s) 316, 423
MaeIII GTNAC 1 cut(s) 1177
MalI GATC 6 cut(s) 450, 852, 1071, 1104, 1434, 1661
MboI GATC 6 cut(s) 448, 850, 1069, 1102, 1432, 1659
MfeI CAATTG 1 cut(s) 1134
MhlI GDGCHC 3 cut(s) 670, 1428, 1484
MlsI TGGCCA 2 cut(s) 333, 890
MluNI TGGCCA 2 cut(s) 333, 890
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 2 cut(s) 1353, 1566
Mox20I TGGCCA 2 cut(s) 333, 890
MroXI GAANNNNTTC 4 cut(s) 212, 585, 688, 711
MscI TGGCCA 2 cut(s) 333, 890
MseI TTAA 4 cut(s) 237, 267, 344, 453
MslI CAYNNNNRTG 1 cut(s) 1221
Msp20I TGGCCA 2 cut(s) 333, 890
MspA1I CMGCKG 3 cut(s) 37, 557, 1516
MspI CCGG 1 cut(s) 1388
MunI CAATTG 1 cut(s) 1134
MwoI GCNNNNNNNGC 4 cut(s) 339, 1513, 1519, 1528
NcoI CCATGG 1 cut(s) 695
NdeI CATATG 1 cut(s) 877
NdeII GATC 6 cut(s) 448, 850, 1069, 1102, 1432, 1659
NlaIII CATG 7 cut(s) 198, 674, 699, 817, 925, 1039, 1316
NlaIV GGNNCC 1 cut(s) 930
NspI RCATGY 2 cut(s) 198, 925
PaeI GCATGC 1 cut(s) 925
PagI TCATGA 1 cut(s) 670
PaqCI CACCTGC 1 cut(s) 586
PciSI GCTCTTC 1 cut(s) 561
PdmI GAANNNNTTC 4 cut(s) 212, 585, 688, 711
PfeI GAWTC 5 cut(s) 586, 639, 684, 1041, 1650
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 7 cut(s) 460, 542, 556, 762, 1308, 1515, 1559
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 1428
Psp1406I AACGTT 1 cut(s) 423
PspFI CCCAGC 1 cut(s) 925
PspN4I GGNNCC 1 cut(s) 930
PspPI GGNCC 4 cut(s) 26, 929, 1005, 1462
PstI CTGCAG 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 1516
PvuII CAGCTG 3 cut(s) 37, 557, 1516
RsaI GTAC 4 cut(s) 315, 733, 835, 911
RsaNI GTAC 4 cut(s) 314, 732, 834, 910
RseI CAYNNNNRTG 1 cut(s) 1221
SacI GAGCTC 1 cut(s) 1428
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 4 cut(s) 237, 267, 344, 453
SatI GCNGC 7 cut(s) 459, 541, 555, 761, 1307, 1514, 1558
Sau3AI GATC 6 cut(s) 448, 850, 1069, 1102, 1432, 1659
Sau96I GGNCC 4 cut(s) 26, 929, 1005, 1462
ScaI AGTACT 1 cut(s) 911
SchI GAGTC 1 cut(s) 262
SduI GDGCHC 3 cut(s) 670, 1428, 1484
SfcI CTRYAG 2 cut(s) 552, 1203
SinI GGWCC 2 cut(s) 26, 1462
SmiMI CAYNNNNRTG 1 cut(s) 1221
SmlI CTYRAG 2 cut(s) 1360, 1379
SmoI CTYRAG 2 cut(s) 1360, 1379
SphI GCATGC 1 cut(s) 925
SsiI CCGC 1 cut(s) 458
SspI AATATT 5 cut(s) 710, 754, 773, 781, 1302
SspMI CTAG 4 cut(s) 51, 339, 537, 716
SstI GAGCTC 1 cut(s) 1428
StyI CCWWGG 1 cut(s) 695
TaaI ACNGT 1 cut(s) 1444
TaiI ACGT 2 cut(s) 319, 426
TaqI TCGA 3 cut(s) 125, 984, 1489
TatI WGTACW 3 cut(s) 731, 833, 909
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 5 cut(s) 586, 639, 684, 1041, 1650
Tru1I TTAA 4 cut(s) 237, 267, 344, 453
Tru9I TTAA 4 cut(s) 237, 267, 344, 453
TscAI CASTG 3 cut(s) 670, 1632, 1669
TseI GCWGC 6 cut(s) 540, 554, 760, 1306, 1513, 1557
TspDTI ATGAA 5 cut(s) 366, 434, 783, 1211, 1634
TspRI CASTG 3 cut(s) 670, 1632, 1669
Van91I CCANNNNNTGG 1 cut(s) 598
VpaK11BI GGWCC 2 cut(s) 26, 1462
VspI ATTAAT 1 cut(s) 267
XagI CCTNNNNNAGG 1 cut(s) 1326
XapI RAATTY 5 cut(s) 353, 560, 1078, 1317, 1453
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 2 cut(s) 198, 925
XmnI GAANNNNTTC 4 cut(s) 212, 585, 688, 711
XspI CTAG 4 cut(s) 51, 339, 537, 716
ZrmI AGTACT 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.