RING-type E3 ubiquitin transferase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2207 |
| Acc36I | ACCTGC | 2 cut(s) | 291, 2207 |
| AccB1I | GGYRCC | 1 cut(s) | 2195 |
| AccI | GTMKAC | 1 cut(s) | 1268 |
| AccII | CGCG | 2 cut(s) | 850, 2193 |
| AciI | CCGC | 2 cut(s) | 1250, 2193 |
| AclWI | GGATC | 2 cut(s) | 108, 1079 |
| AcuI | CTGAAG | 2 cut(s) | 1560, 1968 |
| AcyI | GRCGYC | 1 cut(s) | 556 |
| AfaI | GTAC | 4 cut(s) | 186, 1203, 1864, 2137 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 513, 730, 1172, 1717 |
| AgsI | TTSAA | 9 cut(s) | 376, 582, 882, 1006, 1030, 1219, 1390, 1550, 2126 |
| AjnI | CCWGG | 3 cut(s) | 96, 857, 1036 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 461, 482, 493, 514 |
| Alw21I | GWGCWC | 2 cut(s) | 622, 1155 |
| Alw26I | GTCTC | 3 cut(s) | 563, 970, 1259 |
| AlwI | GGATC | 2 cut(s) | 108, 1079 |
| Ama87I | CYCGRG | 2 cut(s) | 188, 1461 |
| AoxI | GGCC | 1 cut(s) | 1426 |
| ApeKI | GCWGC | 3 cut(s) | 216, 319, 1033 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2135, 2167 |
| AseI | ATTAAT | 2 cut(s) | 54, 1998 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 751 |
| AspLEI | GCGC | 1 cut(s) | 1656 |
| AspS9I | GGNCC | 1 cut(s) | 1426 |
| AsuHPI | GGTGA | 9 cut(s) | 123, 257, 496, 680, 745, 932, 1102, 1609, 1931 |
| AsuII | TTCGAA | 1 cut(s) | 1894 |
| AvaI | CYCGRG | 2 cut(s) | 188, 1461 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1185, 1218 |
| BanI | GGYRCC | 1 cut(s) | 2195 |
| BanII | GRGCYC | 1 cut(s) | 39 |
| BbsI | GAAGAC | 1 cut(s) | 1557 |
| Bbv12I | GWGCWC | 2 cut(s) | 622, 1155 |
| BbvI | GCAGC | 3 cut(s) | 203, 331, 1020 |
| BciT130I | CCWGG | 3 cut(s) | 98, 859, 1038 |
| BciVI | GTATCC | 1 cut(s) | 299 |
| BclI | TGATCA | 1 cut(s) | 1848 |
| BcoDI | GTCTC | 3 cut(s) | 563, 970, 1259 |
| BfaI | CTAG | 8 cut(s) | 20, 107, 222, 324, 887, 1617, 1929, 2181 |
| BfmI | CTRYAG | 2 cut(s) | 2064, 2095 |
| BfuAI | ACCTGC | 2 cut(s) | 291, 2207 |
| BfuI | GTATCC | 1 cut(s) | 299 |
| BglII | AGATCT | 1 cut(s) | 1473 |
| BisI | GCNGC | 4 cut(s) | 217, 320, 1034, 2194 |
| BlsI | GCNGC | 4 cut(s) | 218, 321, 1035, 2195 |
| Bme1390I | CCNGG | 3 cut(s) | 98, 859, 1038 |
| BmeT110I | CYCGRG | 2 cut(s) | 188, 1461 |
| BmgT120I | GGNCC | 1 cut(s) | 1426 |
| BmiI | GGNNCC | 1 cut(s) | 2197 |
