Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015511.1

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Reverse (-)

33824 .. 35185

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015511.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atgatatttgggaactacgtagctgctaaacaattcttggaagagttggaacgaaaatcgggtattggttcttactcaggtgcagtgagttatggtgaccgttatctgagctatggtgatgattctcaaaaagttgatgggcagattgtgtcaggctcagataaagaagtgaatactaatgaacaagggggtgctaaagggttatttgattctgttgcattggcagctcttctgaaaatagcaacagctgccgttgtattagatggtaacaaattggagaatcaagtaccaccacttgtcctttatgttattcctcagatgcatgctaattttgttaaccccaattttcagccgattacatcagtgcaaatcaactatgccttacctaagtgttgtaggtatggaaaggatattggtaaatgttctgtggtgaatgttcttaatgcattgtgtgtaaggcttaagcattacattgagggttcaaagaatattagccaccatgtactgcaactatgcttctcaagatttgataagaaggttcgtgataaagatggtactctcttaacagatgaaccttttatggagtactttgtagggacaatgacatttggtaatagcttgaaatttaccttttcacaaacaatgactttgattgaattatggagttatggatatgttgagaaaaataaattatggtttaccaaaatttcactgattagttttggaaatggatgcttcgatttccaccatgatcatgggcttatctctagtggcattgaatttaatagtttcttggtgagtaaaaatgatggttgcatagttgttctttaccagaacatgaatgaagaagatgatatggaagagattgaattgcctcctgaagtttgtgacttgtttaatggggattgggttttcgaacctgtgactcatcctttgtataaagaagacgaatgcgagttcttgacagcccaagtgacttgtatgatgaatggaagaagaaactctctgtatcaacattggagatggcagcccagagattgtaatcttccaaagttcaatgcaagattgttgctagagaaacttagaaacaagaggctcgtgtttgtgggggactcattgaatagaaaccagcgggaatcaataatatgttttgctcagtctgtaatttctcctgggagaaagagcttggtgacaaatggatctctatctgttttcataattgagaattacaatactacagtaaagtttaagtgggagataaaagggtttgggaatttgcttatgttggcccatcctctacatgtgaagcttcttatgaatgatattgaagtggtgcacaaaggaattaagccatttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

453

Amino Acids

51.47

Weight (kDa)

