Rh1AG005700

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
764745 .. 765017
273 bp
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UTR
Exon/CDS
Intron
Rh1AG005700.1

Sequence Viewer

Length: 273 bp
ATGGAGGAGGATGTTTCTCTCACCATAATTGCTCTGGCTGGGTTGAACTTGTCGACTGTCAGTAATGATGAAGATTATGGTGACCGCAGCAACTATCCTATTCTATATGTTGTTGTAGTTGCAGCAGCTGCAAGAAGCACACTGTGTCCGCTTTCCTTGCAAATCCTTCTTGAAGACATATACATGATGCAGCAGCTCACACTTCTTCATTTGGTGGTGATTATGAAGGAAGAAGCGAATCTGCTGATAAAAGTTCTAAAAGCCGGAAGTTGA

Protein Analysis

90

Amino Acids

9.88

Weight (kDa)

4.37

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 53
AciI CCGC 2 cut(s) 85, 149
AdeI CACNNNGTG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 46, 173
AluBI AGCT 2 cut(s) 128, 196
AluI AGCT 2 cut(s) 128, 196
AlwNI CAGNNNCTG 1 cut(s) 128
ApeKI GCWGC 6 cut(s) 87, 122, 125, 128, 190, 193
AsuHPI GGTGA 3 cut(s) 13, 92, 229
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 6 cut(s) 99, 115, 134, 137, 202, 205
BisI GCNGC 6 cut(s) 88, 123, 126, 129, 191, 194
BlsI GCNGC 6 cut(s) 89, 124, 127, 130, 192, 195
BmsI GCATC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 180
BseGI GGATG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 6 cut(s) 99, 115, 134, 137, 202, 205
BseYI CCCAGC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 264
BspACI CCGC 2 cut(s) 85, 149
Bst4CI ACNGT 2 cut(s) 58, 144
BstAPI GCANNNNNTGC 1 cut(s) 128
BstEII GGTNACC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 128, 157
BstPI GGTNACC 1 cut(s) 80
BstV1I GCAGC 6 cut(s) 99, 115, 134, 137, 202, 205
BstV2I GAAGAC 1 cut(s) 180
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 140
CaiI CAGNNNCTG 1 cut(s) 128
CviAII CATG 1 cut(s) 184
CviJI RGCY 4 cut(s) 38, 128, 196, 263
CviKI_1 RGCY 4 cut(s) 38, 128, 196, 263
DraIII CACNNNGTG 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 80
EcoO65I GGTNACC 1 cut(s) 80
FaeI CATG 1 cut(s) 187
FaiI YATR 8 cut(s) 26, 78, 106, 108, 179, 181, 185, 224
FatI CATG 1 cut(s) 183
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 6 cut(s) 88, 123, 126, 129, 191, 194
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 6 cut(s) 88, 123, 126, 129, 191, 194
GluI GCNGC 6 cut(s) 88, 123, 126, 129, 191, 194
GsaI CCCAGC 1 cut(s) 42
HapII CCGG 1 cut(s) 264
Hin1II CATG 1 cut(s) 187
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 264
HphI GGTGA 3 cut(s) 13, 92, 229
Hpy166II GTNNAC 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 176, 220
HpyCH4III ACNGT 2 cut(s) 58, 144
HpyCH4V TGCA 4 cut(s) 122, 131, 160, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 157
Hsp92II CATG 1 cut(s) 187
LpnPI CCDG 2 cut(s) 20, 24
Lsp1109I GCAGC 6 cut(s) 99, 115, 134, 137, 202, 205
LweI GCATC 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 80
MboII GAAGA 4 cut(s) 83, 185, 197, 242
MluCI AATT 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 128, 157
NlaIII CATG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 6 cut(s) 89, 124, 127, 130, 192, 195
PspEI GGTNACC 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 182
SalI GTCGAC 1 cut(s) 52
SatI GCNGC 6 cut(s) 88, 123, 126, 129, 191, 194
SetI ASST 2 cut(s) 130, 198
SfaNI GCATC 1 cut(s) 177
SgeI CNNG 7 cut(s) 47, 51, 61, 144, 169, 182, 196
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 1 cut(s) 27
SsiI CCGC 2 cut(s) 85, 149
TaaI ACNGT 2 cut(s) 58, 144
TaqI TCGA 1 cut(s) 53
TasI AATT 1 cut(s) 27
TfiI GAWTC 1 cut(s) 238
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 6 cut(s) 87, 122, 125, 128, 190, 193
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 84, 197, 239
TspRI CASTG 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.