| BmrFI | CCNGG | 3 cut(s) | 98, 859, 1038 |
| BmrI | ACTGGG | 1 cut(s) | 956 |
| BmsI | GCATC | 3 cut(s) | 1109, 1240, 1964 |
| BmuI | ACTGGG | 1 cut(s) | 956 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2117 |
| BpiI | GAAGAC | 1 cut(s) | 1557 |
| BpmI | CTGGAG | 2 cut(s) | 141, 841 |
| Bpu14I | TTCGAA | 1 cut(s) | 1894 |
| BpuEI | CTTGAG | 2 cut(s) | 53, 1630 |
| BsaHI | GRCGYC | 1 cut(s) | 556 |
| BsaI | GGTCTC | 1 cut(s) | 1259 |
| BsaJI | CCNNGG | 4 cut(s) | 858, 981, 1332, 1412 |
| BsaWI | WCCGGW | 1 cut(s) | 1087 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 513, 730, 1172, 1717 |
| Bse1I | ACTGG | 5 cut(s) | 664, 962, 1580, 1858, 2150 |
| Bse3DI | GCAATG | 2 cut(s) | 76, 1128 |
| BseBI | CCWGG | 3 cut(s) | 98, 859, 1038 |
| BseDI | CCNNGG | 4 cut(s) | 858, 981, 1332, 1412 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 513, 730, 1172, 1717 |
| BseMI | GCAATG | 2 cut(s) | 76, 1128 |
| BseMII | CTCAG | 5 cut(s) | 343, 1461, 1914, 1958, 2153 |
| BseNI | ACTGG | 5 cut(s) | 664, 962, 1580, 1858, 2150 |
| BseRI | GAGGAG | 2 cut(s) | 754, 1953 |
| BseXI | GCAGC | 3 cut(s) | 203, 331, 1020 |
| BseYI | CCCAGC | 1 cut(s) | 610 |
| BsgI | GTGCAG | 1 cut(s) | 202 |
| Bsh1236I | CGCG | 2 cut(s) | 850, 2193 |
| BshFI | GGCC | 1 cut(s) | 1428 |
| BshNI | GGYRCC | 1 cut(s) | 2195 |
| BsiHKAI | GWGCWC | 2 cut(s) | 622, 1155 |
| BsiHKCI | CYCGRG | 2 cut(s) | 188, 1461 |
| BsiSI | CCGG | 1 cut(s) | 1088 |
| BslFI | GGGAC | 1 cut(s) | 875 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 513, 730, 1172, 1717 |
| BsmAI | GTCTC | 3 cut(s) | 563, 970, 1259 |
| BsmBI | CGTCTC | 1 cut(s) | 563 |
| BsmFI | GGGAC | 1 cut(s) | 875 |
| BsmI | GAATGC | 1 cut(s) | 1385 |
| BsnI | GGCC | 1 cut(s) | 1428 |
| Bso31I | GGTCTC | 1 cut(s) | 1259 |
| BsoBI | CYCGRG | 2 cut(s) | 188, 1461 |
| Bsp119I | TTCGAA | 1 cut(s) | 1894 |
| Bsp1286I | GDGCHC | 3 cut(s) | 39, 622, 1155 |
| Bsp143I | GATC | 5 cut(s) | 100, 1084, 1473, 1848, 2164 |
| Bsp19I | CCATGG | 1 cut(s) | 981 |
| Bsp68I | TCGCGA | 1 cut(s) | 850 |
| BspACI | CCGC | 2 cut(s) | 1250, 2193 |
| BspANI | GGCC | 1 cut(s) | 1428 |
| BspCNI | CTCAG | 5 cut(s) | 342, 1462, 1913, 1959, 2152 |
| BspFNI | CGCG | 2 cut(s) | 850, 2193 |
| BspLI | GGNNCC | 1 cut(s) | 2197 |
| BspMI | ACCTGC | 2 cut(s) | 291, 2207 |