6.47

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1132
AclWI	GGATC	1 cut(s)	1207
AcsI	RAATTY	4 cut(s)	623, 705, 779, 1273
AcuI	CTGAAG	1 cut(s)	900
AfaI	GTAC	4 cut(s)	288, 504, 556, 587
AflII	CTTAAG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	1300
AgsI	TTSAA	8 cut(s)	483, 622, 656, 779, 869, 1057, 1120, 1328
AjnI	CCWGG	1 cut(s)	1171
AluBI	AGCT	7 cut(s)	23, 111, 227, 248, 618, 1185, 1309
AluI	AGCT	7 cut(s)	23, 111, 227, 248, 618, 1185, 1309
Alw21I	GWGCWC	1 cut(s)	1338
Alw44I	GTGCAC	1 cut(s)	1334
AlwI	GGATC	1 cut(s)	1207
AoxI	GGCC	1 cut(s)	1287
ApaLI	GTGCAC	1 cut(s)	1334
ApeKI	GCWGC	4 cut(s)	23, 224, 248, 1027
ApoI	RAATTY	4 cut(s)	623, 705, 779, 1273
ArsI	GACNNNNNNTTYG	2 cut(s)	916, 948
AspS9I	GGNCC	1 cut(s)	1288
AsuHPI	GGTGA	5 cut(s)	107, 128, 442, 808, 1201
AsuII	TTCGAA	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	1338
BauI	CACGAG	1 cut(s)	1097
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	1 cut(s)	1338
BbvI	GCAGC	4 cut(s)	10, 235, 236, 1039
BccI	CCATC	6 cut(s)	131, 257, 545, 803, 1017, 1299
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	1173
BclI	TGATCA	1 cut(s)	751
BfaI	CTAG	2 cut(s)	768, 1073
BfmI	CTRYAG	1 cut(s)	1236
BfrI	CTTAAG	1 cut(s)	461
BisI	GCNGC	4 cut(s)	24, 225, 249, 1028
BlsI	GCNGC	4 cut(s)	25, 226, 250, 1029
BmcAI	AGTACT	1 cut(s)	587
Bme1390I	CCNGG	1 cut(s)	1173
BmgT120I	GGNCC	1 cut(s)	1288
BmrFI	CCNGG	1 cut(s)	1173
BmsI	GCATC	2 cut(s)	309, 722
BpiI	GAAGAC	1 cut(s)	951
Bpu14I	TTCGAA	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	505
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	2 cut(s)	1041, 1204
BsaJI	CCNNGG	1 cut(s)	1172
Bse8I	GATNNNNATC	2 cut(s)	1041, 1204
BseBI	CCWGG	1 cut(s)	1173
BseDI	CCNNGG	1 cut(s)	1172
BseGI	GGATG	3 cut(s)	737, 928, 1291
BseJI	GATNNNNATC	2 cut(s)	1041, 1204
BseMII	CTCAG	5 cut(s)	90, 98, 171, 329, 1169
BseSI	GKGCMC	1 cut(s)	1338
BseXI	GCAGC	4 cut(s)	10, 235, 236, 1039
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	1289
BsiHKAI	GWGCWC	1 cut(s)	1338
BslFI	GGGAC	2 cut(s)	610, 1124
BsmFI	GGGAC	2 cut(s)	610, 1124
BsmI	GAATGC	1 cut(s)	956
BsnI	GGCC	1 cut(s)	1289
Bsp119I	TTCGAA	1 cut(s)	915
Bsp1286I	GDGCHC	1 cut(s)	1338
Bsp143I	GATC	2 cut(s)	751, 1199
BspACI	CCGC	1 cut(s)	1132
BspANI	GGCC	1 cut(s)	1289
BspCNI	CTCAG	5 cut(s)	89, 99, 170, 328, 1168
BspPI	GGATC	1 cut(s)	1207
BspQI	GCTCTTC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	915
BspTI	CTTAAG	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	1172
BssMI	GATC	2 cut(s)	751, 1199
BssSI	CACGAG	1 cut(s)	1097
Bst2BI	CACGAG	1 cut(s)	1097
Bst2UI	CCWGG	1 cut(s)	1173
Bst4CI	ACNGT	2 cut(s)	101, 1240
Bst6I	CTCTTC	3 cut(s)	36, 234, 855
BstAFI	CTTAAG	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	915
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	7 cut(s)	76, 107, 157, 315, 387, 1082, 1155
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	3 cut(s)	737, 928, 1291
BstKTI	GATC	2 cut(s)	754, 1202
BstMBI	GATC	2 cut(s)	751, 1199
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 248
BstNI	CCWGG	1 cut(s)	1173
BstNSI	RCATGY	2 cut(s)	326, 1304
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	1171
BstSFI	CTRYAG	1 cut(s)	1236
BstSLI	GKGCMC	1 cut(s)	1338
BstSNI	TACGTA	1 cut(s)	19
BstV1I	GCAGC	4 cut(s)	10, 235, 236, 1039
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	1 cut(s)	1199
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	1199
BsuRI	GGCC	1 cut(s)	1289
BtsCI	GGATG	3 cut(s)	737, 928, 1291
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	90, 369, 710
Cac8I	GCNNGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	1288
Csp6I	GTAC	4 cut(s)	287, 503, 555, 586
CviAII	CATG	6 cut(s)	323, 500, 749, 755, 838, 1301
CviQI	GTAC	4 cut(s)	287, 503, 555, 586
DdeI	CTNAG	7 cut(s)	76, 107, 157, 315, 387, 1082, 1155
DpnI	GATC	2 cut(s)	753, 1201
DpnII	GATC	2 cut(s)	751, 1199
Eam1104I	CTCTTC	3 cut(s)	36, 234, 855
EarI	CTCTTC	3 cut(s)	36, 234, 855
Eco105I	TACGTA	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	900
Eco91I	GGTNACC	1 cut(s)	95
EcoO65I	GGTNACC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	1171
EcoT22I	ATGCAT	2 cut(s)	324, 448
FaeI	CATG	6 cut(s)	326, 503, 752, 758, 841, 1304
FaqI	GGGAC	2 cut(s)	610, 1124
FatI	CATG	6 cut(s)	322, 499, 748, 754, 837, 1300
FauI	CCCGC	1 cut(s)	1125
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	4 cut(s)	24, 225, 249, 1028
