Rh5CG501500

translocase of chloroplast 159

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
69701499 .. 69701774
276 bp
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UTR
Exon/CDS
Intron
Rh5CG501500.1

Sequence Viewer

Length: 276 bp
ATGGGCCCAGAGATCAACTCGTTTTACTCATCGGGTTCTTCATCGATTATGACTATGGGCTCCTTTCAAGTGCAACTTATTGGATGTTTGAGCACGATTGTGGAATTTGAAATTGAAGGCATTGAAATTACAATAGGTGTGAGCTTGGAGAATGGATTTGATCAAATTGGCCGTGATGTTGAATTGCAGTCCGAGTATGACAAAGTGGTTGTTGCTAAAATAGGGGATGTGGGGTTGAAAACTGATTTTGTTGGTGCCGATGGAGTTGATTTCTAG

Protein Analysis

91

Amino Acids

9.73

Weight (kDa)

4.05

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 104
AgsI TTSAA 6 cut(s) 68, 110, 116, 125, 182, 238
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
Alw21I GWGCWC 1 cut(s) 95
AoxI GGCC 2 cut(s) 4, 169
ApaI GGGCCC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 4, 5
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 2 cut(s) 8, 62
Bbv12I GWGCWC 1 cut(s) 95
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 156
BclI TGATCA 1 cut(s) 160
BfaI CTAG 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 4, 5
BmiI GGNNCC 3 cut(s) 6, 61, 256
BplI GAGNNNNNCTC 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 44
BseCI ATCGAT 1 cut(s) 44
BseGI GGATG 2 cut(s) 89, 232
BseSI GKGCMC 1 cut(s) 8
BshFI GGCC 2 cut(s) 6, 171
BshNI GGYRCC 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 95
BsnI GGCC 2 cut(s) 6, 171
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 8, 62, 95
Bsp143I GATC 2 cut(s) 12, 160
BspANI GGCC 2 cut(s) 6, 171
BspDI ATCGAT 1 cut(s) 44
BspLI GGNNCC 3 cut(s) 6, 61, 256
BspT107I GGYRCC 1 cut(s) 254
BssMI GATC 2 cut(s) 12, 160
BstF5I GGATG 2 cut(s) 89, 232
BstKTI GATC 2 cut(s) 15, 163
BstMBI GATC 2 cut(s) 12, 160
BstSLI GKGCMC 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 44
BsuRI GGCC 2 cut(s) 6, 171
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 2 cut(s) 89, 232
Cfr13I GGNCC 2 cut(s) 4, 5
ClaI ATCGAT 1 cut(s) 44
CviJI RGCY 4 cut(s) 6, 60, 144, 171
CviKI_1 RGCY 4 cut(s) 6, 60, 144, 171
DpnI GATC 2 cut(s) 14, 162
DpnII GATC 2 cut(s) 12, 160
EaeI YGGCCR 1 cut(s) 169
Eco24I GRGCYC 2 cut(s) 8, 62
EcoT38I GRGCYC 2 cut(s) 8, 62
FaiI YATR 3 cut(s) 50, 56, 198
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FbaI TGATCA 1 cut(s) 160
FokI GGATG 2 cut(s) 96, 239
FriOI GRGCYC 2 cut(s) 8, 62
FspBI CTAG 1 cut(s) 274
HaeIII GGCC 2 cut(s) 6, 171
Hpy188I TCNGA 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 73, 187
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 12, 160
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 1 cut(s) 21
MaeI CTAG 1 cut(s) 274
MalI GATC 2 cut(s) 14, 162
MboI GATC 2 cut(s) 12, 160
MboII GAAGA 1 cut(s) 30
MhlI GDGCHC 3 cut(s) 8, 62, 95
MluCI AATT 5 cut(s) 104, 111, 126, 165, 182
MslI CAYNNNNRTG 1 cut(s) 98
NdeII GATC 2 cut(s) 12, 160
NlaIV GGNNCC 3 cut(s) 6, 61, 256
OliI CACNNNNGTG 1 cut(s) 98
PspN4I GGNNCC 3 cut(s) 6, 61, 256
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 4, 5
RseI CAYNNNNRTG 1 cut(s) 98
Sau3AI GATC 2 cut(s) 12, 160
Sau96I GGNCC 2 cut(s) 4, 5
SduI GDGCHC 3 cut(s) 8, 62, 95
SetI ASST 2 cut(s) 139, 146
SgeI CNNG 8 cut(s) 20, 31, 45, 80, 106, 157, 185, 205
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 5 cut(s) 104, 111, 126, 165, 182
SspMI CTAG 1 cut(s) 274
TaqI TCGA 1 cut(s) 44
TasI AATT 5 cut(s) 104, 111, 126, 165, 182
TspDTI ATGAA 1 cut(s) 30
XapI RAATTY 1 cut(s) 104
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.