| BspPI | GGATC | 2 cut(s) | 108, 1079 |
| BspQI | GCTCTTC | 2 cut(s) | 133, 785 |
| BspT104I | TTCGAA | 1 cut(s) | 1894 |
| BspT107I | GGYRCC | 1 cut(s) | 2195 |
| BspTNI | GGTCTC | 1 cut(s) | 1259 |
| BsrDI | GCAATG | 2 cut(s) | 76, 1128 |
| BsrI | ACTGG | 5 cut(s) | 664, 962, 1580, 1858, 2150 |
| BssECI | CCNNGG | 4 cut(s) | 858, 981, 1332, 1412 |
| BssMI | GATC | 5 cut(s) | 100, 1084, 1473, 1848, 2164 |
| BssNI | GRCGYC | 1 cut(s) | 556 |
| BssT1I | CCWWGG | 3 cut(s) | 981, 1332, 1412 |
| Bst2UI | CCWGG | 3 cut(s) | 98, 859, 1038 |
| Bst4CI | ACNGT | 6 cut(s) | 89, 403, 1239, 1277, 1726, 2008 |
| Bst6I | CTCTTC | 4 cut(s) | 133, 731, 785, 1214 |
| BstACI | GRCGYC | 1 cut(s) | 556 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 540, 1784 |
| BstBI | TTCGAA | 1 cut(s) | 1894 |
| BstC8I | GCNNGC | 2 cut(s) | 909, 1746 |
| BstDEI | CTNAG | 5 cut(s) | 329, 1470, 1900, 1967, 2139 |
| BstDSI | CCRYGG | 1 cut(s) | 981 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 728 |
| BstFNI | CGCG | 2 cut(s) | 850, 2193 |
| BstHHI | GCGC | 1 cut(s) | 1656 |
| BstKTI | GATC | 5 cut(s) | 103, 1087, 1476, 1851, 2167 |
| BstMAI | GTCTC | 3 cut(s) | 563, 970, 1259 |
| BstMBI | GATC | 5 cut(s) | 100, 1084, 1473, 1848, 2164 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 540, 562, 571, 1382, 1754, 1784, 2199 |
| BstNI | CCWGG | 3 cut(s) | 98, 859, 1038 |
| BstNSI | RCATGY | 4 cut(s) | 1164, 1411, 1748, 2136 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2117 |
| BstSCI | CCNGG | 3 cut(s) | 96, 857, 1036 |
| BstSFI | CTRYAG | 2 cut(s) | 2064, 2095 |
| BstUI | CGCG | 2 cut(s) | 850, 2193 |
| BstV1I | GCAGC | 3 cut(s) | 203, 331, 1020 |
| BstV2I | GAAGAC | 1 cut(s) | 1557 |
| BstX2I | RGATCY | 2 cut(s) | 1084, 1473 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 119 |
| BstYI | RGATCY | 2 cut(s) | 1084, 1473 |
| BsuI | GTATCC | 1 cut(s) | 299 |
| BsuRI | GGCC | 1 cut(s) | 1428 |
| BtgI | CCRYGG | 1 cut(s) | 981 |
| BtsI | GCAGTG | 1 cut(s) | 417 |
| BtsIMutI | CAGTG | 3 cut(s) | 276, 417, 1851 |
| BtuMI | TCGCGA | 1 cut(s) | 850 |
| BveI | ACCTGC | 2 cut(s) | 291, 2207 |
| Cac8I | GCNNGC | 2 cut(s) | 909, 1746 |
| CfoI | GCGC | 1 cut(s) | 1656 |
| Cfr13I | GGNCC | 1 cut(s) | 1426 |
| CseI | GACGC | 1 cut(s) | 545 |