FokI	GGATG	3 cut(s)	744, 915, 1278
Fsp4HI	GCNGC	4 cut(s)	24, 225, 249, 1028
FspBI	CTAG	2 cut(s)	768, 1073
GluI	GCNGC	4 cut(s)	24, 225, 249, 1028
HaeIII	GGCC	1 cut(s)	1289
Hin1II	CATG	6 cut(s)	326, 503, 752, 758, 841, 1304
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	1307
HinfI	GANTC	6 cut(s)	122, 209, 280, 925, 1112, 1136
HpaI	GTTAAC	1 cut(s)	337
HphI	GGTGA	5 cut(s)	107, 128, 442, 808, 1201
Hpy166II	GTNNAC	3 cut(s)	337, 699, 1336
Hpy188I	TCNGA	4 cut(s)	108, 160, 234, 318
Hpy188III	TCNNGA	4 cut(s)	522, 542, 878, 961
Hpy8I	GTNNAC	3 cut(s)	337, 699, 1336
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	2 cut(s)	101, 1240
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	9 cut(s)	83, 218, 322, 367, 446, 508, 816, 1061, 1336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 248
HpyF3I	CTNAG	7 cut(s)	76, 107, 157, 315, 387, 1082, 1155
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	6 cut(s)	326, 503, 752, 758, 841, 1304
Ksp22I	TGATCA	1 cut(s)	751
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	751, 1199
LguI	GCTCTTC	1 cut(s)	234
LpnPI	CCDG	9 cut(s)	63, 138, 845, 891, 933, 1045, 1142, 1158, 1185
Lsp1109I	GCAGC	4 cut(s)	10, 235, 236, 1039
LweI	GCATC	2 cut(s)	309, 722
MaeI	CTAG	2 cut(s)	768, 1073
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	6 cut(s)	95, 266, 887, 922, 973, 1189
MalI	GATC	2 cut(s)	753, 1201
MboI	GATC	2 cut(s)	751, 1199
MboII	GAAGA	9 cut(s)	53, 221, 857, 860, 872, 956, 1005, 1008, 1037
MflI	RGATCY	1 cut(s)	1199
MhlI	GDGCHC	1 cut(s)	1338
MlyI	GAGTC	2 cut(s)	919, 1106
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	5 cut(s)	324, 469, 885, 1086, 1305
Mph1103I	ATGCAT	2 cut(s)	324, 448
MseI	TTAA	8 cut(s)	336, 441, 462, 563, 783, 897, 1248, 1347
MslI	CAYNNNNRTG	1 cut(s)	753
MspA1I	CMGCKG	2 cut(s)	248, 1132
MspCI	CTTAAG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	1173
Mva1269I	GAATGC	1 cut(s)	956
MvaI	CCWGG	1 cut(s)	1173
MwoI	GCNNNNNNNGC	2 cut(s)	224, 248
NdeII	GATC	2 cut(s)	751, 1199
NlaIII	CATG	6 cut(s)	326, 503, 752, 758, 841, 1304
NmuCI	GTSAC	5 cut(s)	95, 887, 922, 973, 1189
NsiI	ATGCAT	2 cut(s)	324, 448
NspI	RCATGY	2 cut(s)	326, 1304
NspV	TTCGAA	1 cut(s)	915
PaeI	GCATGC	1 cut(s)	326
PciI	ACATGT	1 cut(s)	1300
PciSI	GCTCTTC	1 cut(s)	234
PctI	GAATGC	1 cut(s)	956
PfeI	GAWTC	4 cut(s)	122, 209, 280, 1136
PkrI	GCNGC	4 cut(s)	25, 226, 250, 1029
PleI	GAGTC	2 cut(s)	919, 1106
PpsI	GAGTC	2 cut(s)	919, 1106
Ppu21I	YACGTR	1 cut(s)	19
PscI	ACATGT	1 cut(s)	1300
Psp6I	CCWGG	1 cut(s)	1171
PspEI	GGTNACC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	1171
PspPI	GGNCC	1 cut(s)	1288
PsuI	RGATCY	1 cut(s)	1199
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	4 cut(s)	288, 504, 556, 587
RsaNI	GTAC	4 cut(s)	287, 503, 555, 586
RseI	CAYNNNNRTG	1 cut(s)	753
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	8 cut(s)	336, 441, 462, 563, 783, 897, 1248, 1347
SatI	GCNGC	4 cut(s)	24, 225, 249, 1028
Sau3AI	GATC	2 cut(s)	751, 1199
Sau96I	GGNCC	1 cut(s)	1288
ScaI	AGTACT	1 cut(s)	587
SchI	GAGTC	2 cut(s)	919, 1106
ScrFI	CCNGG	1 cut(s)	1173
SduI	GDGCHC	1 cut(s)	1338
SfaNI	GCATC	2 cut(s)	309, 722
SfcI	CTRYAG	1 cut(s)	1236
SfuI	TTCGAA	1 cut(s)	915
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	461, 520
SmoI	CTYRAG	2 cut(s)	461, 520
SnaBI	TACGTA	1 cut(s)	19
SphI	GCATGC	1 cut(s)	326
SsiI	CCGC	1 cut(s)	1132
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	2 cut(s)	768, 1073
StyD4I	CCNGG	1 cut(s)	1171
TaaI	ACNGT	2 cut(s)	101, 1240
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	738, 915
TatI	WGTACW	2 cut(s)	502, 585
TfiI	GAWTC	4 cut(s)	122, 209, 280, 1136
Tru1I	TTAA	8 cut(s)	336, 441, 462, 563, 783, 897, 1248, 1347
Tru9I	TTAA	8 cut(s)	336, 441, 462, 563, 783, 897, 1248, 1347
TscAI	CASTG	3 cut(s)	90, 369, 717
TseFI	GTSAC	5 cut(s)	95, 887, 922, 973, 1189
TseI	GCWGC	4 cut(s)	23, 224, 248, 1027
Tsp45I	GTSAC	5 cut(s)	95, 887, 922, 973, 1189
TspDTI	ATGAA	7 cut(s)	195, 585, 854, 858, 1001, 1204, 1331
TspRI	CASTG	3 cut(s)	90, 369, 717
Vha464I	CTTAAG	1 cut(s)	461
VneI	GTGCAC	1 cut(s)	1334
XapI	RAATTY	4 cut(s)	623, 705, 779, 1273
XceI	RCATGY	2 cut(s)	326, 1304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XspI	CTAG	2 cut(s)	768, 1073
ZrmI	AGTACT	1 cut(s)	587
Zsp2I	ATGCAT	2 cut(s)	324, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.