Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Reverse (-)

71164815 .. 71165504

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTCTCTTTAGCATCACTACTTGATGGGTCGAAAAACGATGCTTGGCATGCGCTGATGATCATTTTTGGGGATTATTTGTGGACTATGTCGATCAACCTAAAGACAATATTCCTATTGGAGATATTGAACTACGGAGTGCTTGCAATTTTTATCGGTGCATTGGTCCTATGTGGAACTAATGATCAATTATTCTGGTATTATAAGTCAAAGATCATGAAGTATCTCAAGGAATTGGCTAAAGTCTTTGACATTAAGAGTCAAATGGAGACTCGGTGGATTATCAAGTGCGGCGCCACAAAAGAAAATATTCTCCACTTTATGGTTGACTTTATTCTACTGCCCTTTACATCATCTTTTTGTAGCTTACACTTGCAGGTGGATGCTAAACGGGTTAAAACTTCACAGCATAGTCTTACCTTGTATTGCAATGCAGAAATACGTGTGAAGAATCTCAAGGTTACGGCGATTAAAAAGTACTTGAGGGATGCAATTGAGTCATGGTTAGATGGAATTCTTGGTAAAAATGGTTCTTGTGAGATTAAATGGGGTGGCAATTTTACTAGACAAGGATCATTGGATTATGGTGCAAACTTCGGGTTTGGACTTTACATTGATCACCATTATTACTTGAGTTACTTTACGTATGGCATTCGGTGCTTGCGAAGATTGAGCTGGAATGGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

229

Amino Acids

26.35

Weight (kDa)