| Csp6I | GTAC | 4 cut(s) | 185, 1202, 1863, 2136 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1287, 1322 |
| CviQI | GTAC | 4 cut(s) | 185, 1202, 1863, 2136 |
| DdeI | CTNAG | 5 cut(s) | 329, 1470, 1900, 1967, 2139 |
| DpnI | GATC | 5 cut(s) | 102, 1086, 1475, 1850, 2166 |
| DpnII | GATC | 5 cut(s) | 100, 1084, 1473, 1848, 2164 |
| Eam1104I | CTCTTC | 4 cut(s) | 133, 731, 785, 1214 |
| EarI | CTCTTC | 4 cut(s) | 133, 731, 785, 1214 |
| Eco130I | CCWWGG | 3 cut(s) | 981, 1332, 1412 |
| Eco24I | GRGCYC | 1 cut(s) | 39 |
| Eco31I | GGTCTC | 1 cut(s) | 1259 |
| Eco57I | CTGAAG | 2 cut(s) | 1560, 1968 |
| Eco88I | CYCGRG | 2 cut(s) | 188, 1461 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 728 |
| EcoRI | GAATTC | 2 cut(s) | 1025, 1289 |
| EcoRII | CCWGG | 3 cut(s) | 96, 857, 1036 |
| EcoT14I | CCWWGG | 3 cut(s) | 981, 1332, 1412 |
| EcoT22I | ATGCAT | 1 cut(s) | 1216 |
| EcoT38I | GRGCYC | 1 cut(s) | 39 |
| ErhI | CCWWGG | 3 cut(s) | 981, 1332, 1412 |
| Esp3I | CGTCTC | 1 cut(s) | 563 |
| FaqI | GGGAC | 1 cut(s) | 875 |
| FauI | CCCGC | 1 cut(s) | 1243 |
| FbaI | TGATCA | 1 cut(s) | 1848 |
| FblI | GTMKAC | 1 cut(s) | 1268 |
| Fnu4HI | GCNGC | 4 cut(s) | 217, 320, 1034, 2194 |
| FriOI | GRGCYC | 1 cut(s) | 39 |
| Fsp4HI | GCNGC | 4 cut(s) | 217, 320, 1034, 2194 |
| FspBI | CTAG | 8 cut(s) | 20, 107, 222, 324, 887, 1617, 1929, 2181 |
| GlaI | GCGC | 1 cut(s) | 1655 |
| GluI | GCNGC | 4 cut(s) | 217, 320, 1034, 2194 |
| GsaI | CCCAGC | 1 cut(s) | 614 |
| GsuI | CTGGAG | 2 cut(s) | 141, 841 |
| HaeIII | GGCC | 1 cut(s) | 1428 |
| HapII | CCGG | 1 cut(s) | 1088 |
| HgaI | GACGC | 1 cut(s) | 545 |
| HhaI | GCGC | 1 cut(s) | 1656 |
| Hin1I | GRCGYC | 1 cut(s) | 556 |
| Hin6I | GCGC | 1 cut(s) | 1654 |
| HinP1I | GCGC | 1 cut(s) | 1654 |
| HindIII | AAGCTT | 2 cut(s) | 29, 749 |
| HinfI | GANTC | 6 cut(s) | 260, 1222, 1459, 1466, 1891, 2185 |
| HpaII | CCGG | 1 cut(s) | 1088 |
| HphI | GGTGA | 9 cut(s) | 123, 257, 496, 680, 745, 932, 1102, 1609, 1931 |
| Hpy166II | GTNNAC | 4 cut(s) | 923, 1175, 1269, 1922 |
| Hpy188I | TCNGA | 6 cut(s) | 332, 466, 1150, 1471, 1903, 1968 |
| Hpy188III | TCNNGA | 8 cut(s) | 68, 120, 155, 230, 527, 849, 1463, 2141 |
| Hpy8I | GTNNAC | 4 cut(s) | 923, 1175, 1269, 1922 |
| Hpy99I | CGWCG | 1 cut(s) | 2193 |
| HpyAV | CCTTC | 3 cut(s) | 327, 1711, 1747 |
