Rh5DG320200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000779
Physical Location & Seq
Reverse (-)
41285927 .. 41286220
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG320200.1

Sequence Viewer

Length: 294 bp
ATGAAAGCTGTTGTTGTAGAAAATGCCAATGATCTTAATGCAGCTGTCAATGATGTGCTGAATGAGGTTCTCCTTTTCTTGAACAAGCATCCTGAAAGTCCTCCAAATGTTCAGTCTCCTAGCAGCCATTCAACTGCAGCTGAATCTGAAGAGCAGAGTAAAGAATTGATTCACCAGCAGGTAGATAAGGAAGTAGAGGTTGAACTATTTCAAGCAGCAGGATTCTCTGATGTTGTATCTAAAATCAGTGCTCATGAGGAAGAAGGAAAATATTCTTCATGGGTAAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

97

Amino Acids

10.72

Weight (kDa)

4.73

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 168
AgsI TTSAA 4 cut(s) 82, 132, 203, 212
AluBI AGCT 3 cut(s) 8, 44, 140
AluI AGCT 3 cut(s) 8, 44, 140
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 120
ApeKI GCWGC 4 cut(s) 41, 123, 137, 215
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 3 cut(s) 168, 207, 271
AsuHPI GGTGA 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 4 cut(s) 53, 135, 149, 227
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 4 cut(s) 42, 124, 138, 216
BlsI GCNGC 4 cut(s) 43, 125, 139, 217
BmsI GCATC 1 cut(s) 97
BseGI GGATG 1 cut(s) 88
BseXI GCAGC 4 cut(s) 53, 135, 149, 227
BsiHKAI GWGCWC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 31
BspHI TCATGA 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 144
BssMI GATC 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 144
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 4 cut(s) 53, 135, 149, 227
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 169
CciI TCATGA 1 cut(s) 253
CviAII CATG 2 cut(s) 254, 279
CviJI RGCY 4 cut(s) 8, 44, 126, 140
CviKI_1 RGCY 4 cut(s) 8, 44, 126, 140
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 168
FaeI CATG 2 cut(s) 257, 282
FaiI YATR 2 cut(s) 255, 280
FatI CATG 2 cut(s) 253, 278
Fnu4HI GCNGC 4 cut(s) 42, 124, 138, 216
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 4 cut(s) 42, 124, 138, 216
FspBI CTAG 1 cut(s) 120
GluI GCNGC 4 cut(s) 42, 124, 138, 216
Hin1II CATG 2 cut(s) 257, 282
HinfI GANTC 3 cut(s) 143, 169, 222
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 148, 229
Hpy188III TCNNGA 3 cut(s) 79, 92, 254
HpyAV CCTTC 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 41, 137
Hsp92II CATG 2 cut(s) 257, 282
Kzo9I GATC 1 cut(s) 31
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 4 cut(s) 105, 164, 188, 204
Lsp1109I GCAGC 4 cut(s) 53, 135, 149, 227
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 120
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 3 cut(s) 161, 267, 272
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 1 cut(s) 164
MnlI CCTC 4 cut(s) 58, 111, 190, 250
MroXI GAANNNNTTC 3 cut(s) 168, 207, 271
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 2 cut(s) 44, 140
NdeII GATC 1 cut(s) 31
NlaIII CATG 2 cut(s) 257, 282
PagI TCATGA 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 144
PdmI GAANNNNTTC 3 cut(s) 168, 207, 271
PfeI GAWTC 3 cut(s) 143, 169, 222
PkrI GCNGC 4 cut(s) 43, 125, 139, 217
PstI CTGCAG 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 44, 140
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 4 cut(s) 42, 124, 138, 216
Sau3AI GATC 1 cut(s) 31
SduI GDGCHC 1 cut(s) 253
SetI ASST 6 cut(s) 10, 46, 69, 142, 183, 201
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 135
SgeI CNNG 9 cut(s) 91, 97, 104, 132, 187, 191, 224, 231, 266
Sse9I AATT 1 cut(s) 164
SspI AATATT 1 cut(s) 272
SspMI CTAG 1 cut(s) 120
TasI AATT 1 cut(s) 164
TfiI GAWTC 3 cut(s) 143, 169, 222
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 253
TseI GCWGC 4 cut(s) 41, 123, 137, 215
TspDTI ATGAA 2 cut(s) 17, 267
TspRI CASTG 1 cut(s) 253
XmnI GAANNNNTTC 3 cut(s) 168, 207, 271
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.