9.12

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	139 - 223	5.8e-09	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AarI	CACCTGC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	322
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	2 cut(s)	366, 675
AluI	AGCT	2 cut(s)	366, 675
Alw26I	GTCTC	2 cut(s)	10, 263
AlwI	GGATC	1 cut(s)	580
ApoI	RAATTY	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	2 cut(s)	55, 296
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	293
BccI	CCATC	2 cut(s)	20, 503
BceAI	ACGGC	1 cut(s)	480
BclI	TGATCA	3 cut(s)	60, 184, 616
BcoDI	GTCTC	2 cut(s)	10, 263
BfaI	CTAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
BmcAI	AGTACT	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	295
BmsI	GCATC	4 cut(s)	23, 31, 373, 478
BpuEI	CTTGAG	4 cut(s)	212, 440, 502, 652
BsaAI	YACGTR	2 cut(s)	443, 645
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	436
BseGI	GGATG	2 cut(s)	388, 493
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	436
BshNI	GGYRCC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	2 cut(s)	10, 263
BsmI	GAATGC	1 cut(s)	651
Bso31I	GGTCTC	1 cut(s)	10
Bsp143I	GATC	6 cut(s)	60, 93, 184, 213, 572, 616
BspACI	CCGC	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	580
BspT107I	GGYRCC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	436
BssMI	GATC	6 cut(s)	60, 93, 184, 213, 572, 616
BssNI	GRCGYC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	657
BstBAI	YACGTR	2 cut(s)	443, 645
BstC8I	GCNNGC	3 cut(s)	51, 144, 662
BstF5I	GGATG	2 cut(s)	388, 493
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	55, 296
BstKTI	GATC	6 cut(s)	63, 96, 187, 216, 575, 619
BstMAI	GTCTC	2 cut(s)	10, 263
BstMBI	GATC	6 cut(s)	60, 93, 184, 213, 572, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 657
BstNSI	RCATGY	1 cut(s)	53
BstSNI	TACGTA	1 cut(s)	645
BtsCI	GGATG	2 cut(s)	388, 493
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	3 cut(s)	51, 144, 662
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	2 cut(s)	55, 296
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	3 cut(s)	50, 217, 501
CviJI	RGCY	3 cut(s)	239, 366, 675
CviKI_1	RGCY	3 cut(s)	239, 366, 675
CviQI	GTAC	1 cut(s)	478
DinI	GGCGCC	1 cut(s)	295
DpnI	GATC	6 cut(s)	62, 95, 186, 215, 574, 618
DpnII	GATC	6 cut(s)	60, 93, 184, 213, 572, 616
Eco105I	TACGTA	1 cut(s)	645
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	513
EgeI	GGCGCC	1 cut(s)	295
EheI	GGCGCC	1 cut(s)	295
FaeI	CATG	3 cut(s)	53, 220, 504
FatI	CATG	3 cut(s)	49, 216, 500
FbaI	TGATCA	3 cut(s)	60, 184, 616
Fnu4HI	GCNGC	1 cut(s)	292
FokI	GGATG	2 cut(s)	395, 500
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	2 cut(s)	54, 295
GluI	GCNGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	297
HhaI	GCGC	2 cut(s)	55, 296
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	53, 220, 504
Hin6I	GCGC	2 cut(s)	53, 294
HinP1I	GCGC	2 cut(s)	53, 294
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	4 cut(s)	259, 271, 451, 497
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	84, 328
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	84, 328
HpyCH4IV	ACGT	2 cut(s)	442, 644
HpyCH4V	TGCA	7 cut(s)	146, 161, 376, 429, 434, 491, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 657
HpySE526I	ACGT	2 cut(s)	442, 644
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	53, 220, 504
HspAI	GCGC	2 cut(s)	53, 294
KasI	GGCGCC	1 cut(s)	293
Ksp22I	TGATCA	3 cut(s)	60, 184, 616
Kzo9I	GATC	6 cut(s)	60, 93, 184, 213, 572, 616
LpnPI	CCDG	3 cut(s)	181, 362, 661
LweI	GCATC	4 cut(s)	23, 31, 373, 478
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	2 cut(s)	442, 644
MaeIII	GTNAC	2 cut(s)	460, 635
MalI	GATC	6 cut(s)	62, 95, 186, 215, 574, 618
MboI	GATC	6 cut(s)	60, 93, 184, 213, 572, 616
MboII	GAAGA	2 cut(s)	460, 678
MfeI	CAATTG	1 cut(s)	492
MluCI	AATT	6 cut(s)	147, 188, 233, 492, 513, 556
Mly113I	GGCGCC	1 cut(s)	294
MlyI	GAGTC	3 cut(s)	265, 268, 506
MnlI	CCTC	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	4 cut(s)	255, 396, 471, 543
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	651
MwoI	GCNNNNNNNGC	2 cut(s)	50, 657
NarI	GGCGCC	1 cut(s)	294
NdeII	GATC	6 cut(s)	60, 93, 184, 213, 572, 616
NlaIII	CATG	3 cut(s)	53, 220, 504
NlaIV	GGNNCC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	53
PagI	TCATGA	1 cut(s)	216
PaqCI	CACCTGC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	661
PctI	GAATGC	1 cut(s)	651
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	451
PflFI	GACNNNGTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	3 cut(s)	265, 267, 505
PluTI	GGCGCC	1 cut(s)	297
PpsI	GAGTC	3 cut(s)	265, 267, 505
Ppu21I	YACGTR	2 cut(s)	443, 645
PsiI	TTATAA	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	166
PsrI	GAACNNNNNNTAC	2 cut(s)	514, 546
PsyI	GACNNNGTC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	255, 396, 471, 543
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	6 cut(s)	60, 93, 184, 213, 572, 616
Sau96I	GGNCC	1 cut(s)	166
ScaI	AGTACT	1 cut(s)	479
SchI	GAGTC	3 cut(s)	265, 268, 506
SetI	ASST	8 cut(s)	102, 368, 381, 422, 445, 462, 647, 677
SfaNI	GCATC	4 cut(s)	23, 31, 373, 478
SfoI	GGCGCC	1 cut(s)	295
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	4 cut(s)	227, 455, 481, 631
SmoI	CTYRAG	4 cut(s)	227, 455, 481, 631
SnaBI	TACGTA	1 cut(s)	645
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	6 cut(s)	147, 188, 233, 492, 513, 556
SsiI	CCGC	1 cut(s)	291
SspDI	GGCGCC	1 cut(s)	293
SspI	AATATT	2 cut(s)	111, 310
SspMI	CTAG	1 cut(s)	564
TaiI	ACGT	2 cut(s)	445, 647
TaqI	TCGA	2 cut(s)	32, 92
TasI	AATT	6 cut(s)	147, 188, 233, 492, 513, 556
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	4 cut(s)	255, 396, 471, 543
Tru9I	TTAA	4 cut(s)	255, 396, 471, 543
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	150
Tth111I	GACNNNGTC	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	564
ZrmI	AGTACT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.