| HpyCH4III | ACNGT | 6 cut(s) | 89, 403, 1239, 1277, 1726, 2008 |
| HpyCH4IV | ACGT | 1 cut(s) | 1554 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 540, 562, 571, 1382, 1754, 1784, 2199 |
| HpyF3I | CTNAG | 5 cut(s) | 329, 1470, 1900, 1967, 2139 |
| HpySE526I | ACGT | 1 cut(s) | 1554 |
| Hsp92I | GRCGYC | 1 cut(s) | 556 |
| HspAI | GCGC | 1 cut(s) | 1654 |
| Ksp22I | TGATCA | 1 cut(s) | 1848 |
| Kzo9I | GATC | 5 cut(s) | 100, 1084, 1473, 1848, 2164 |
| LguI | GCTCTTC | 2 cut(s) | 133, 785 |
| LmnI | GCTCC | 5 cut(s) | 571, 607, 768, 860, 2156 |
| Lsp1109I | GCAGC | 3 cut(s) | 203, 331, 1020 |
| LweI | GCATC | 3 cut(s) | 1109, 1240, 1964 |
| MaeI | CTAG | 8 cut(s) | 20, 107, 222, 324, 887, 1617, 1929, 2181 |
| MaeII | ACGT | 1 cut(s) | 1554 |
| MaeIII | GTNAC | 2 cut(s) | 257, 2038 |
| MalI | GATC | 5 cut(s) | 102, 1086, 1475, 1850, 2166 |
| MboI | GATC | 5 cut(s) | 100, 1084, 1473, 1848, 2164 |
| MfeI | CAATTG | 1 cut(s) | 444 |
| MflI | RGATCY | 2 cut(s) | 1084, 1473 |
| MhlI | GDGCHC | 3 cut(s) | 39, 622, 1155 |
| MlyI | GAGTC | 4 cut(s) | 254, 1231, 1453, 2179 |
| Mph1103I | ATGCAT | 1 cut(s) | 1216 |
| MroXI | GAANNNNTTC | 1 cut(s) | 751 |
| MslI | CAYNNNNRTG | 6 cut(s) | 566, 1113, 1530, 1661, 1805, 2082 |
| MspI | CCGG | 1 cut(s) | 1088 |
| MspR9I | CCNGG | 3 cut(s) | 98, 859, 1038 |
| MunI | CAATTG | 1 cut(s) | 444 |
| Mva1269I | GAATGC | 1 cut(s) | 1385 |
| MvaI | CCWGG | 3 cut(s) | 98, 859, 1038 |
| MvnI | CGCG | 2 cut(s) | 850, 2193 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 540, 562, 571, 1382, 1754, 1784, 2199 |
| NcoI | CCATGG | 1 cut(s) | 981 |
| NdeII | GATC | 5 cut(s) | 100, 1084, 1473, 1848, 2164 |
| NlaIV | GGNNCC | 1 cut(s) | 2197 |
| NmuCI | GTSAC | 1 cut(s) | 257 |
| NruI | TCGCGA | 1 cut(s) | 850 |
| NsiI | ATGCAT | 1 cut(s) | 1216 |
| NspI | RCATGY | 4 cut(s) | 1164, 1411, 1748, 2136 |
| NspV | TTCGAA | 1 cut(s) | 1894 |
| PaeI | GCATGC | 1 cut(s) | 1748 |
| PaqCI | CACCTGC | 1 cut(s) | 2207 |
| PciSI | GCTCTTC | 2 cut(s) | 133, 785 |
| PctI | GAATGC | 1 cut(s) | 1385 |
| PdmI | GAANNNNTTC | 1 cut(s) | 751 |
| PfeI | GAWTC | 2 cut(s) | 1466, 1891 |
| PfoI | TCCNGGA | 1 cut(s) | 96 |
| PkrI | GCNGC | 4 cut(s) | 218, 321, 1035, 2195 |
| PleI | GAGTC | 4 cut(s) | 254, 1230, 1453, 2179 |
| PpsI | GAGTC | 4 cut(s) | 254, 1230, 1453, 2179 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2117 |
| PshBI | ATTAAT | 2 cut(s) | 54, 1998 |
| Psp6I | CCWGG | 3 cut(s) | 96, 857, 1036 |
| PspFI | CCCAGC | 1 cut(s) | 610 |
| PspGI | CCWGG | 3 cut(s) | 96, 857, 1036 |
| PspN4I | GGNNCC | 1 cut(s) | 2197 |
| PspPI | GGNCC | 1 cut(s) | 1426 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 829, 861 |
| PsuI | RGATCY | 2 cut(s) | 1084, 1473 |
| RruI | TCGCGA | 1 cut(s) | 850 |
| RsaI | GTAC | 4 cut(s) | 186, 1203, 1864, 2137 |
| RsaNI | GTAC | 4 cut(s) | 185, 1202, 1863, 2136 |
| RseI | CAYNNNNRTG | 6 cut(s) | 566, 1113, 1530, 1661, 1805, 2082 |
| SapI | GCTCTTC | 2 cut(s) | 133, 785 |
| SatI | GCNGC | 4 cut(s) | 217, 320, 1034, 2194 |
| Sau3AI | GATC | 5 cut(s) | 100, 1084, 1473, 1848, 2164 |
| Sau96I | GGNCC | 1 cut(s) | 1426 |
| SchI | GAGTC | 4 cut(s) | 254, 1231, 1453, 2179 |
| ScrFI | CCNGG | 3 cut(s) | 98, 859, 1038 |
| SduI | GDGCHC | 3 cut(s) | 39, 622, 1155 |
| SfaNI | GCATC | 3 cut(s) | 1109, 1240, 1964 |
| SfcI | CTRYAG | 2 cut(s) | 2064, 2095 |
| SfuI | TTCGAA | 1 cut(s) | 1894 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 566, 1113, 1530, 1661, 1805, 2082 |
| SmlI | CTYRAG | 2 cut(s) | 32, 1645 |
| SmoI | CTYRAG | 2 cut(s) | 32, 1645 |
| SphI | GCATGC | 1 cut(s) | 1748 |
| SsiI | CCGC | 2 cut(s) | 1250, 2193 |
| SspI | AATATT | 2 cut(s) | 211, 1732 |
| SspMI | CTAG | 8 cut(s) | 20, 107, 222, 324, 887, 1617, 1929, 2181 |
| StyD4I | CCNGG | 3 cut(s) | 96, 857, 1036 |
| StyI | CCWWGG | 3 cut(s) | 981, 1332, 1412 |
| TaaI | ACNGT | 6 cut(s) | 89, 403, 1239, 1277, 1726, 2008 |
| TaiI | ACGT | 1 cut(s) | 1557 |
| TaqI | TCGA | 5 cut(s) | 154, 993, 1054, 1894, 2167 |
| TatI | WGTACW | 1 cut(s) | 2135 |
| TauI | GCSGC | 1 cut(s) | 2196 |
| TfiI | GAWTC | 2 cut(s) | 1466, 1891 |
| TscAI | CASTG | 3 cut(s) | 283, 424, 1858 |
| TseFI | GTSAC | 1 cut(s) | 257 |
| TseI | GCWGC | 3 cut(s) | 216, 319, 1033 |
| Tsp45I | GTSAC | 1 cut(s) | 257 |
| TspRI | CASTG | 3 cut(s) | 283, 424, 1858 |
| VspI | ATTAAT | 2 cut(s) | 54, 1998 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 728 |
| XceI | RCATGY | 4 cut(s) | 1164, 1411, 1748, 2136 |
| XmiI | GTMKAC | 1 cut(s) | 1268 |
| XmnI | GAANNNNTTC | 1 cut(s) | 751 |
| XspI | CTAG | 8 cut(s) | 20, 107, 222, 324, 887, 1617, 1929, 2181 |
| Zsp2I | ATGCAT | 1 cut(s) | 1216 |